Array 1 6336-7999 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMS01000234.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 579083-10 SEEH8310_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6336 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 6397 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 6458 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 6519 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 6586 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 6647 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 6708 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 6769 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 6830 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 6891 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 6952 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 7013 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 7074 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 7135 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 7196 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 7257 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 7318 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 7379 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 7440 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 7501 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [7543] 7543 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 7604 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 7665 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 7726 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 7787 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 7848 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 7909 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 7970 29 96.6 0 A............................ | A [7996] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 420-1241 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMS01000218.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 579083-10 SEEH8310_129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 481 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 542 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 603 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 664 29 100.0 33 ............................. GCGAGGTCAATAAAAAAATGGTGTGGCTTTACC 726 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 787 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 848 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 909 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 970 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1031 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1092 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1153 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1214 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //