Array 1 26733-24849 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQJC01000020.1 Neisseria meningitidis strain M29047 M29047_CHA3757A44_cleaned_ctg_33341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26732 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 26666 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 26600 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 26534 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 26468 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 26402 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 26336 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 26270 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 26204 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 26138 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 26072 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 26006 36 97.2 30 ............A....................... AAGCATTGACGATATTTGTGTGGCGTTGCA 25940 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 25874 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCATA 25808 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 25742 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 25676 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 25610 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 25544 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 25478 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 25412 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 25346 36 100.0 30 .................................... ACCAAGATATATCAAAATTGTAGATGAAAA 25280 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 25214 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 25148 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 25082 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 25016 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 24950 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 24884 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //