Array 1 2897174-2898701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064392.1 Pseudomonas aeruginosa strain SRRSH15 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2897174 28 100.0 32 ............................ TTTCGCCTCCAGGGTCGGCCGCAGGTTTCGCT 2897234 28 100.0 32 ............................ TGGGAAGATGCGGACCCCGACAACCTGACTGA 2897294 28 100.0 32 ............................ TCGACCTTCTTTTCCCAGGTGGCGATGGCGTC 2897354 28 100.0 32 ............................ GGGCGCAGGATTCGCAAGAAAGGCTTCGCCAC 2897414 28 100.0 32 ............................ TTGGGTTGCAAACATGTTCATCGGTGTTTCTC 2897474 28 100.0 32 ............................ TGGGGAAGCCATGTCCATGGTCGTTTAATGGC 2897534 28 100.0 32 ............................ TGCTGCTGCGCCTGTTGATCTGAACGCCCATC 2897594 28 100.0 32 ............................ GGTGGCGGTCGCTGGCGAGCCGCCGTTGCTCA 2897654 28 100.0 32 ............................ TACATGCCGTCGAAGGGCGATATCTACATGTT 2897714 28 100.0 32 ............................ ATTCTTATCGGGGCTTTTTATCTAACCTTCTA 2897774 28 100.0 32 ............................ ATGAAAAGCATCCCCTTCGGGGACTTGTGGAA 2897834 28 100.0 32 ............................ TTCCGCTCCCGGCCGGCGGCGCGGCCCGCCCC 2897894 28 100.0 32 ............................ TCGATCACCATGACTATGCGGTATGCGCATCT 2897954 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2898014 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2898074 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2898134 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2898194 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2898254 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2898314 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2898374 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2898434 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2898494 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2898554 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2898614 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2898674 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2909774-2907226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064392.1 Pseudomonas aeruginosa strain SRRSH15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2909773 28 100.0 32 ............................ ACCAGCCAGTCAGGCGGCGGCGCTTTTGCCCT 2909713 28 100.0 32 ............................ TGGTCGTCCAGCTCGACGTCGATCCTAGTTGT 2909653 28 100.0 32 ............................ ACAGCCCCTGTAGATGCGGGCAAAGGCCCTCA 2909593 28 100.0 32 ............................ AGGGGGATTACGACGGTGACTAAGTACCTCGT 2909533 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 2909473 28 100.0 32 ............................ ATCGTCTTCGAAGGCCAGCCGGTGCTCTGCAA 2909413 28 100.0 32 ............................ ATGAGGGGCTTCAGGCTACCGTCCTGCAACGA 2909353 28 100.0 32 ............................ TGATCGCGCGGGAGCGTGTCCCGGCAAAAAAG 2909293 28 100.0 32 ............................ TGGATGCTATCCATGGTGATCTCCATAACCTG 2909233 28 100.0 32 ............................ AGTTCGTGAGCCTGATCGCGCGGGAGCGTGTC 2909173 28 100.0 32 ............................ AATAACCCGCATTGGCCCCATATAGCTAACAA 2909113 28 100.0 32 ............................ CGGTGGCTATGGGCTGGGCGCTGCATCACTGG 2909053 28 100.0 32 ............................ AGGAGGAAGAAAGCTATTCGCAGCAGGACGCG 2908993 28 100.0 32 ............................ TGGCCGCAGCGGTGCTGAGTCACTGCGAGACC 2908933 28 100.0 32 ............................ GACCGCTACTGCGCCTGCTGCTGTGGCTGCTC 2908873 28 100.0 32 ............................ TGGATGACCCTGCCGGCCGGCACCTGGAACTC 2908813 28 100.0 32 ............................ TTGGTGGCGACCACCAGGCCGTCGCGCACGAA 2908753 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 2908693 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2908633 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 2908573 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 2908513 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2908453 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2908393 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2908333 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2908273 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 2908213 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 2908153 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 2908093 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 2908033 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 2907973 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 2907913 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 2907853 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 2907793 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 2907733 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 2907673 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 2907613 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 2907553 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 2907493 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 2907433 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 2907373 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2907313 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2907253 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //