Array 1 75626-76321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAQ01000019.1 Porphyromonas gulae strain COT-052 OH3471 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 75626 36 100.0 30 .................................... CTATCTGTTTTTTCTGCCACGCCGTTAGCC 75692 36 100.0 30 .................................... CAAAGACTGATTCAGTAGATTTATCGTTAT 75758 36 100.0 30 .................................... AGATATAGGTTGATATCTAAAGGAGTAAAC 75824 36 100.0 30 .................................... TAACTATCTAACTACTAACTACTTATATAC 75890 36 100.0 30 .................................... TTGTATCTAATTCACCTGAAGGTGTTGGTA 75956 36 100.0 30 .................................... ATCCAGTATGCACTGTTGTTTATCTCAACA 76022 36 100.0 30 .................................... AATCCCATACCCAAGTATCAGAGCCTGAAG 76088 36 100.0 29 .................................... AGAATGTTCCCTCGCTGTTTCTTTCTACT 76153 36 100.0 31 .................................... CTGCAGCACCTTTCCGAAATCCTCGCCGCGC 76220 36 100.0 30 .................................... TCCTTTTAATTTGTACTGTTTATCCTCATA 76286 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 31 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : AAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCATGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCGG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAGATGGATAGAGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATTTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTCTATGACCGCTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 64896-61897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAQ01000013.1 Porphyromonas gulae strain COT-052 OH3471 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 64895 30 100.0 37 .............................. TTTGTGCGTTATGTTGTCCGTCGAGCCGTATGCCTTT 64828 30 100.0 35 .............................. AGTCAAGAAAAATTCACCGCACAGCTATCTCCTGA 64763 30 100.0 35 .............................. TAAAACCCGATCGAGTGCTGCATTCCGCTTGTGCG 64698 30 100.0 36 .............................. GTTGCGAGGTGGACTGGTGTCCACGCTTGTAAATGT 64632 29 96.7 36 .......-...................... CGGCGCGCAGGTGAAAGGCATCCTGACAGACATCAT 64567 30 100.0 37 .............................. TTCCGTGCGGAGTAACAAACCAACTGGGCGATAGGTC 64500 30 100.0 38 .............................. AAGAGTATCCAGCGTTCGACTGGGTGGAGGTTGACAGA 64432 30 100.0 37 .............................. GTAAATAGAGTATGAGCCGTGAAACTCTCCTCCATGT 64365 30 100.0 36 .............................. CCTCCACAGACGCGGATGAAGAGAATCCGGAGCTGA 64299 30 100.0 34 .............................. GACCTCAGCAGCAGCGATGTGCCTGAAGGCTCCT 64235 30 100.0 35 .............................. AATTCCTGCCTCAAAGCACTCAACTGCGATATTCA 64170 30 100.0 36 .............................. TAATTATTGGTTGTGATGGAGTATCTAAAGCAGACT 64104 30 100.0 36 .............................. CCCGTCTTTCGATGTTCCGAAGTGGCTAAAGGAGAT 64038 30 100.0 36 .............................. CGCTATGCCAAGACCGAAGCACCTGTACCGTCTCCG 63972 30 100.0 35 .............................. TACGCTTGTAAGCGTTGTGATCATCTGTATGACAT 63907 30 100.0 35 .............................. CACAACAAAAAATACAAGCTCGGTGGGCGTTTTGG 63842 30 100.0 36 .............................. CTTCCGCCGCCTCCGCCATTGACCATGCGCCACAGT 63776 30 100.0 34 .............................. TGCCTGTCATCACCGAGACAGAGCTTGAGCGCAA 63712 30 100.0 38 .............................. AAAAAGAACTCCGGGCAAAAGCCCGCGCCATGAAGACA 63644 30 100.0 36 .............................. GTGCTTGATGTATCCTAGCCAAATTTATATTGACTA 63578 30 100.0 37 .............................. GGCGTATCCATGTGGTGCGCCTTTTTTTGTTCATGTC 63511 30 100.0 36 .............................. TGCATGGAAGCTGATAACAGAGCATAATAAGCCCGA 63445 30 100.0 35 .............................. GAGCGCAAGAACTACACTTACATGCAAGATAAAGA 63380 30 100.0 36 .............................. GAGCTGGGCGAATCAGAGGGTCGAAAAATTTTTGAG 63314 30 100.0 37 .............................. AAGATATTTCTGCCTTTAAGCAGAGTGGAAAGATTAT 63247 30 100.0 36 .............................. GAGGGGTTTGGTTGAGCAAGTTATGAAAGATGAGAC 63181 30 100.0 36 .............................. TACACAGCTCCCCTCCGCGCTTATCTATCTGCTGTA 63115 30 100.0 37 .............................. TGCGAGAGAAGCGCAAGCTTGTAGAGAGCAATATAGT 63048 30 100.0 36 .............................. GATTTTCCCTGTTTGTAAAAAATCTCTTTAATAATA 62982 30 100.0 34 .............................. GTTCAAATTCCGTTTAATCTTCTTTTTTTTTCAT 62918 30 100.0 36 .............................. GGAGAAGTGGGGCAATACGCCTGCCCTCCTCGTGTA 62852 30 100.0 36 .............................. CGGGATTCGGATACAATAAGGCATATACTTACTACA 62786 30 100.0 38 .............................. TTTGTAAGTGCAAAACTTCCATATCCATTATTTATAAA 62718 30 100.0 37 .............................. AAAGGAGGATCAATGGAGAAGACATTAAATCAAAATA 62651 30 100.0 37 .............................. ACTATATTGTCTGAGATATTTAATGAAACAGGACTAA 62584 30 100.0 36 .............................. ATGGAAGTAGGGCCTTGGAAATTCCAACCCGAATGG 62518 30 100.0 36 .............................. CCAATATATAGCCAAACCAAAAGGCTGTTCTTTCAC 62452 30 100.0 35 .............................. CTTCTTGGCTATTCTTAGGCCTGTTCTTTTTGCTA 62387 30 100.0 36 .............................. AAGATACCGAGTAAGCAAAGATACAGGTATCCACTA 62321 30 100.0 36 .............................. TTATAATATTCCTGAAAGAATCGTTATAAATAAAAA 62255 30 100.0 36 .............................. AATAGCTTCATCTCTTGCTATATAATAATATTCTGT 62189 30 100.0 36 .............................. TAAAAAAGTATTAGGAATAAACCATAAAGGATAATA 62123 30 100.0 37 .............................. CATTTGTGCATCTGCCCGAAATAAAGAGACTTTAGAT 62056 30 100.0 36 .............................. GCATCAAAGCAGAGAATCAAAGGCAAATGTTGGAAA 61990 30 100.0 34 .............................. AAAGAAAGAATAGACGGGTTACTATTACTATCAA 61926 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TACGTCTGTCGTATCCAGAATTTCCTCCCAGGGCTTTCCTTCCCAGTCGCCGAAGTTCATCTCCTTCAGCCGATCGTCTCGGATGGCATCGGGATAGCCGCAAAAGGCCGCCAGCTTGGCAGCACGCTGCAAGGGACTGGTAAAGACAGCCTCCGGATCGAGGCCTCTGAGACGGGCACACGCCGCCGTAGCCTCCTCTTCGAAGGTATCGCGAACGTCCACATCGGTGAATCCGTAGCAGTGCTCATTGCCATTGAGCAGCACCGAAGTGTGGCGCATCAGATATATTTTCATCAGTGGATTATTAGGGTATCGGTCGGAAAAAAGCCTTCCGAGTCCGACAAAGATAGTAGAAAGAGAGTGCATCTGAAAACAGACCAATCGCGTGCTATCGATCAACTGAGAGGATGGAAGTGCTTTTGTATTCCGGTTCGGAAAATTGCCCGATCTGCATCCGTAAAAACGTGGAGCGAGAATTTTTTCGTTTTGGTGGAGGACTT # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGGCAGAAGGATGGCGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGACGGGAGCTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGTTCTTCAGTTCTAAGAGTTTGACTTCCGATATCTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 143926-143295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAQ01000013.1 Porphyromonas gulae strain COT-052 OH3471 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 143925 37 100.0 37 ..................................... ATATTCAGTTACTTCCATTTATTCTCCAGTAATAAAG 143851 37 100.0 37 ..................................... TTCCTCTGTTTTTTTATTTGTTTTTGCCATAAAGAAA 143777 37 100.0 35 ..................................... CCATAGAACTGAAGAGAAAATTCTCCAAAATCTTT 143705 37 100.0 42 ..................................... CAAACTCATCATTGTTAAATACCAAAGCAAGCATTCCGTTTT 143626 37 100.0 36 ..................................... ATTTTTCATAACTATTTTTGTGCTCCTATTAAATCT 143553 37 100.0 38 ..................................... AGATTTTTGAGCAAGAGCCCAATCGCAAGTATTTTTCG 143478 37 100.0 37 ..................................... ACTTTCTGAGCTGTCGCAATCATTCCTATGTGACCAT 143404 37 100.0 36 ..................................... ATTACTGGGTGCGATTTGAGAATCTAATTCTTCAAA 143331 37 97.3 0 ............C........................ | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 99.7 37 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTTCTTCCTCTCTGTCAGCATTGTTATACCGCAGCTTGGATGAGCGGACATCCGACCCCACCCAAGAGCCGGAGGAAAAGGAAAAGTATAGTGGTTTAGTTTTTCGAAAAAACTCGAACCACGCATCGCTCTTTGACGTACTGATTATCAGCCGGTTGCAAAAACAACTCTTTTCTCCCGTTTTTCGAAAATAGGAGAAAACCGGAATTGGGACTTTTATTTTCGAAAAACAGGGGCGTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTCGAAAATGCCAAAAACGAAGGTTCCCTCTTTCTGATTTTCGAAAATAGAAAATCAGCTAATCTGATTGTATATCAATAAGATATAATCAGCTCAACAGCAAAAATGGTGTTATAGCTACATTTCTCAACTTGCATTTTCGAAAAAAATAGAATCGTTCTCTGCCAGTGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCACTCAAGTT # Right flank : TCTTGATGCTCTACTCATCATCACTTGGACTTTCCAAGTTAGATTTTGGAGCGGTTAATATTGTGTTTTGCACAAGATAAGAGCACATAATCACAGCTTTCCGCTTGTGTGCGAGCCAAGGCCGTTTGCGCACCATAATTTTCTATTTCGATGCTCCGAAAAACGTGGCGCGAGATTTTTTTCGCTGTGGTTCGAGAATTTTTTACTTCCCGTGCCACAGCGAAAAAAATCCCGCGCCGCTTTTCCCGAAAACACGCGCCACAATCGCAGCAATTGCGGTTCGAGAAAATCCGATCGGAATAATTGAAATCCGAGACTTCCGAGACCTCCGAAGCCGGTTCTAAGCTCTTACCCTTCTACAACATCTCGGATACGACCCAAAATATCCTGCTTGATGGCAGACAGATGCGCTCCCAATTCGCTCTCTGTCGGGAAAGAACCGTATGGATAGTCCTTGCCTTGGAAAGTATAGTGCATCGAAGAGAACTTCACCCCTGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //