Array 1 97878-95591 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOH01000004.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45465 45465_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97877 29 100.0 32 ............................. GGTGCCGATCAGATTCACTTTGCCTTGCGCCT 97816 29 100.0 32 ............................. TGTAACGTCGCGTAATGGCAAAGTCTGGTACA 97755 29 100.0 32 ............................. GGCAAGGGCAACAAGTCGCGGGCTATCCCTTG 97694 29 96.6 32 ............................G AAGTCGAGGTTGAGGCTAAGCGGCTTGCTGCC 97633 29 96.6 32 ............................G CTGTAGGAATAGCCGGCAGGCGCTGAATACAG 97572 29 100.0 32 ............................. AGTCGTTGAAAGTCCGTCGTGTCGAGGTCCAT 97511 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 97450 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 97389 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 97328 29 100.0 31 ............................. ACTACTTTCCCATGGTCGTAAAGGTATGTTG 97267 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 97206 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 97145 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 97084 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 97023 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 96962 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 96901 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 96840 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 96779 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 96718 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 96657 28 96.6 31 ........-.................... ATGTGAAGGTGATGGTCGAATGAGTGCCGGT 96597 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 96536 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 96475 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 96414 29 100.0 32 ............................. AAGGCCACTAGACGCGTATTGCCACAGTTCGA 96352 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 96291 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 96230 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 96169 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 96108 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 96047 29 100.0 32 ............................. AGGCCCCCACGTCAACCCCTGCCACGTCGAAG 95985 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 95924 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 95863 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 95802 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 95741 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 95680 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 95619 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 98.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //