Array 1 206941-207361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWB010000001.1 Listeria booriae strain FSL L7-0859 NODE_1_length_758120_cov_16.198022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 206941 30 100.0 34 .............................. TCATCATTGAAGATGGCTATGTACAAGGCGCACA 207005 30 100.0 36 .............................. TAAGGAGCGGACTGTATTCCTCCCAGAATTTCCGTA 207071 30 100.0 33 .............................. ACCTTCTGCACATTCTCCCCAGCTTTTTCGATT 207134 30 96.7 36 T............................. TTTTTATATTTATCCGTTAATGACTTCTCGGCAGAT 207200 30 100.0 36 .............................. ACGGATAGCAGCAAGAAGATTGTAGGCTACTTGCTT 207266 30 96.7 37 .................G............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCAATT 207333 29 83.3 0 ..C.................-...C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 96.7 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : TGTGTGGCGAAATGGCCGGCGATCAAACGGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCGTTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTAAGTGGTGTTTGGAAAGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGAAATGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTAATCGGGTACCT # Right flank : CTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATTTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 401233-401856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWB010000002.1 Listeria booriae strain FSL L7-0859 NODE_2_length_708932_cov_18.970713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 401233 30 100.0 36 .............................. AGAAGACCTTCACGTTGTTCTTTTGATAATGTTTTC 401299 30 100.0 37 .............................. CGAAATTAATGCGTATCTTGAACAAAATGGGAGCTTA 401366 30 96.7 37 ........................A..... AATTTACTCACCTCCTTCCAAATAAAAAAAGCGCTAA 401433 30 100.0 36 .............................. ACGTGTCCATGTTCATTAAGTTCTGCATTAATCGGT 401499 30 100.0 35 .............................. ATCGTTATGGCTCAAGTGAATAGGGTCAAAAAGAC 401564 30 100.0 36 .............................. CCCTCATCGGTATCAATAGCGATACGGTTCTCAGTA 401630 30 100.0 36 .............................. GCGGAAGAGGCAAAACTTAGTGTTATGCGCCTTGCG 401696 30 100.0 35 .............................. ATTGCCGATCTAAATTCTGATCGGTGGAACTTACC 401761 30 93.3 36 ..........................G.G. AAGGACAAAGGCCAAACGGTAAACTTTACAAACTCG 401827 30 80.0 0 .......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAATGAGATTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGGAATTTTGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCGAAGCAATGTTCGTAGCCAATGTCCTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAACGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 68809-69366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWB010000008.1 Listeria booriae strain FSL L7-0859 NODE_8_length_115244_cov_15.039959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68809 30 96.7 35 ....................A......... CGTTGTATCCATGCTAATAACTCATAAATATCATT 68874 30 100.0 37 .............................. TCGGTAGCTTGACTCATGCTAAGCTTACCATTTTTGC 68941 30 100.0 34 .............................. AATTTTAGCTATGATAAAACGGTTATTCGAAGTA 69005 30 100.0 36 .............................. TTTGCTAAATTTGCAGATAGCACACCCGCTGTAGAG 69071 30 100.0 36 .............................. CGCGTTATATGGCGCAACAAGTTGGTCTGGAAAAGT 69137 30 100.0 36 .............................. CTGATTCCCATTTCTGAAATTCTATCGCCTGCACGC 69203 30 100.0 36 .............................. ACGGGATGGAGAAACAAAAAATTAGCTTCCGGCTGG 69269 30 100.0 38 .............................. AAACTTGGAATGGGATTGTAGCGATTGCGACAGGTGTT 69337 30 80.0 0 .................C.A...CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.4 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAACGAGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGATACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGGCGACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATTCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATGCCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAGCCACTCGATATCCATCCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 72614-72967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWB010000008.1 Listeria booriae strain FSL L7-0859 NODE_8_length_115244_cov_15.039959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 72614 30 100.0 35 .............................. AACAAAAGCAACTTAATTTAATTCAGCACAGCTCA 72679 30 96.7 36 ...........G.................. ATCGTTGCTCAAATGAATTCAGCATCAAAAACATCA 72745 30 100.0 37 .............................. TTGTACATTCTGTGCCGCCAGTTCGAACCATCGCATA 72812 30 96.7 36 ..T........................... GAGTCTACACTTGTTAGAACTGGAGTATTGAAACCG 72878 30 93.3 31 ..T.....T..................... TAGTGCTATATGAGACAAGACTATCATATTT 72939 29 73.3 0 ..T.............-.A.G...CC..CA | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 93.3 35 GTGTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAACCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTCGAGTACGAGAAGAAAACCATTCCTGCAAATAGCGCGATGATTGTGCAAGGCGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGGGTTTAAGTCGGTTTTCGGAGCTTGGATTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGAGAGGGTACCT # Right flank : AAATAAGACATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCTATGTTGAACATTTTTAGTATGCAGTTAACAACAATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCTATCTGTACCAAAATTATATGGTGTGATCGAAGTGATGGAACCAGATGTCGTCACTTCTTGTTTTTCAACGATGACTTTTTTCGTACCTAGTACATTGCCGGCTGCGTCATAAGCAATTAGTGTTACGTCATCTGTGTCTTTTAAAATAACCGTTTTCGCGTAGT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //