Array 1 172794-174042 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLWP01000003.1 Escherichia coli strain MOD1-EC6498 MOD1-EC6498_3_length_294030_cov_29.7381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172794 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 172855 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 172916 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 172977 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 173038 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 173099 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 173160 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 173221 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 173282 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 173343 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 173404 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 173465 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 173526 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 173587 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 173648 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 173709 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 173770 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 173831 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 173892 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 173953 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 174014 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199745-200444 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLWP01000003.1 Escherichia coli strain MOD1-EC6498 MOD1-EC6498_3_length_294030_cov_29.7381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199745 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 199806 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 199867 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 199928 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 199989 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 200050 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 200111 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 200172 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 200233 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 200294 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 200355 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 200416 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //