Array 1 331298-338700 **** Predicted by CRISPRDetect 2.4 *** >NC_020419.1 Candidatus Endomicrobium trichonymphae, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 331298 32 100.0 33 ................................ TCCGTTACTGCGTAATAGCGTATATCAGCACCC 331363 32 100.0 33 ................................ TGGATACCGCCACCACCGCCGCCACCTCCGCCG 331428 32 100.0 34 ................................ CCACAACACACGAAGTTATTGACAACAATATGTA 331494 32 100.0 34 ................................ TGCGGAGTTAATTCCATAGTACCTAAAGCAGTAT 331560 32 100.0 34 ................................ CCATTCGCGCCCCACAAAAAACTAGCTTTGCTAG 331626 32 100.0 33 ................................ TCTAAACCATTGTAATGATATATATCCATTTCT 331691 32 100.0 33 ................................ TTCCACGCGTAACTATTTACAGCGATAAACAAA 331756 32 100.0 34 ................................ TGCGAGTAAATGGGACAAAAAAGAAAGCCCTAAA 331822 32 100.0 35 ................................ TAAAAATGGAAAAGATTTGCTGTGTTATGAAAAAG 331889 32 100.0 34 ................................ CGATAACAGCCCAGAAAAATCAGGACTGGTAAAA 331955 32 100.0 35 ................................ CCAACTACTTATATTCCTCCACTGTGTTCCTGAAA 332022 32 100.0 34 ................................ CCTCTAATTCCAACTGACATTCGTATGCATTTCC 332088 32 100.0 32 ................................ TGGTATAAGATATTTTTTTTTCTGACCTTCAA 332152 32 100.0 33 ................................ TGTTTGCTGATTTATCTAAATCGTGGCGAGTAG 332217 32 100.0 33 ................................ CTAATGCGAGGTAAGGATTTAAGCCTGCTTCTT 332282 32 100.0 35 ................................ TCTATATATCTGCCACCTGCACGAGCCGCTCTCTC 332349 32 100.0 33 ................................ AAAAGTGATTGTTTGTTTGCCTGCTATCACTTC 332414 32 100.0 35 ................................ CTCAATACGTCCTCAAGCAGGTTCCTCTCTCCCGA 332481 32 100.0 32 ................................ TGTGCTTAAGTTTTGTATTACCATATATTCTG 332545 32 100.0 35 ................................ TGCTGTCATCCACCGCAAAAAGGTTGCACAGTGCG 332612 32 100.0 33 ................................ CTTGCAAGTGCAGCATTTTGCTCCTCAAGCTCT 332677 32 100.0 34 ................................ CTGCAAAGCTGTAAATACTGAAGCAAAATGGGCA 332743 32 100.0 35 ................................ TACAGCCGTGCTTCCAGTGCCAGTACCAACAACAA 332810 32 100.0 33 ................................ TACCACCAACACATATTAGCACCGCTAGTATAA 332875 32 100.0 34 ................................ GCTGCACCACATCCGTTATAATCGTAAATTGTTG 332941 32 100.0 32 ................................ CCGCCCGCCAGTAAACTTACGGTACAATGCCA 333005 32 100.0 33 ................................ AGAACAGCCAGCAGAGAGATGTAGAGACTATGC 333070 32 100.0 33 ................................ TTGTACGTATGTTGCCTAAAAGGGTGTGAAGCG 333135 32 100.0 33 ................................ TAATCCAAATGGTGATAACGGTGGCGATAATAA 333200 32 100.0 33 ................................ TGGCGATACCAGCGGCAATAAGTACTCTGCGAA 333265 32 100.0 34 ................................ TTGAATTTTAATTGTTTCAGGAGGTGCTAACTCT 333331 32 100.0 33 ................................ CTTCTAAACCTGTAACAAATTCTAACGCCTCAT 333396 32 100.0 33 ................................ TTGCATTCTGCTCGCTGCAAATTCATAGGCTGG 333461 32 100.0 34 ................................ ATAATTGTGCTTATCATTTTATTCCCCTTTAGAA 333527 32 100.0 34 ................................ GTCAAAAACCAGATTATTTAATATGCTTGAGTTT 333593 32 100.0 34 ................................ CTTAAATTTCGCATACGATAAATCATTATCAATC 333659 32 100.0 34 ................................ TGTGGCTGACCAAGAGCGGATAGCGAAAGCTCAA 333725 32 100.0 35 ................................ GCTTCCAAAACTGCTAAATCTTTTTTCATTCGGCA 333792 32 100.0 33 ................................ TGCAGGGGAGTATCCTGTTGAGGAAACGCTGGT 333857 32 100.0 35 ................................ TCGCAGAAAATCTTGCTCAAATCTAATACGGTATG 333924 32 100.0 33 ................................ CTGCCAGTCCGCACATTGCACGTTAATTATACT 333989 32 100.0 33 ................................ TTGTTTTGCTTGAAATCTAGCCAAAATGCCTGA 334054 32 100.0 33 ................................ CAAATCCGCGCCAGTTGGCGCATAAGATTTTTT 334119 32 100.0 35 ................................ CCGCAGAACAAAAAGAACTTGACGCAGAAATTGAC 334186 32 100.0 34 ................................ CAGCGTGGACGCAAGTGCTATAGACGGTAGTTCA 334252 32 100.0 33 ................................ TAAATAGGTTATACTGGTATCTATTTTTTTTAG 334317 32 100.0 34 ................................ CACTCTTGGCAAAATTTGTTTTCCTTGAGAAATA 334383 32 100.0 34 ................................ TTTACATCTAACCAGCTGGCTTATTATGACATAC 334449 32 100.0 34 ................................ TTGAGAGAGAAGTCCATTTTTGTATATATCCTTT 334515 32 100.0 34 ................................ TTGTTCTCCTTCGGGCGGTTCTGGCGCTGCGTAA 334581 32 100.0 33 ................................ ATCCTCGCGGGCATAGCTCTCGCAGGTGATTTC 334646 32 100.0 33 ................................ TTCTCTTGAAGCCCCATACTGCCACGCTGGCAG 334711 32 100.0 34 ................................ CAAACTGGCAATCGCCAGAAACTTTTCTGCAATT 334777 32 100.0 34 ................................ TTTACGGCGTTGCTCTGTTATCCCAAACATATCC 334843 32 100.0 34 ................................ ATTCACAGCTGTGTAATTACCATAATATAGCCTG 334909 32 100.0 34 ................................ AGCCCCTCTGGGCTGTTATAGTGTTCGGCAACCG 334975 32 100.0 33 ................................ AAGTATTTATCACTACAATCATATTTTTATTAA 335040 32 100.0 33 ................................ CCACAAATCTTGATATGGAGTTTTCAGCAACCA 335105 32 100.0 34 ................................ TTAGAACTCCCCGTTTTAACTTCGCCCCCATCTA 335171 32 100.0 35 ................................ CGCCAGTTCTGGTGTCCACTCATCGTGCTGGTCTG 335238 32 100.0 32 ................................ TCGCTATTAAACGCTTGTTGTGGCAGAGTATG 335302 32 100.0 33 ................................ CAGCAACATTAAGTGTTCCGCCACTGCTTCCTC 335367 32 100.0 34 ................................ AAGGGCTTGACATATTTACAAATATATATTATAA 335433 32 100.0 34 ................................ CGCCCTGAATATCCCGTGCTGGCTTTTAGGTGAT 335499 32 100.0 34 ................................ ATATCGCCTTCGTTATAGGTGCTATCAACATCCC 335565 32 100.0 34 ................................ TGTACACCAGCGAGCTTAATGACAGCAATGAACG 335631 32 100.0 35 ................................ AGGGTATGAATGCTTACGGAAGCTTATCTGCTGCG 335698 32 100.0 35 ................................ CGTACTCTCTAACTCATTGGCTTCCATCATTTATA 335765 32 100.0 35 ................................ CATTTCTGCCGCTTCACTTCTGCCCTTTACAGGCA 335832 32 100.0 35 ................................ TTTTTAGTGTAATACTTGCCTCAAGCTCAATAAAA 335899 32 100.0 33 ................................ AGCTCTAAATATCCCGTGCTGGCTTTTAGGTGA 335964 32 100.0 33 ................................ AAGAGATATTAGATATATTAAATCTGCCTCATA 336029 32 100.0 35 ................................ TATAGAAGGTTTAATGTGTACGCTTGAAATGTTTG 336096 32 100.0 34 ................................ GTAGAAAAAATCGTTTGAGCAGAATTACCAGCAA 336162 32 100.0 34 ................................ GTCAACAGCAAATAAGTTGCACAATGCGTATTTT 336228 32 100.0 33 ................................ CATATATCCTCTCTGTGCCGATTGGCACTTTAT 336293 32 100.0 34 ................................ TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA 336359 32 100.0 35 ................................ CTAAAAACGGCAACATCCTGCTCCATTTCGTTCCT 336426 32 100.0 34 ................................ ATTTATTTTCAGGTGCTTGTGCCTCTGGAACCTT 336492 32 100.0 35 ................................ TAGTGTCCCGCTCTGGAGTATAACCTTGATTACCG 336559 32 100.0 35 ................................ ACCTCATCAAAACTAATCCAAAAAACAAAGGGACG 336626 32 100.0 34 ................................ CAGTTTGGGGTAAGAGGCGTGCTGATTAAAACAC 336692 32 100.0 35 ................................ TACAGGGTTCATTTTAATCTTTTTCATTCCTGAAG 336759 32 100.0 34 ................................ TTGTCTGCGTTGCTGATATAATCTCTCTGCTTCA 336825 32 100.0 34 ................................ CTCTTAACCGTTACATTTATATCAATGACACTTA 336891 32 100.0 35 ................................ CCAAAATCTGCTTTCCAGCATAGCCTCTATATAAG 336958 32 100.0 34 ................................ TAAATTTGAGGAGCAGTGGCGGAGAAAAGCCAGA 337024 32 100.0 34 ................................ TGCATATCGGCTTTATTTTGGTTATCTTTATTCG 337090 32 100.0 33 ................................ CCGCCCACTACGGCTGGAAGCTTGTCTATTTCA 337155 32 100.0 35 ................................ GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC 337222 32 100.0 33 ................................ AAGTTCAAGCTCTAGCAGTTCCAGTAGCAGTAG 337287 32 100.0 33 ................................ AGTTCCGACAGGAGAAAAGAGTTCAACATTGTA 337352 32 100.0 35 ................................ CACTCTCCCGCTGCACCTCCTGTGTTGTACATCCT 337419 32 100.0 33 ................................ TAAAGGCGGATTTAGAGCAGGATTGCGATTGAA 337484 32 100.0 34 ................................ TTTATCCTCAAAATATATACGTCCGCCTTGTCCG 337550 32 100.0 35 ................................ GGCGGACTGGACGCGAAACAAAAAGCGGCGTTGGT 337617 32 100.0 34 ................................ TCTTGCAAGCGTGTTGGCTGGCGCCGTGACATCA 337683 32 100.0 34 ................................ TGCTTTCGCGGAACACAATTGCGTGAGATATACT 337749 32 100.0 33 ................................ TGAGGCTAATGACAGTACAGGTACAAATCCTAT 337814 32 100.0 33 ................................ CCATATTTTCAGCTTTTGTTTGCTCCGCCTGTG 337879 32 100.0 35 ................................ ATTGCAATCTCGTAATCTAACCTCATTTTTTCAGC 337946 32 100.0 34 ................................ TGCTTTCGCGGAACACAATTGCGTGAGATATACT 338012 32 100.0 34 ................................ TTCGCAGAAACGTTCAGTATCAGCGAAATTATCC 338078 32 100.0 35 ................................ GCAAAAGAAGGAGTAAATGATATAGTCTGTTTTCC 338145 32 100.0 34 ................................ AGTCCATCCAATTTCGTTTGATGGCAGTGGTTTA 338211 32 100.0 34 ................................ TGTGCTAAAAGGTGTTAAGACTGCAGCTGGCGGT 338277 32 100.0 34 ................................ TTGCAGACCTTGTTTCAGCTGCGGGCGGTGATGA 338343 32 100.0 33 ................................ CGAAGGATGTTCCCAATGAGTAAAGATAATAAA 338408 32 100.0 34 ................................ AGGGAATAATGTCTCAACTTGCTTCAGGATTAGG 338474 32 100.0 33 ................................ TGTGGCATAGATACTATCAAGAGCTGTAATTAA 338539 32 100.0 33 ................................ GCCGCCTAAAGAAAGAGCCATACAATTAGCTTT 338604 32 100.0 33 ................................ TAGTTAATGTAGCTACGTTATTAGCCATTGTAA 338669 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 113 32 100.0 34 GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT # Left flank : ATATCCGCCATTTATTTGGAAATAGGATTATATTATGTTGGTTTTGATAAGTTATGATATAAGTACTATTGATGCAGGAGGACAAAAGCGGTTAAGGAGGGTTTCTAAAGAATGCTTGGATTATGGACAGAGAGTTCAGTATTCGGTATTTGAATGTGAAGTTGACCCTACTCAATGGATTTTTTTAAAGGATAAATTATTGAATACTGTAAACTTAAAAAAAGACAGTATAAGGTTTTATATGCTTGGTTCAGATTGGAAAAGAAAAATAGAACATTATGGTTGTAAAAAACCTGTTGATTTACATGAAACGTTGATAATATAAGAGTTATAAAGGATTATAACGGTGCGAATGGTATGTAATTGATTGTTGTTTATTGGTATCGCACATTGAAAAATGAATAGAAATTGAGAATATGTCAATGGTTTTGTAATAAAAATGGGTGATTCGCATAAATTGTGAAAAATGTGTTGAATTTTTAATTATTTTTTGTTTAGCC # Right flank : TCTGTTAAGGGAAAGCGTTATGAGATATTCTTTTCTTTCATTTTAAGTTGTAAGGAGAGTGTGACTAAAAACAACAACAACTTTTAAAATATTATTTGAAAACTGTTGCGGGGAATGATATCTAAAAAAGATATGACTTAAAACTTATGTAGGGAATATATATCAAATTCTGGTTTTATCTTAAGATGATAAGGCAAATATATCTGTTATATAATGCATATAAAAGAGGATTCCCCGGCTACCAAAGCAGTCGGGGAAGAACCTCGGAAAAATTATTATAATAACCATCCTCTCTCAGATAAGTTACAAATTAATTATACTATTATAGTAAAATATTGTCAATAGCTTTTTATTTACAAGATGAAAAAATATAATATCTTTCTATAAATATTGAGTCTTTTGTTTTTGAGGATAGCTTAGGAGGTTTTATGAAAAAAAGGATTTTGGGACTTGATATCGGAATTGCTTCGGTTGGATGGGCTCTTGTTGAGTTTGACGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGTGGGCGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 344981-343493 **** Predicted by CRISPRDetect 2.4 *** >NC_020419.1 Candidatus Endomicrobium trichonymphae, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 344980 36 100.0 30 .................................... TACGTAAGTGTGATAAAAGTGCTTTGCATG 344914 36 100.0 30 .................................... ACCATCTCTGATATCGTCGTACTTGAATTC 344848 36 100.0 30 .................................... CTATATCAGCCATAGTTTTATATTCGTCAT 344782 36 100.0 30 .................................... TGTAAAAATGTTTAGATTAAGTTACTTTGC 344716 36 100.0 30 .................................... TAAAAGCAGGCGAGGACGTAATAATCCCTG 344650 36 100.0 30 .................................... CGTAATTCTCTCTATATTTTTTAACAATGT 344584 36 100.0 30 .................................... CCAATGTATACGATATGCCTGCTTTGGTTA 344518 36 100.0 30 .................................... TATCAGCGTATGCAGGTAATATGATATCCA 344452 36 100.0 30 .................................... CCAGCTACCGGAGTACGCTATGCACCTTAC 344386 36 100.0 30 .................................... GTAAGAAAGTTAATATATTCCGTACAATTG 344320 36 100.0 30 .................................... GGGCTTTACTGTAGTAGCACCCTTTAGTAC 344254 36 100.0 30 .................................... CTACGTGGTTCCCGTATGGTATTTACTTTG 344188 36 100.0 30 .................................... CACAGGCCGTAAAGGCTCTCAGCGAATCAA 344122 36 100.0 30 .................................... GGTTTTATGCTCTCAATCGCTGATATAATG 344056 36 100.0 30 .................................... TTCAATCCGTGACGTTCGTCGTATCTCTGG 343990 36 100.0 30 .................................... GCGTCCCATGTTTGTTTAATCGGTTCGTAA 343924 36 100.0 31 .................................... GAACCAAAAATCGCCATTGAAGCTGAATACA 343857 36 100.0 30 .................................... TGTAGATTAAACACTATAGAAGCATACGGT 343791 36 100.0 30 .................................... AAATCATTTGGATTAGATGCTAATGGTAAT 343725 36 91.7 29 ................................A.CT TGGAGACAGCACTGGGCTTGAAAATATTG 343660 36 100.0 30 .................................... CATCAAGAATATCACTGCTATCGCTATTAT 343594 36 100.0 30 .................................... AGAACAAGATGTCAATAACAACAAACCAAA 343528 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.5 30 ATTATAGCACATCTGAGAGAGGAAGGAAACTATAAC # Left flank : ACCTGATTTGGCGCTTACTACAGATATCATTACGGGATTTCCCGGAGAAACCGAAAAACACCATAAAGAAACATGCGATTTTGTAAAACAAATTTTGTTTGCAAGATTTCACATTTTCAGATATTCTTACAGACAGGAAACGAAAGCTTCAACATTTGGAAACAAAGTGCCTACAAGTGAAATAAAAAACAGGGCAAAAGATATATTTGAAATAGATTCTATAAAAAGAAAAGATTTTTTAAATAAAAACATAGGCACAAAAAGAAAGGCTGTAAAAACAGGAAAAAATAAGCTGCTTACAGACAATTATATAACTGTTAAACGACAAACTGAAGCGTGGAATGTAGAGTGTGGAACTATGAAAGCCTCCGGCAATAAAAAGAAGCAGAGCGGAATTTTTGAAGTTGAAATTACAGATACTTCCGAAATTTAATAAAGCCTGCTTACTAAAAATAGAAAACGCTAAATCAATTGAGTTTTCAATAATTTAGCGTTTGTCT # Right flank : CACCTTTGAGGACGAAGTGTCGTGGCTGCATATTATAAGTTAATTTGTTAAAAAAATACTAACTGCCTTGAATCTATTTGTTCAGCAAGTTGCTTTTTACCTAATATTATTTTCATTCTTTCGTATTGTTTCTCAGTAATCTCAAGCACTCTTATATTACCTTCCATCGGAGTACGCATCATCAACCTTCTGATATGTTTTTCAGAACTGTCCATTCCTCTGCAAATACGACAATATACAGAATACTGAAGCATATAATAACCGTCTTTTATTAAATTGTTCCTAAATTTTGCAGCATTATGTCTGTTTTCAGCAGTTTCTGTAGGTAAATCGAAAAATACAAGTATTCTCATAAATCTTGTACCTTCTTTTTTCATGCCGTTTTAAACTCCGGAAGTAATAGTTTATCAGGATTTAATTCTCTCGAAGCAATCATAAAAGACTCTGTTGTCTGACTTGCTGCCGTAAGAATATTACTGTTCTTATCATTAAAAATACAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAGCACATCTGAGAGAGGAAGGAAACTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //