Array 1 6441-8749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXZB010000020.1 Empedobacter stercoris strain ES180 NODE_20_length_49797_cov_177.537932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 6441 47 100.0 30 ............................................... AAAAGAGGGGAGAAAGGTTTAGATCTTTGG T [6466] 6519 47 100.0 30 ............................................... ATAAAAAACAGAAATAAAATAGAATGGGAT T [6544] 6597 47 100.0 30 ............................................... ATGCTAATTTTTATCTGAAGTGCAGCTTTT T [6622] 6675 47 100.0 30 ............................................... AAAATGATATTTGGATAATCAACTGGATGA T [6700] 6753 47 100.0 30 ............................................... TCAGGATTATCCATAATAGATTGATCCTTT T [6778] 6831 47 100.0 30 ............................................... TCGTCTGCAATGATTTTATCAACTCCGCAT T [6856] 6909 47 100.0 30 ............................................... TCAGGATTATCCATAATAGATTGATCCTTT T [6934] 6987 47 100.0 30 ............................................... TCGTCTGCAATGATTTTATCAACTCCGCAT T [7012] 7065 47 100.0 30 ............................................... AACCATCGTAATATATAGTAATTTGACTTT T [7090] 7143 47 100.0 30 ............................................... CAGAATTACAAAATTAAAGTAACCCTGGAT T [7168] 7221 47 100.0 30 ............................................... TCTTCGGTTACCGAAATTTTACATTCGCTC T [7246] 7299 47 100.0 30 ............................................... ACATCTTTTAAAACTTCTTCCATACGAGAA T [7324] 7377 47 100.0 30 ............................................... ATAATATCATGCTGCTTCGGATCAAGTTGT T [7402] 7455 47 100.0 30 ............................................... ATCGTTAAATTATGAGACACCGAACTAACA T [7480] 7533 47 100.0 30 ............................................... GGAATTATTAAGAGAAAAGTCAAAACCTTG T [7558] 7611 47 100.0 30 ............................................... TAATAATGCGAAATATTTTCTTCTTGAATA T [7636] 7689 47 100.0 30 ............................................... TGTAGTCCATGTGCAGCGGCGCATTTTCCC T [7714] 7767 47 100.0 30 ............................................... ACGGAGATTCTCATGTTCTGCTGGGAATAA T [7792] 7845 47 100.0 30 ............................................... AAGAATTAACAGTGCGACCAGCATTCAAAG T [7870] 7923 47 100.0 30 ............................................... GATAATCATATCGAAGGTATTCCCACGCAT T [7948] 8001 47 100.0 30 ............................................... TTAATTGTTTACGATGCATATATAAAAAAA T [8026] 8079 47 100.0 30 ............................................... TTTTTTGCGTTTTAAGAACGTTTTGTAAGT T [8104] 8157 47 100.0 30 ............................................... ATATGCGATGATTTTTATCTATTGCCCAAA T [8182] 8235 47 100.0 30 ............................................... AAAACAGACATTAAAATCAAAGCGATGTTA T [8260] 8313 47 97.9 30 ........................A...................... AGGCAAACAATTGAATATTTATTAGCGCAA TAA [8335] 8393 47 100.0 30 ............................................... TATTGGTTGTTCAAGTGACGACGATTCAAG T [8418] 8471 47 83.0 30 .......T.....TGA....TA...C...T................. GAATATCTATCATACAAGATTCTGTGCGTT 8548 47 83.0 29 .......T.....TGA....TA...C...T................. CACAGCAGTTGGCGACCAATCAACAATTA 8624 47 83.0 30 .......T.....TGA....TA...C...T................. CAACAAGGATTAGTGAAGTTGAGTTATCTC 8701 47 76.6 0 .......T.....TGA......AC....TT.....TC..T....... | T,G [8721,8729] ========== ====== ====== ====== =============================================== ============================== ================== 30 47 97.5 30 GTTGTAACTACTTACGTAAAATTACAAAAGTGAAAGGAACTCACAAC # Left flank : CTTTATATAAGTGTATGATAGGGGAGCAGCGTGTGATTCGTTTTCCTGAAATGACATGAGTTTTAGTCGTTATAATGCTTATCGTATTATGTGGGTTTTAGTTTTGTTTGATTTGCCAACGGAAACAAAGAAACAAAGAAGTCAAGCTACTCGTTTTAGAAAAGAGTTGATAGACGATGGATTTGCAATGTTTCAGTTTTCGATTTATTTGAGACATTGTCCAAGTAGAGAAAATGCTGAGGTACATATAAAACGCGTCAAATCTAAATTACCAGAATATGGGAAAGTAGGAATAATTTGTATTACGGATAAACAATTTGGACAAATGGAGATCTTCTTTTCCAAAAAAGAAACCGATTTACCAACAGGTCCACAACAATTAGAATTATTTTAGAAATAAAAAAATCCGATAGAAAACTCAACTTCTATCGGATTTTACTTTTTTTCTCATTTCTAAATTTCTTCTTAAACCCTTTTATATAAAGGACTTTTAAAATGAG # Right flank : CTTCTATACTTTCAGTCTTATGCTCAACTTCAACCTTAATGTTATGGACAAAGTAAATTTTTCCGTTTTAGTTTTGGCTTGTCTGCTTAAAGAACAGTTGTAGTTTAGTAGAATGGTATAGTTGAAACAAGTTAGTTATAGAATAAATGGGATATAAATTAGAAACAAGGTTTCCTTTTGTTGATCAAGTTTTGAAAGGCATAGGGCAAATCATGTTACAAGAAAATAGTGGTACTGGATTATTATTTTTGATTGGTATTTTTTTTTGGTAGTACAATAGGGGGTATAGGGGTGTTGATCGCAACATGTGTTGGGACTATTACAGCGATTTTATTGAAGTACAATTCAGAAGAAATAAATGCAGGATTATATCGTTTTAGTGCGGCTTTGGTAGGTGTTGGTTTAACTGTTTTGTTTGAGTCTACTTTTCTTTTATGGGTTTTATTAGTTGTTTTTTCTGCTTTGGATACGGTTATTCAGCATTTTTTTAATCAAAGAAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTACTTACGTAAAATTACAAAAGTGAAAGGAACTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 62944-59217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXZB010000006.1 Empedobacter stercoris strain ES180 NODE_6_length_103212_cov_175.178843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================= ================== 62943 28 100.0 39 ............................ TCAAAGAAACACAATCTCGCTACGCTTGTAGTTGTAACC 62876 28 100.0 39 ............................ CAATACTACTCGCATCTTCTTCCGTTATTTGTTGTAACC 62809 28 100.0 39 ............................ AAATCCACACTTCAACAATATTTCTTCTGTGTTGTAACC 62742 28 100.0 38 ............................ TTTTCAAATAAAACACGCTTACCACTTGAGTTGTAACC 62676 28 100.0 39 ............................ TATTTGTTTTAAAGCGTTATTTGTATCAAGGTTGTAACC 62609 28 100.0 39 ............................ TCCCAAAATTTCTTTTGTGCTATTGCGTTGGTTGTAACC 62542 28 100.0 39 ............................ CAATACTACTCGCATCTTCTTCCGTTATTTGTTGTAACC 62475 28 100.0 39 ............................ AAATCCACACTTCAACAATATTTCTTCTGTGTTGTAACC 62408 28 100.0 39 ............................ AAATCCACACTTCAACAATATTTCTTCTGTGTTGTAACC 62341 28 100.0 38 ............................ TTTTCAAATAAAACACGCTTACCACTTGAGTTGTAACC 62275 28 100.0 39 ............................ TATTTGTTTTAAAGCGTTATTTGTATCAAGGTTGTAACC 62208 28 100.0 39 ............................ TATCGAATCTACTTTTACTTCAATATATTGGTTGTAACC 62141 28 100.0 39 ............................ GTTCTTGCATTGTTTTAACCAGTATTTTATGTTGTAACC 62074 28 100.0 39 ............................ TTATTAAAGACATAGTGTGTACAAGTTTTGGTTGTAACC 62007 28 100.0 38 ............................ TTTTCAAATAAAACACGCTTACCACTTGAGTTGTAACC 61941 28 100.0 39 ............................ GCTCCAATTCGATTTCTTTCGACATATTGCGTTGTAACC 61874 28 85.7 39 ..A.............AAA......... TAGGAATAATCGACAATAGAAAAGCCTTGTGTTGTAACT 61807 28 96.4 77 ......T..................... TTTTCACAATGGATGAATTTTGGTAATGAAGTTGTAACCCTACAGCATCTACCCAAATCATATGCATTGTTGTAACC 61702 28 100.0 39 ............................ TATCGAATCTACTTTTACTTCAATATATTGGTTGTAACC 61635 28 100.0 39 ............................ ACATGACGAAAGCTTTTGAAGTTATTCAACGTTGTAACT 61568 28 85.7 39 A..........A..T...T......... TGTATTCGATTTCTGAACGTTTTGCTTCTAGTTGTAACC 61501 28 96.4 39 ......T..................... TTTGGGTTATCTTGGGTTTATCTCATCTTAGTTGTAACC 61434 28 96.4 38 ...........................T TAGTAAGGTTGCATGGACCTCTACATCAAGTTGTAACC 61368 28 100.0 38 ............................ TTATTAAAGACATAGTGTGTACAAGTTTTGTTGTAACC 61302 28 92.9 39 ..............G...T......... AATAACGAGACGTGAATTGGTTGTTACTGTGTTACAAAC 61235 28 78.6 39 ......A........AT.T...GA.... AAAACAGTTGTAATAGTGATAGTATTCATGGTTGTAGTT 61168 28 85.7 38 .C....AG...................T TAGTAAGGTTGCATGGACCTCTACATCAAGTTGTAACC 61102 28 100.0 38 ............................ TTATTAAAGACATAGTGTGTACAAGTTTTGTTGTAACC 61036 28 92.9 39 ..............G...T......... AATAACGAGACGTGAATTGGTTGTTACTGTGTTACAAAC 60969 28 78.6 39 ......A........AT.T...GA.... AAAACAGTTGTAATAGTGATAGTATTCATGGTTGTAGTT 60902 28 89.3 39 .C....AG.................... TGCAGAAGCAAATAAAACTTGTTGAGTGTCGTTGTAACC 60835 28 96.4 39 ................T........... GCTGAACATCATCAATAATCATCAAACCTGGTTGTAACT 60768 28 75.0 39 ...T..A........AT.T...GA.... AAAACAGTTGTAATAGTGATAGTATTCATTGTTGTAGCT 60701 28 85.7 39 .C....AG..........T......... TTTAAATTATGTTTGAGTTCTTTTACTTCAGTTGTAAAT 60634 28 96.4 39 .............T.............. AAAGCAAAATCTGTCATTGATATTAGTTTAGTTGTAACT 60567 28 92.9 39 ..A...A..................... TCAGGTAAACGTAGAAAATGGTTGCGTCCAGTTGTAAAT 60500 28 96.4 39 .............T.............. AAAGCAAAATCTGTCATTGATATTAGTTTAGTTGTAACT 60433 28 92.9 39 ..A...A..................... TCAGGTAAACGTAGAAAATGGTTGCGTCCAGTTGTAACC 60366 28 96.4 39 .............T.............. AAAGCAAAATCTGTCATTGATATTAGTTTAGTTGTAACT 60299 28 92.9 39 ..A...A..................... TCAGGTAAACGTAGAAAATGGTTGCGTCCAGTTGTAACC 60232 28 100.0 39 ............................ TAGTGTCTAATGTAACACCTGCTGGAAATGGTTGTAACC 60165 28 100.0 39 ............................ TTTACGCTGTCAGCAGTTATTCCAATGATAGTTGTAACC 60098 28 100.0 39 ............................ AACATCGATGTTGTCATTCTAAGAGCGCGTGTTGTAACC 60031 28 100.0 39 ............................ AAGCTTTGTTCCTGAAAATTCTAAATCGATGTTGTAACC 59964 28 92.9 39 ......T......T.............. TGTTAATGCGAAGTATAGGTTTTGAAGCTAGTTGTAACC 59897 28 92.9 39 ......T......T.............. TAAAAATATAAGTGTTGTTAGTTATTTCGAGTTGTAACC 59830 28 92.9 39 ......A...........T......... GATTGTTATTGATAGTACAAATGTACAATGGTTGTAACC 59763 28 96.4 39 ......A..................... AAACCTTGTTCATTTAACTCATGTTCAAAAGTTGTAACC 59696 28 89.3 39 ......AG.....T.............. TTTGTAGTTTTGCTACATAATGTGAGATACGTTGTAACT 59629 28 96.4 39 .............T.............. TATCCATGATAATAGTTTCTTGTACCACTTGTTGTAACT 59562 28 82.1 23 ......A........A..T...GA.... TGATAGTATTCATGGTTGTAGTT Deletion [59512] 59511 28 89.3 39 .C....AG.................... ACGTTTTTTGAATGCTCCCCTTGTGGTGGAGTTGTAACC 59444 28 100.0 39 ............................ AGCGTTTGTTTGCTCAATAAAGAAATCCAAGTTGTAACC 59377 28 100.0 38 ............................ TACGATAAGCTATGAACATTTTAAACAAAGTTGTAACC 59311 28 92.9 39 ..............G...T......... TGTTCTTTCAACATCTGTAAAACCTTCTGTGTTGTAACC 59244 28 92.9 0 ......T......T.............. | ========== ====== ====== ====== ============================ ============================================================================= ================== 56 28 95.0 39 GTGCTTGATTTTGAAGCGCAATTCCAAC # Left flank : TTGAGAAGTATATTTATGAACAGGTAAATGATAAAACTGAATTATTGCAAAATGGTAATCAAAATTTCAAAAACTATTTGGTAAATGGACTTTTAAAACAAATACAAGGTATTGATGTTTCAAATTTCAAATTTATAAATCACCAAAAATTTGAAACAATTAATGTCGAAGATTTAGATAAAGAAGCCTCAGCGTTAGAACAGAAAGTATATGTATTGATTAATATTCGCAATCAATTTTCACATAATCAATTCCCTAAAAGTGCTTTCTACCAATTTTGTCAAAAGATTTTATCGATTGAAGAAGATGAATTATTTGCTGATTATTATTTACGATTGTTCAAGTTGTTGAAAAATGAATTATTAGACTAGAAAATGAAAAATGACAAAAAAAGGAAGAATTAATGTAATAAATGTTCATTTTTTTAATTCTAAAAATAGAGTAGAAGCCCTTATAAGTAAAGGGTTTTGAACTAAAAATAATTTGAGGTTGTTGTAACC # Right flank : TATATTTTTATAAGTAAATCGGAATTGTTTTTTAGTTGAAGTAGTATTAAAAACAAAATCTCCCAAAATATATATTGGGAGATTTTTATAAATAGGTTATTATATTATGATTGAACGCAAAAAATAACAGCTCAATTAAAATGTATTTTTTTATTTACTTTCTTCGACAATCCTTCGACCGTTGTTCGACTGTTGTTCGACAAAACATACTTTTTCTCGAGCCATTGTCGAAGGACACTCGAACAAACCCCGAAGAAATAGAGTATTTTATCCTTCAAAAGAATAAATGATAAAATAAGAAGTACACATTGTTGTGTAAAACAAAAAACTTCCTTAAAACGGTTGCTGAGCATGCCGAAGTATAAAAAGAGGCTTTCATTTATACTATTTTGTGTATTTGTATCTAAAATTCCAGTTATGCAACAGTTACCCTTGTTATGTGCTGGCATTATTGTAGAGCTAAGTCCCAACATCTTACTAAAGCTTGATAACATAGATAT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTGATTTTGAAGCGCAATTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //