Array 1 23323-21644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJX01000186.1 Pseudomonas aeruginosa strain 367_PAER 1578_335777_4374785_809_,...,912_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23322 29 100.0 32 ............................. GTTATAAGGATCGCCAAGGGGTTAGTTCACGG 23261 29 100.0 32 ............................. CCCGGCTGGCCGCGACACGCGCTCGCGATGCC 23200 29 100.0 32 ............................. CGCTCGGCAATGCCGAGGTGTGGGAGGCAGTG 23139 29 100.0 33 ............................. CGGCTGGTGGCGGGACAACGACACGGGGTACAT 23077 29 100.0 32 ............................. GCTACCAGTACAGCCGTGGGATGTGGGTCGAC 23016 29 100.0 32 ............................. CCCTCATTAGCCACGCCGTCAGTAGTTGGCTG 22955 29 100.0 32 ............................. CGGGCAACGGTCCATACCAGTCTCATTCCCCA 22894 29 100.0 32 ............................. GGGTATGGAGCATGAGCGAAATCTGGAAATGC 22833 29 100.0 32 ............................. TTCATGGACGACCCAGGCGAAGGCCAGTACAT 22772 29 100.0 33 ............................. CCGGCCGCCGGCCGAGGTCCCTGTCCGACAAGC 22710 29 100.0 32 ............................. TCACCGATGGCCTCGGCGCCGAGGGTATCGAT 22649 29 100.0 32 ............................. GCACCCGCCGGGCGGGCACACAGGGAAGGAGG 22588 29 100.0 32 ............................. ACCTAGTGATCCTCGATTGCGGTCGATGGGAG 22527 29 100.0 32 ............................. GTTGCAGCATCGCCGGCGTGGCGGGCCTGAGC 22466 29 100.0 32 ............................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 22405 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 22344 29 96.6 32 ...........A................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 22283 29 96.6 32 ...........A................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 22222 29 96.6 33 ...........A................. TGAAAGTCAGCGACCATGCCGGCCGGCCAATCC 22160 29 96.6 32 ...........A................. CCCTTCATGCCGGTGCCCTTCTGCCCGCAGGG 22099 29 96.6 32 ...........A................. GTGGTGCCGTGTGAGCCGGGCTTGGGGTCATG 22038 29 96.6 32 ...........A................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 21977 29 96.6 32 ...........A................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 21916 29 93.1 32 ...........A.........T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 21855 29 96.6 32 ...........A................. GTCACCGGGCAGAGCAACACTGCTGTTGGCAA 21794 29 96.6 32 ...........A................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 21733 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 21672 29 89.7 0 ........T..AC................ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTTTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33504-32497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJX01000186.1 Pseudomonas aeruginosa strain 367_PAER 1578_335777_4374785_809_,...,912_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33503 29 100.0 32 ............................. CCGAGTCCACCGGACTGACGCTGCACACGAAG 33442 29 100.0 32 ............................. GCGATGAACCCCGCTCACATCTTGTTCGAGTG 33381 29 100.0 32 ............................. ATGGGCGTGCGCAGCGTGCGCGGGCTCGTCCT 33320 29 100.0 33 ............................. TTCATCTTTGCAAACCACCCGACTAGACCCCGA 33258 29 100.0 32 ............................. TGTGGCTCGCCGCGTTGAGCAACAACAGCGCA 33197 29 100.0 32 ............................. GCGGTAATCGGGGTCGTACTTCAGGCCCTCCC 33136 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 33075 29 100.0 32 ............................. CAGTTCTCTGTCGTTCATTGCTTGGCTCCTTC 33014 29 100.0 32 ............................. CATGGCAAGGGCCGCTGATTTCCGATGAGGAA 32953 29 100.0 32 ............................. CCCTTCGCTGACCGTCATACCGTTGAGGCGCG 32892 29 100.0 32 ............................. GATTATGCCGTGGCTCGGGGCGTGGAAGCCGG 32831 29 100.0 33 ............................. ACAAGTTGCCGCTGTCGAAGGTGACGACGACCG 32769 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 32708 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 32647 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 32586 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 32525 28 79.3 0 A..........A..C.....-..A....T | C [32516] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //