Array 1 3728-2859 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADT01000371.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_425_length_4766_cov_19.9311_ID_849, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3727 28 100.0 32 ............................ CGGTCATTCCAGGGTTGTTAGTGTCGGCTGGA 3667 28 100.0 32 ............................ AGTGGCGGCTCCCGCGGGGCGTGCGATGCAAG 3607 28 100.0 32 ............................ ACCGCAGCCCAAGCAAGCGTCAGCGCCGACTT 3547 28 100.0 32 ............................ AGTAGCAGGCAGCCCAGCGCGACCGAGACAAC 3487 28 100.0 32 ............................ TCAGCCGCATGACTCCTCGCAAGAGCCGCCTC 3427 28 100.0 32 ............................ TCGACGGTAGCCCATCGCCGGACTGGTTGCCG 3367 28 100.0 32 ............................ TTTACCCGTTAGCCGCATAAGGAAATCCACCA 3307 28 100.0 32 ............................ AGCTAGAGAGCTAAATCCTGCGTGGAACAGGA 3247 28 100.0 32 ............................ ACGTCGAGGGGAAGTGGGATACGCCTACGATC 3187 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 3127 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 3067 28 100.0 32 ............................ TCCATGTCGCTCGGGCCAGTGACGGTCATGAT 3007 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 2947 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 2886 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90-1563 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADT01000595.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_493_length_4125_cov_22.0788_ID_985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90 28 100.0 32 ............................ TGTTTCCGAAGTGCAAACGGAACTTTGGCGAA 150 28 100.0 32 ............................ TTCACGCGGGCGTTCGCTTCGTCCAGCTCGGC 210 28 100.0 32 ............................ ATCGGCTGGTCGCTGATCCCGCTGGGTTGGAA 270 28 100.0 32 ............................ AAATCACGCCGCCCGAATGCCACTTCGGACTC 330 28 100.0 32 ............................ TCAACTGGGGAATGTCTACTTGCGAAGACTGC 390 28 100.0 32 ............................ TGCTCCGGAAGGTACTGAAGCGCCCAGGTCGG 450 28 100.0 32 ............................ AGCATTCGCAGCCCTGCAATGGGGCTGCTCGT 510 28 100.0 32 ............................ TTAAGCCTCAATCGAAGTTCCACCCGGCTTGT 570 28 100.0 32 ............................ AGGTGCTGGCGTCGATTGTCAGCGCGGTCAGA 630 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 690 28 100.0 32 ............................ CTCGACGGGGCTTGGCGCACCGGCGCCACTCC 750 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 810 28 100.0 32 ............................ ACCGTGATTGTGCCCATGCGGCGCATGTGCAT 870 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 930 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 990 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 1050 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 1110 28 100.0 32 ............................ AGCAATGCGATCCGAGGACTCCAGAACGGTAT 1170 28 100.0 32 ............................ AACTCCCGCGCCAAGGGCGCCCGCGTAGAACT 1230 28 100.0 32 ............................ GATACAACCTGGCGATGGGGAACCAGGTGGAT 1290 28 100.0 32 ............................ ATGGTGACGCTGCACGACGGCCGCCAGGTGGC 1350 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 1410 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 1470 28 96.4 32 ........................A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA ATAGGC [1482] 1536 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTAG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1211-223 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADT01000431.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_849_length_1519_cov_22.3384_ID_1697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1210 28 100.0 32 ............................ AGGTGCCGTTGTAGCGGCAGCGCCAGTACAGA 1150 28 100.0 32 ............................ TGGACCAATCTGGAATGCATTGGCGAAATACA 1090 28 100.0 32 ............................ CAGATCGCAGACGGCACCGGCCCATTCGACGA 1030 28 100.0 32 ............................ TTCAGGCCGGCAAACAGGCTGGCGTCGAGCAC 970 28 100.0 32 ............................ AGGGCGTCCCCTTCCAATCTGAGCGTCGTCAC 910 28 100.0 32 ............................ ATTCCGCCCAGCCATATCCCTAGGGCTATCTC 850 28 100.0 32 ............................ AATCCGTCCAGGCGGAGTACGCAACCACCGTC 790 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 730 28 100.0 32 ............................ GATGACGAAAGAGCCACCGCCGCCCTCCACCG 670 28 100.0 32 ............................ TCCCATAGACTTGCCGATCTCGGCTGCGGCGC 610 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 550 28 100.0 32 ............................ TGCCCGCCATCAGCGAAACCGAACATGCTTGT 490 28 100.0 32 ............................ AGTGGGCCGTCCCACTCAGTGAAGAACGCCCC 430 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 370 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 310 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 250 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACACTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGTGGTAACCCGTCGTTGAATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //