Array 1 67661-67213 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUF01000018.1 Nitrosomonas nitrosa strain Nm146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67660 28 100.0 32 ............................ TGCCCATGAACTTGGCTATAACAATTCTCAGA 67600 28 100.0 32 ............................ TCATCAATGTGTTGTTTGGATCTAACTCTTCT 67540 28 100.0 32 ............................ ACGATTCAATACGTGTCACTTTAGAGAGAGAT 67480 28 96.4 32 .............T.............. AGCACAGAAAACGGCAACGGCCGTTGAATAAG 67420 28 100.0 32 ............................ TAAATCACGCTCGAGCGAGCTGATACGCTGTT 67360 28 100.0 32 ............................ TATGGTTATTACCAGCGGTTACCGCCATCCGA 67300 28 100.0 32 ............................ TTACCGGTTGTTTCTGATCGTGCTGATTGGGA 67240 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : GCCCGGATGAACACCAGGCAAATATCCTGCGCGCTTTGGGCATTACGTTTCCCACTAAACCAAAAATTAGCAAGCGCACAAAAATCAACAAGCATGCCGCGTAGGCAGCAGCCATTTCAGCAATATCGTCATTTTTTAAAGTAAAAACATACAATTACAGCATTAATGCGTTTGCTAGCCGGGGGAAGATCCGTCGGAGGAAACCGGCATCTC # Right flank : AAGGCAGAGCAAGAAAAACTGCTAGCCGCATTACGCGCCATGCAGCGCGATTCCGCCACAGTCATCCCGCAAGGCATGGAAGTGGCGCTGGTGGAAGCGCTGCGCAGCTCGGCTGCCGATCATAAAACGTTTGTCGAGAACATGAACGAAGGCATTTTATTGGTTTGCCTGGGGCAAAGCGGCACGGTCAAAGGTACGCTAGGGAAACTGGGTGGAGAAGCCGAACGGGAAAACGTCAAGGACGCCATCCTCAAGGCTGACTCGGATCTGTTATCCGAGAGACTGAACCGCACCCTCGTGAAGTGGCTGGTGGAATGGAATTTCCCGGGCGCTGTACCGCCCCGGGTTTACCGGGTATTCGACGATGAAGACCTGGATGCGCATGTGGCGCGCGACAAGACGATCTCGGAGATGGGCTACAAACCCACCTTGAAATACATCACCGACAAATACGGTGGGGAGTGGGAAGAACGCCAGCAGGCCGAACCCCCCGCTGAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 163932-162363 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUF01000002.1 Nitrosomonas nitrosa strain Nm146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 163931 36 100.0 34 .................................... TTGTTTTTGTTTTGCTTCTTGCCAATGTTGGCAG 163861 36 100.0 32 .................................... CCGGAAACTCAATGCATTTGCTGAGGATTTAG 163793 36 100.0 31 .................................... CGTCAAGCCCGTGTTTTTGTGCCAACCTAGC 163726 36 100.0 33 .................................... TTAAATGTCTTGTCAAAATTAATTAATTCTTGA 163657 36 100.0 34 .................................... CTATTATCATCCAAGCATAAGGCGCAGGTATGGA 163587 36 100.0 32 .................................... CTTCAAGAATCAGCAGGTAACCAGCAATTGAT 163519 36 100.0 34 .................................... GCTGTCGCTATGCTTGTTCCATTACCGTTAAAGG 163449 36 100.0 35 .................................... TTAAGGTATAAAGCTCTGTTCATAGCTATGGTTAA 163378 36 100.0 33 .................................... TCCCAATGAAGATCAATTTCCACATCATTCTCC 163309 36 100.0 35 .................................... ACTTGCACCCATATCTCTAAACTAGCGTTGACGAA 163238 36 100.0 33 .................................... ATATTTCCCATCGATGAATTGGCGTTGTTTTTT 163169 36 100.0 33 .................................... AAATACTAAAGTTTGCTTTCCGTCCTTAGTCAG 163100 36 100.0 32 .................................... GCGGCTTTCTCAGCGGCTTTACCTTGTTGTAT 163032 36 100.0 33 .................................... TAATCCTGGGTGATGGGTAACACAGGAACCTAC 162963 36 100.0 35 .................................... TCATTTTCATCTCCTTTATCTCAAGTTCCGCCTGA 162892 36 100.0 33 .................................... GTTTTCTGCGCCCGTTCTACAGCAAAATCAGGA 162823 36 100.0 35 .................................... CAATTTAACTCCGACTCCTTCAAGGTATCCGTCCC 162752 36 100.0 34 .................................... TCTTCCTAAATTGTGGCTTGCGTAATATATTTTC 162682 36 100.0 35 .................................... AGAGAAAACTTCTTCGTATGCAGTGAATCTGTTTA 162611 36 100.0 36 .................................... GCTATGAGTGTTTATAGGATCAATTCGATCACTTAA 162539 36 100.0 35 .................................... CTTGCTTTTTGCAAGCCTTTCCGCTTCAAGCTTGG 162468 36 100.0 34 .................................... GTAATAAATTCCTTCGCATTCTTGTCCAGCCACT 162398 36 94.4 0 ..................................TA | ========== ====== ====== ====== ==================================== ==================================== ================== 23 36 99.8 34 GTAGACATACAGCCCTGATTTAAAAGGGATTGAGAC # Left flank : GCACGCCCTCAGAGCGGATCACACTACAATTCGATACCCCACTCAGACTACAACAGGATGGACACGCCTTGCCGCCTTCCAAGCTCACTGCGCGCACCCTGCTGATGGCGTTGGTTCGGCGAGCCAGCTTGCTCGCTGAAATTCATGGCGGCAAACGACTCTATAGTACAGAAGAATTTTCTGAATTGGCTGAGCATGCCCAACAAATTACAAGCCATCATCATCTTACTTGGCGCGACTGGACACGACATTCATCTCGCCAGCGACGTACCATGCAATTGGGCGGATGTATCGGCAAATGGCAGTTGAGTGGCAATCTAACTCCATTCCAGTCATTGCTACGGCTAGGATCATGGCTGCATGTCGGCAAAGAAGCCAGTTTCGGTCTTGGTAAATATCGCATTATCGAGGAATAAAAACCCTATGTTTGTACATACCCTCAAAACTCGCGAACTCACTCGGCAACCAATTGAATGTGATATAAAAAATGGGAATGGTGA # Right flank : ATTTATCAGAGTTAGCACTACTGATATTTGGCAAGCTTGCCAGCCAAGTTGGCTCTCTTGCTTTCACTTATACTCTTGATCATTCCAAAACAGAAGGTAGTCAAACGCTTCTTGTAAAACCGATTCGATATCAGGTTGAATGAACAGAGAACAATGCCCATGAATTCACGTTCAATTTATTTAATTTGCTATGACGTATGTTGCCCACGGCGGCTAAGACAAGTTCATCAGTTTTTGTTGGGCTATAAAACGGGGGGGCAAAAGTCTTTTTTTGAATGTTGGTTAACCCCACGGGAGCTGCGTGACGTCAGAATGCGTCTGATTGAACTGATCGATCCTGTCGAAGATCGTGTGCATATCTTCCAGCTCGATCCGCGCATGACACCGGTTTGCTATGGTGTTGCCGTTACCCGAGCAATCAATACACCATTTATCGTTACTTAGGAGGTAATTTTGACGAGTCTTTACGTTGATAGACGAGGTGTCGAATTGGAAGTGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGACATACAGCCCTGATTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 6571-1080 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUF01000012.1 Nitrosomonas nitrosa strain Nm146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6570 28 100.0 32 ............................ ACAAATAACATTGAAGGATGCAGCCATTTGAT 6510 28 100.0 32 ............................ TATAGAAAAAAGCAGAGAGAAAATCTTCTTTT 6450 28 100.0 32 ............................ TGTTGAGCCGAACTCAACGCGGCTTGTATTGT 6390 28 100.0 32 ............................ TAAGAATGATTAAAACAGGAAGAAGAGGCCTT 6330 28 100.0 32 ............................ ACGATCCTTGTTGATTACTACGCCCAGGCTGA 6270 28 100.0 32 ............................ AGTAAAACAATCTCTCTTCATTGTTGCATAAA 6210 28 100.0 32 ............................ AGGTGATGCTCTGTATAAAGCAGCCCGTAGCT 6150 28 100.0 32 ............................ AAGAACTTGATCACGTTACGCGCCGAGCGCCG 6090 28 100.0 32 ............................ ACCAGCTAATCGTACGAAATTAACATGGGATT 6030 28 100.0 32 ............................ TTGAGCGGATACCAGCGGCTAAATTCTCGATT 5970 28 100.0 32 ............................ AGAAACACCAGTAGGCACCCGAGCATCATCTC 5910 28 100.0 32 ............................ AGACTAAAATCTCTCGCTGGCTTTCTTCCCAT 5850 28 100.0 33 ............................ CTCTAATAGGGTCATTGCTGCCATCTTATTTCC 5789 28 100.0 32 ............................ AATCAAAGACTGATCATCGAGGAGCTTGTTAT 5729 28 100.0 32 ............................ TGTATGGAGCAGTCACGATGACTGATTTAAAT 5669 28 100.0 32 ............................ TGCCTGTTCCATCAAGAACGTCACATCTATCC 5609 28 100.0 32 ............................ ATTACCTGATTGTGATATTGCAGAGCTTTGGC 5549 28 100.0 32 ............................ TTTTTTCACTTGCTTGGATAATGGCTGTTTGC 5489 28 100.0 32 ............................ AGAAAGAACCAGCGCAAACAAAATAAATAATA 5429 28 100.0 32 ............................ TTTATTGTCGTCGTCTCCAACAATCACCCTTT 5369 28 100.0 32 ............................ TTACAGCCGAGCAATTACTGCCAGCCCTATCC 5309 28 100.0 32 ............................ ACTTAGGCATAAATATGGATGGTGTTTTCTTT 5249 28 100.0 32 ............................ GAACCAGCGCCCAATTTCTTCGACGCCATAGT 5189 28 100.0 32 ............................ ACGCTTATGCGGGCATAGCAGGCGATCAACAT 5129 28 100.0 32 ............................ ACTCGAACGTTACCGCGTGGGGCTCAGGCATT 5069 28 100.0 32 ............................ TTCGGGCCTATTATCTATCCAGTTTGCACCTC 5009 28 100.0 32 ............................ TATATACATATGTTTTAAACGTTGATTAATAT 4949 28 100.0 32 ............................ GTATATAGGTGGTGGTGCCCGCTACTTGCATC 4889 28 100.0 32 ............................ GATCGAGCAGATAAAAAGCAATCTGCTCCTGC 4829 28 100.0 32 ............................ TGGTAAGGGTGATGAATGGAAATGGGTTGATT 4769 28 100.0 32 ............................ ATTACCGACACCGGCACCGGAATCCATGCCTG 4709 28 100.0 32 ............................ AACAACCAACTGTTCAATCTTTCCACGGTATA 4649 28 100.0 32 ............................ GATTAAATGAGGGCGAAACCATTCCAGACGGT 4589 28 100.0 32 ............................ TATAAGGGATAATGATTTATAAATTTCTTTTG 4529 28 100.0 32 ............................ AATAATGTAGCGATCCGCGCCGAGATTATGGC 4469 28 100.0 32 ............................ GCAAGATGTAATTGACTCGGCAAAGCGCGTAT 4409 28 100.0 32 ............................ GACGGACAGGCTTTGCGGCCTGGATTGAGCCG 4349 28 100.0 32 ............................ CTGATCGATTTCGGCCTGATCTCGATACTGGT 4289 28 100.0 32 ............................ TTATGGAGCGATCCGATTTCGCCGCCTGTGCC 4229 28 100.0 32 ............................ CAAGGCAGGCGGCACCAGCAGCACGTTTGGGT 4169 28 100.0 32 ............................ ATCCATCAGTTCGGCGGCGTCATCAAGGCAAA 4109 28 100.0 32 ............................ TCCGGCATAAGCCCCGAATTTATCGAGCTGAC 4049 28 100.0 32 ............................ CCGGTAGGCCGGAATCGGTGCGCCTTGTTGGG 3989 28 100.0 32 ............................ AGATAACCATTGATCACGCTGTCCGCATCCAG 3929 28 100.0 32 ............................ TGCAGAATCCGCAACGAGGCAACCTCTGAAAA 3869 28 100.0 32 ............................ GTTGCAGGCTTGCCCGGATGCGTGCATCGTCA 3809 28 100.0 32 ............................ AGGTCTGCATATATGTGCCTGAGCCGGTCACG 3749 28 100.0 32 ............................ AATCACCGCCGTCATAGGCGATGCTTTCTTTC 3689 28 100.0 33 ............................ CTCACGGACACGTCTTTTTGCAATATAGGGTTC 3628 28 100.0 32 ............................ GTGACATGAAAACGCTTGCAGAATATATCCCT 3568 28 100.0 32 ............................ AAAACCCGCGCCGAGCTGGCCACTTACCGCCC 3508 28 100.0 32 ............................ AATAGTAATAAAATTCGTGATATTCACCTCAA 3448 28 100.0 32 ............................ CATGGGTTGTGCAGCCGACATCGCTTGCTCAG 3388 28 100.0 32 ............................ AGGGAGGCGCATAAGATGGCGGGCAATAATAG 3328 28 100.0 32 ............................ TGATCAATACTAAACTTTTAACACCGCGCAAT 3268 28 100.0 32 ............................ ACACCTCATAAAAAAATTAATCAAATCTCTAC 3208 28 100.0 32 ............................ TGCGGTATCGTGAATAGTCACTTTTAGCTCAA 3148 28 100.0 32 ............................ TGGTACTGTTACTAAATTATTTTTTCAGGGTC 3088 28 100.0 32 ............................ GATCAGGCCGGTTTCGCCAATCGCGATTTTGA 3028 28 100.0 32 ............................ ATCATCATCGTCGGGACGGTTTAATAATGGAC 2968 28 100.0 32 ............................ ATAACGCCAGAGCAAAAGCCAAGGAAGAATTC 2908 28 100.0 32 ............................ TATACTTTTTTCGTAATCCGCTTTTGCCTGAA 2848 28 100.0 32 ............................ ATCAGAACCAACGTCGAAGGCTATCTCGAAAT 2788 28 100.0 32 ............................ ACATGGCTGATCGTTCCGGTAAGCTGGCTCTG 2728 28 100.0 32 ............................ AACGTTTGGCCGCTGATGCAGAGGATACAGCA 2668 28 100.0 32 ............................ TGCAGATGAATGCCAGTAATCAATAAATTTGT 2608 28 100.0 32 ............................ GATTGTGAATATCATAAAAATCTCCTTTTTTT 2548 28 100.0 32 ............................ TCGGCCCGGTAGATCGCATCTCGATAAATATG 2488 28 100.0 32 ............................ AATGACGGTCGAAGCATGGTCACTGGCACTGA 2428 28 100.0 32 ............................ GCACCCAGGCGATTGTCGCGCTTGGCAAGCTG 2368 28 100.0 32 ............................ AGCTCAGCCTTCGATCTCTTCGAAAAACTGCG 2308 28 100.0 32 ............................ AATCGCTGGATTCGATCGCCGGGCTCTATACT 2248 28 100.0 32 ............................ TGAAGATCGCGGCGGAAAGCCAGGACGATTTC 2188 28 100.0 32 ............................ AATCGATAAAGATTTCTTGGTTCTCATTACTC 2128 28 100.0 32 ............................ TTGGCTTCCTTCGTTGAGCCAGCTTTGTATAT 2068 28 100.0 32 ............................ TTTTCCAGCGGGAGGCCAAATGCCCACCAGAT 2008 28 100.0 32 ............................ TGAGTTGTGATGCAGTATCACAAGCAGGCTGT 1948 28 100.0 32 ............................ TCATTAACTGGATTCTCAGACGAAGAAATAGA 1888 28 100.0 32 ............................ TGTTGTCGCGGTTGATTGCTATGATCCGATCA 1828 28 100.0 32 ............................ ATTAAAGTAGTCAAGTGGGTTATTCGCGTATT 1768 28 100.0 33 ............................ AGTAACGGTTCATCGAATCTCGGGTCATTCAGT 1707 28 100.0 32 ............................ TGACTGGCATACATTAGACAGGATAAACCCTG 1647 28 100.0 32 ............................ ATACGGAAACAAAGCAAAACAAGAGCTATCGG 1587 28 100.0 32 ............................ TTTAAACCCTCAGCAATCGCATCTTCCTCAGT 1527 28 100.0 32 ............................ AGGAAAGGGACGCCCATGTCGCGCAATGCGCG 1467 28 100.0 32 ............................ TTGCGTGTCGCTCTTTTACATCGTCACGGCTA 1407 28 100.0 32 ............................ AATGAGATTGGCAAGAGCGCAACCCAGAAACG 1347 28 100.0 32 ............................ TCATTGTCATTGATGAGGTTCAATATCTCTGG 1287 28 100.0 32 ............................ TACATCAACGTCAGTGGGACATTCTCCACTTC 1227 28 100.0 32 ............................ AGATACATAAAGCACTGACCGTCAGGGATAGT 1167 28 100.0 32 ............................ ACGACGCTTTAGCTAACATCGAAGAAACAATT 1107 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 92 28 100.0 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTGAAACCGTTTTTTCGCATCCTTCTAAAATCGATTTTGTCGCCAATGCAAAAGCGCTGGGTTACGAAATTGTGCTGGTCTTTATTCACCTTGAACAGACACAACTCAATCTCGCGCGTATAGCGCAGCGGATGAGCGAAGGCGGCCACGCTGTGCCGGATGAAAAAGTTAAGGCGCGAATCCCCAGAGTATTGCAATTGATAAAACAGGTTTTACCATTATGTGATCAAGCATCGATCTTGGATAACTCTCGTGCGGATAATCCGTTTCAGCAAATAGCGGTAATACGCAATGGGTGCCTTGAATTAAAACAAGCAACTGTTCCAGAGTGGTGCCAGGAACTGCTATCGGATTATTTGTAAGTTTTATACCCATTTTTTTTCGCTCTTTAACAATACATACAAAATCAGTTACTTATTGATGCTGGAAAAATATTGGGATTTTTGCTTGGTTTCATATTAAACGATTGCTGCTTATAGTTCTTTGGATGCTATACTTC # Right flank : TGAAACAATGGTCGGACGGATCTTCCCTGCCCTTATTGAGCTAACCTATTGAATAGAATCGATATAGTTTTATTATGGATATTATTGTAGGCATGTAATATATTAAATATATTTTGTATATTATTTATTAATTATAATATACGCATGTATATCGCCCGTGTTCCCAACCGTAAATCCAAACCCACAATTTTGTTAAGGGAGTCGTACCGTGAGGGGAGTAAAGTCCGCACACGCACTCTCGCCAACTTAACATCCTGGGCGCCAGAGCGAGTCGAAGCGCTGGATCGTGCTTTGAAGGGAGAGTTTGACAATTGCTCAGGCGACATGATCAGCGGTGCTATTTTTGGCGTGTTGTTTGCGCTAAAGCAGCTAGCTGATCAGGTGGGCATCACACAGGTGTTGGGTAGCGCACGGGAAAGTCAATTGGCACTGTTTCTGATCTTGGCACGCATAGCCCACGGCGGATCGCGCTTGTCAGCGGTGCGTTGGGCGGACCAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //