Array 1 184-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGR01000004.1 Acinetobacter baumannii strain ARLG1800 ARLG1800_NODE_4.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183 28 100.0 32 ............................ ACAAGATCCCGATAGTTTTTTACATAAAGCTC 123 28 100.0 32 ............................ AGCACAAAATTTATGGTTTACAAAATAATCTA 63 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATAAAGAGTGATTATGTCTTAAAAAAAAAGGGGGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5737-6543 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGR01000004.1 Acinetobacter baumannii strain ARLG1800 ARLG1800_NODE_4.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5737 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [5739,5743] 5799 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 5859 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 5919 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 5979 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 6039 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 6099 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 6157 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 6217 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 6277 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 6337 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 6397 28 92.9 31 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 6456 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [6460] 6517 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 93.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TCTTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTACTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCGTTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTAT # Right flank : ATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4903-2273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGGR01000011.1 Acinetobacter baumannii strain ARLG1800 ARLG1800_NODE_42.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 4902 29 86.2 31 ....G.......CC..............A ATACCCCTATTCGATGAAAACGCCTAGCCAA 4842 29 86.2 31 ....G.......CC..............C AAGACAAACTTTCTCTAAAGATGTTTAGTAA 4782 29 86.2 31 ....G.......CC..............A TCTGGACCGCTACCATGTGCGAAACTTGAAA 4722 29 89.7 31 ....G.......CC............... ATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 4662 29 86.2 31 ....G.......CC..............A TGAGAGAGCGAATTTTTGAATTAGTCGATGT 4602 29 86.2 31 ....G.......CC..............A ATATGCGACAGATCTAAAAACGCTTGAGGAA 4542 29 82.8 31 ...AC.......CC..............A GCAAAGTTTCAGGACAAAGTTATAGCGCAAT 4482 29 86.2 31 ...AC.......CC............... AGCTGTAACTAGGGGCACACATTCATAGGAG 4422 29 82.8 31 ...AC.......CC..............A CGATCATCATTCAGAGAATTTCTTAAACCTG 4362 29 82.8 31 ...AC.......CC..............A AAGCAGAAACAGCAGAACCCAGAATCTTTGT 4302 29 86.2 31 ...AC.......CC............... TTAGTTAGCCCAACAAGAAATTGATCAAGAA 4242 29 100.0 31 ............................. TTCTTTAATAGGTCTCTTTCATTGCCAATGA 4182 29 100.0 31 ............................. TGTATTGTTGCTGACTTAAACCAATTCTTAC 4122 29 96.6 32 ............................C TTGAGAAATTCCATTCTCTTTGGGTACAGGTA 4061 29 96.6 31 ............................A CAATATAGATATGCTCAGCGTTTTGAACCGA 4001 29 100.0 31 ............................. TTGTAACCACCAGTTAAAGTATTGACTAAAT 3941 29 100.0 32 ............................. TTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 3880 29 96.6 31 ............................A TTGAGAATCCAGTAGGCCGAATAGAAAAGCT 3820 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 3760 29 89.7 31 ...AC.......................A CAGGGGTCAAGTTCAGAAGATTTACGTTACA 3700 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 3640 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 3580 29 93.1 31 ....C.......G................ TAAATGCTCAACTATTTCTGTAGCTAATGGA 3520 29 86.2 31 ...GC....T...C............... TCAAATGATTTAATGAGCTTGTAGCCATTTT 3460 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 3400 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 3340 29 79.3 31 ..CGC.......CC..............A AGCCATTTACTTTGATAAAGCGACACATAGC 3280 29 96.6 31 ............................A GCTTCAACACGTGTGCTATTAGGCGGCAAAG 3220 29 96.6 31 ............................A TGAGCAAATTATCAATTGATCTATCTGCAAG 3160 29 93.1 31 ............CC............... AGACGGTGTTACCTGTAGGCGGTGTCTACTG 3100 29 86.2 31 ...TC.......C...............A TCGTTTGAATAATATGGACAATCCAGCCAAT 3040 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 2980 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 2920 29 93.1 31 ....G.......C................ TCATCACGTAGCCTTTTACACGCATCTTGCG 2860 29 96.6 50 ....................C........ GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 2781 29 89.7 31 ....G.......CC............... ATATATACTATTTTCTCCGTCATTTTCTTTT 2721 29 82.8 31 ...TC.......CC..........A.... GATAGTTCGGAGCATGTAAATCTCCAAAATG 2661 29 82.8 30 A..TA........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [2636] 2601 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 2541 29 86.2 31 ...GC.......C...............A TTATCCAGATAAAACCATATCTACAAAGTGG 2481 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 2421 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 2361 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 2301 29 79.3 0 ....G....T...C.A........AT... | ========== ====== ====== ====== ============================= ================================================== ================== 44 29 88.5 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : TTAGAAAATAATTGCTGTTAATACTTGAAGTCTCTGGT # Right flank : TTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCCACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCCTT # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [53-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //