Array 1 40276-41421 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000019.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 40276 37 100.0 36 ..................................... TAATAAGACCTCAAACACCGCGACTATTTATATAGG 40349 37 100.0 34 ..................................... ATCAATACAGCTTGCTCTCTAGTTGACCCGGTTT 40420 37 100.0 34 ..................................... ATATTCATGCTTTCCTTTGATGTGATGAGCATGA 40491 37 100.0 38 ..................................... AATTACTAACAAATGAATGATTGAAAAAATCAACACAG 40566 37 100.0 39 ..................................... GAGGCATTGATACTCAGTCAGATTTTCCCCTTCGAGAAC 40642 37 100.0 42 ..................................... CGGTAAGCTGCTGAATTGTATGTAAGTCGTACCCTTGCTCGT 40721 37 100.0 34 ..................................... TGTTGCTGGCGTTCCTCCTCCGTTATCACCACCA 40792 37 100.0 36 ..................................... TTGATGTTTGTAAATTGTTTACAAGCGTGTAGGATG 40865 37 100.0 34 ..................................... AAAGACTGCAACCGATCGAGTTTTTCCTTTCTCA 40936 37 100.0 35 ..................................... CAGTTGTTCCTTTATCTAAAAACAATTCCTCCGTG 41008 37 100.0 36 ..................................... GAATGCCCCAATATAATTGCATTCCTCCGCCGTATA 41081 37 100.0 39 ..................................... CTAGTCCCCGGTTGGGCAAGTCGTAATCAATAGTGCCAT 41157 37 100.0 37 ..................................... TCTTTGTTCGTGAAAGCATCTACTAATCCTACCAAAG 41231 37 100.0 38 ..................................... CTTTTTGGGGAGTTGATAGTACCGGAAGGGAAGGCAGA 41306 37 100.0 42 ..................................... GCAGCTTGTTGGGGAGGCTGCGACCGAACGGAGTTCACACAA 41385 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 100.0 37 GTGAAAATCGACCTTAATCCCTTTTAGGGATTGAAAC # Left flank : GTTTGGATTGTTACTGAAAGTACACCAGCTTTGGCGCGTGGTGGAAGCGGAGATGTGTTAACTGGGTTAATGGGTGGATTATTGGCGCAAGGAGTTGCTGCTAATATAAATTCACTTGCAGAAAGGGTAGTAACGGCGGCTTGGTGGCACGCTCAAGCTGGTATTTTAGCTGCACAAGAAAGAACAGAATTAGGTGTGGATGCGTTTACTTTGACACAGTTTTTAAGTAAAGTTTTGTAATTTTTAACTTTAATGGTTATTAGGGATGGAAAGAATGCGCGAATGGGTGGTTGTAATTTTATGATTTTTTACTAAATTTCTAAAAGTGTTCGTGTGATTAGGTTTGAGGCGATTGGTCTGTCAAACCATCCGCGCATCATACACAGTAAATAATTCATGGATTTCTTGCCTTTATTTTGGATGTTGATTATAATTCAGGAGTGCAAATCGCGCATTGAACCTTTAAAACTGAATAGTTATGAGTATTTCAAGGTACGGCA # Right flank : CGAATTATCTACCATGCTGGCTCATGTGGTCGGTGGTACAGTATTTTCAAATAATTGGTCTTTGTAACTTATCGTAAACCTTGATATTTTTCCAAAAAAAGGCTTTAAATTAATTGTTAGATGGTGCAAAATCTTCCTAAAAAGAGCCAGCGCAATAAGTCGGTTTCGGTTATTCCAAGATTGCTCACTTGCTGTGGAAAAGTGCAACAGGTGAGAGCATATTAATTAAGGAGACGCGAACTATGATTGATGCCAACGAAGTGCTCAAAGCAATGTGCCAAAAGTATCAGGCAGCCGTTAGTGCCAATGATTCAGTAGCATATAAAAAGCTATTCGCCGCAGATGCGATTCGGATTCCACCAGGGTCAGAACCAGAGCATGGCCCGGACGAAATTTCTCAGAACGAACAGAAGGATTATAATGTTGCAAAATGGAGTATCCAATCTACACCAATTGATGCTCTATTAATTGATGAGCAATGGATGTACGGAATCGCGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAATCGACCTTAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 3378-8188 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000020.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================================================================================================================== ================== 3378 23 100.0 50 ....................... ACATCCCCGATCGCCCACCCAACAAAGAGCAAACCACTTTCCATTAACCA 3451 23 100.0 49 ....................... CAGATTACGCAGCAGGTTTGCGATTAGAGCCTGGCCTTTCCATTAACCA 3523 23 100.0 52 ....................... CCATCAGCTGAATTAATCGATGAATTAATTAATGCTGTCTTTCCATTAACCA 3598 23 100.0 51 ....................... TAATTTTGAGTTGGATGTAGCAACTCATAGCCCTACACTTTCCATTAACCA 3672 23 100.0 53 ....................... GGTTCTAATGTTAGATATTCGCGCCAAATTTCCTTAGCTCTTTCCATTAACCA 3748 23 100.0 51 ....................... TATTTTGTCTTCTTGAGAAAATTCATTCCAATTGCTTCTTTCCATTAACCA 3822 23 100.0 54 ....................... ATAATAATGGTCAAAATCTTGTTATTACTAAATTAGATTGCTTTCCATTAACCA 3899 23 100.0 52 ....................... ATAAAGCAAGCGAAATTATAAATCTTGCCAGATTCAATCTTTCCATTAACCA 3974 23 100.0 54 ....................... CGATCGCGTACAATTCGCATCCATCATCAGAAAAAAATAACTTTCCATTAACCA 4051 23 100.0 50 ....................... ATCTCCAAATGTTTCTTTTACAACTCGTTTCACATCCTTTCCATTAACCA 4124 23 100.0 52 ....................... CTAAATTTCTTCATAGATCTAAAAAATTTAGCAGACAACTTTCCATTAACCA 4199 23 100.0 50 ....................... AGAAAATAAAAATCAAAAATCATATCAAATACTCCACTTTCCATTAACCA 4272 23 100.0 52 ....................... GTTATCGCCCTTTGGCTGGATGTAAGGGCGATTATGCACTTTCCATTAACCA 4347 23 100.0 52 ....................... ACGGTATAAGAATCTTCCACCATCAAGTCTGTCCCTGACTTTCCATTAACCA 4422 23 100.0 51 ....................... TAAAGAGCATCAAAAACCGATCTAGCAATCTTGCGAACTTTCCATTAACCA 4496 23 100.0 51 ....................... TTACCGCAATGATGGAACGATTCTTAATTTAAAAATCCTTTCCATTAACCA 4570 23 100.0 51 ....................... TTCACTTTCAGCATAACAGGTAACAGGAGATGCTAAACTTTCCATTAACCA 4644 23 100.0 54 ....................... CTAAAGTTCGATAGGGATATCGACCGATCGGGATATTTAACTTTCCATTAACCA 4721 23 100.0 47 ....................... AATATCCAAGTTCTTTGCTTAGTAGCAATTAGGCTTTCCATTAACCA 4791 23 100.0 53 ....................... ATTTCATTTGGATCGGACAATAACAATGCAGAGAAGTTGCTTTCCATTAACCA 4867 23 100.0 53 ....................... AATTCAAAAGTCGATCGCTCCCTCACAAAACCCAAAGGACTTTCCATTAACCA 4943 23 100.0 50 ....................... TCCAAAATATTTTGGAGGAAACCATGCAATATTTTGCTTTCCATTAACCA 5016 23 100.0 56 ....................... ATTAATCAACCACCATTTATTCTACTATGCCAAGCTTATCGGCTTTCCATTAACCA 5095 23 100.0 54 ....................... CGTCTGGATTACCAGGAACAGCAGTTTGTCCCCCCTTTGTCTTTCCATTAACCA 5172 23 100.0 50 ....................... CTCTAATTGACCTTGACGATTTTCAAAGAACAGCACCTTTCCATTAACCA 5245 23 100.0 52 ....................... ATACCATCGTCTGCAATAGCCAGATGACGCAATTCTCCCTTTCCATTAACCA 5320 23 100.0 52 ....................... GTAATGTTTTCTTCTGATGATGACTGGAAGAATATATACTTTCCATTAACCA 5395 23 100.0 48 ....................... ATAATCTACTTGAACCTGCTGAAGATGGTTCACTCTTTCCATTAACCA 5466 23 100.0 51 ....................... ATCAGTACGTTAAGACCTTTAACCAACCTGCTATAACCTTTCCATTAACCA 5540 23 100.0 52 ....................... TCAACTAGAGATGTATTGCTTATATTGATATTCATGTTCTTTCCATTAACCA 5615 23 100.0 51 ....................... ACTACATCACCATCATGTAGTTGTTTACCATCTACTTCTTTCCATTAACCA 5689 23 100.0 50 ....................... GATTCATTTAATTGTTGTACTTGATTTTTCAACAAACTTTCCATTAACCA 5762 23 100.0 54 ....................... AATCCTTTAATACAGATGATAAAAATGGTAATCCTCAGATCTTTCCATTAACCA 5839 23 100.0 51 ....................... CTGGCTCAATACTTTCTCTACAGGCGTTGAATTAATGCTTTCCATTAACCA 5913 23 100.0 50 ....................... ACTACCTTATCCCGATGCACCAACTGAGTAAGTTCCCTTTCCATTAACCA 5986 23 100.0 54 ....................... ATTACCAAAACCAGTAGAACCGGATGTTTGATAAATATGGCTTTCCATTAACCA 6063 23 100.0 49 ....................... ACGTTCTTGTACCCAGCATAGAGGCGAGAATTTGGCTTTCCATTAACCA 6135 23 100.0 51 ....................... ATTCCTTGCGATCGCGGACAGCCGAGGGTTGTGGGAGCTTTCCATTAACCA 6209 23 100.0 51 ....................... CACGCTTACCCCTCTCTCTAGTTTCCTTCCACGACGACTTTCCATTAACCA 6283 23 100.0 51 ....................... ATTGTTCTTTTTCATTTGCATTCCTAGAACCACTCAACTTTCCATTAACCA 6357 23 100.0 55 ....................... AACAAACTGATGATGCTATCCCATAAACTAGCAGCAATAAGCTTTCCATTAACCA 6435 23 100.0 54 ....................... ATAACATTACACCATTTACTGTTTGTCTTATTAAGTACAGCTTTCCATTAACCA 6512 23 100.0 52 ....................... ACGACTCAAAAATAATGGTGATTGGTGAAGCTCCAGGCCTTTCCATTAACCA 6587 23 100.0 49 ....................... AGTAGCCATGTGCTGTATAGCCTCATCAATATTAGCTTTCCATTAACCA 6659 23 100.0 47 ....................... CTACAGCAATAACTTTAAAGGATATTGCTGTATCTTTCCATTAACCA 6729 23 100.0 54 ....................... ATTCACATATAACTATGAATGTTTTTTTATATGCCATAGGCTTTCCATTAACCA 6806 23 100.0 52 ....................... TATTTCACACTGTCCAAGAAAGGTAGAGGACAAGATACCTTTCCATTAACCA 6881 23 100.0 50 ....................... AAACAAGCCAACAAATCATGGCAGAAGCCATGATCGCTTTCCATTAACCA 6954 23 100.0 50 ....................... TACCCCTGGTTCTGACTTGGCTTTGGTTAGATGGAACTTTCCATTAACCA 7027 23 100.0 54 ....................... TTGCAGGTAGCTTAATCCGTGAAATTAGAATCAATCGATTCTTTCCATTAACCA 7104 23 100.0 52 ....................... AAGCCTATCTCAATTAATTCCATTAGTCTTCCTCCAAACTTTCCATTAACCA 7179 23 100.0 51 ....................... GGAGGAATTTACCGGGCCTATTACCTACATCGATAAACTTTCCATTAACCA 7253 23 100.0 51 ....................... GAAACAAAAATCTACCGCTCAAACATGATGAAAGGTGCTTTCCATTAACCA 7327 23 100.0 50 ....................... CTAACAGATATTCCTAATGCAGCACCAAGCGTTCTCCTTTCCATTAACCA 7400 23 100.0 51 ....................... TAAAAACAATGGACAAAATATTAATTGATAATTACTACTTTCCATTAACCA 7474 23 100.0 48 ....................... GGTCTAAGTCAGATGTAGTGTTCCAACTCAAGCTCTTTCCATTAACCA 7545 23 100.0 52 ....................... ATGCTTCTAAGGCTTTTAATAATCTAACTACAACCGCCCTTTCCATTAACCA 7620 23 100.0 50 ....................... ATGACGAGACGATCGAGCGTGCGATCGCGGCGATGGCTTTCCATTAACCA 7693 23 100.0 50 ....................... CTAGAAATAACATTGCCGTTAGCATCAATCGTCTGACTTTCCATTAACCA 7766 23 100.0 48 ....................... CAAGCAAAAGCTAAACGTTGAGGTTGACGCAGGACTTTCCATTAACCA 7837 23 100.0 50 ....................... GATAATTTTAATCCTCATAGCAACCAAAGATTTAATCTTTCCATTAACCA 7910 23 100.0 53 ....................... ACTCAAACCGCTACTACATCAGAGTTGTGGCGGTTTTTACTTTCCATTAACCA 7986 23 100.0 158 ....................... CCCAATTGGGTAAGGCGGTTTAACGAGGAATTGACGGCAGAGATTACAAGAAGCGATCGCAGCAAGAAAGCTTTTGCAGTTGTTCTTTTTCCGATGTATTGACGGTTGGGATTGCCGAATACAATCGCACTAATCTTTTCCTAACTTTCGGTTGAAAG 8167 22 78.3 0 .......AT....A..-.....T | ========== ====== ====== ====== ======================= ============================================================================================================================================================== ================== 64 23 99.7 53 AATCCCCGCAAGGGGACTGAAAC # Left flank : GATTCAATATGGTGCTTATACTTTTTTCATGGGCTCATGCCAATCTGAGATAATGGGGCAAATCCAGGTTTGGGTTTTTGATTGATGAAAGCAAATATTTGATTTCAGATTTGTCGGATGGCGCAGTATCTAAGATTCATTTAAAAGCGATCGCCGATTCAATCACCCCATTTTCTAGTTAGCAAAACACAAAGGTAAAGAAAAACTAGTTTTTGGCACTAGTAATTTCGTCACGTATCATAAACACAAAGCATTGACAAGAGATTGGCATTGATTTATCATGTTTTTCGTGATTCAAAGCGGGAGCGAAATCTTGGGGAGATTCACGAAAAAGGCTAGAACCTTGATAATTAAATACTTTCAGAATTCGGAATTTTCAGATTATTGCAAATTGCTTGCAATAATGAGGGCTGAAATGGAGCTAAAAATGAAGTTCACGAAAATTGACTTCATAATGCCCTGGCTGTCTTTGTTTCAGGAGGCAGTCTTTCCATTAACCA # Right flank : TCAAAGTAAAATACAAACAGCAAGAATTCGGCATCCTTCTGCTCAATCACAATGCTTCAACCTGCCAAAAGTCGCCGCCAAAAAAAAGAAATATCCGAACTGAGTTGGTCAAAAGATACAGAACTGCTGGGACTAGTTTTTGAATTACAACCACGCGTCAATGCTTCTTTATATCCGCAATATACGATCGGACTTCATGCTTGGTTACTTGACCAAGTGCGTTCATTCGATTCAGAATTATCCGCATATCTTCACGATGGACAATCGGAAAAACCCTTTACAATTTCTGGGTTAGAAGGCACATTGCAACCTGTAGGTAAGGAATTTCTTGTCCAAGCATCACAAACCTATCGTTGGTATGTGACAGCTTTATCAGCAAAAGTGGTGCAATGGTTGACGCAATGGGTAAAAGCATTACCAGAAGAAGTGGCGCTGCGGAATGTATCTTTGGTCATTCAATCATGTCAAATCGCTCTGCCAGCAACTACTTATAAACAGTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 31342-33439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000020.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 31342 23 100.0 55 ....................... ATTCTTTAACATGAGCTTGATACATTACAGACTGTCCTTTGCTTTCAAATCATTA 31420 23 100.0 48 ....................... GAACATTGGCAGAGATTTCAAATTGCGATACGACCTTTCAAATCATTA 31491 23 100.0 52 ....................... AGGACTTACAGATGATGTTGGCGTTTACTGTGGCCCTACTTTCAAATCATTA 31566 23 100.0 49 ....................... AATGCCTCTTTTGTTGTTGTTCCGTCTTCCCAGAACTTTCAAATCATTA 31638 23 100.0 53 ....................... TTTATAGAGGAAATCAAAATTTAACTATTACTAAATTAGCTTTCAAATCATTA 31714 23 100.0 51 ....................... CAATATCCATATAAAAACACGCCCCAAAATTACTTTGCTTTCAAATCATTA 31788 23 100.0 48 ....................... TAAGTTACAGCCGAGTTTCTGCTCAAAGCCCTAGCTTTCAAATCATTA 31859 23 100.0 48 ....................... AGCCAATCCATCGTAGGAAAAATAGGTAACAGGACTTTCAAATCATTA 31930 23 100.0 51 ....................... TCTAAAATATTTCCCGCAGCAAATTCAATCTTGGTGACTTTCAAATCATTA 32004 23 100.0 51 ....................... TCTTAATATTTGTTAAAAGGTGACGTTTGAGGCATGACTTTCAAATCATTA 32078 23 100.0 54 ....................... ACCATCTACGCTGACTTTGTACTCCGTGTCCACAACTGGACTTTCAAATCATTA 32155 23 100.0 50 ....................... GAACTAAGGCAACCATGATTAATATGCTGAATAAGGCTTTCAAATCATTA 32228 23 100.0 46 ....................... TTAGTTTCATAAGTCAATTCATGTTTTGTTGTCTTTCAAATCATTA 32297 23 100.0 53 ....................... CTATTATTATCAAACCAATAACGTTCATTTGCAATGGTACTTTCAAATCATTA 32373 23 100.0 51 ....................... ATACATCATCATTGAATCTTAAAACATCATCTCTTTCCTTTCAAATCATTA 32447 23 100.0 52 ....................... GATGCAATATGAACCTTATAAAGTTTATCTGGTTTAGCCTTTCAAATCATTA 32522 23 100.0 49 ....................... CTTTAAGCAGCTACTTTAGTGAAGGTGACGATCACCTTTCAAATCATTA 32594 23 100.0 51 ....................... TTTAATGGACTCGTTGTACAAATTCAAACTCATCCTTCTTTCAAATCATTA 32668 23 100.0 53 ....................... TTTTACACAATTCATCTACCTTCAATATCAGGTAAAACACTTTCAAATCATTA 32744 23 100.0 52 ....................... GATAATTTTAGGGTCACAGCAGAAAATGAACCAGTCTACTTTCAAATCATTA 32819 23 100.0 54 ....................... ATTACAGCAATCTTTGTCCCCGCTTAAAAACAATCTTAAACTTTCAAATCATTA 32896 23 100.0 51 ....................... TTGCTAAAGTCCCAGACGCAATGCAAATGTTGGTGAACTTTCAAATCATTA 32970 23 100.0 51 ....................... ATGAACGCTGAGAAAGAGGTAAGAGCTTGGGAATCTGCTTTCAAATCATTA 33044 23 100.0 52 ....................... AGCAGCGTGAAGCTCAACAGGTAATGCTTGCTTTGGATCTTTCAAATCATTA 33119 23 100.0 52 ....................... ACTGTGTACATCTGGATGATAAACAGTAGGACTATTATCTTTCAAATCATTA 33194 23 100.0 54 ....................... ATAACGTTATTAGTTCTAATAAATATTTTGTCTAGAGGAACTTTCAAATCATTA 33271 23 100.0 51 ....................... GAGCCAAGGGAAGGAATTACAAGCCGACCAAAGACGACTTTCAAATCATTA 33345 23 100.0 49 ....................... TTGTTACAGATATATTACTTGATAATTTAAATACACTTTTAAACCATCA 33417 23 69.6 0 ......TA.........ACTCT. | ========== ====== ====== ====== ======================= ======================================================= ================== 29 23 99.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : GAATGTTTTTTGACCACGATCCAATTTGTGAAGCTGCAGCAGAAAATTGAAAAGTTGATTAAGCCAAAAGAAGATTCAGTACGCATTTATGTTTTGGATGCCGGATCTCTCAAGCGCACGATTACTTACGGTTCTGAGGAACCAAGGCAGGAAATTGCGATCGTTCTTTAACTAATCTAAAAGTCTAGCAATTTATTCACCTAAAGCCTGGTTTCTCTTTTGAAGCCAGGTTACATAACATAAACGGAAAACATTGACAAGAGAATGCTGCTGATTTATGATTATTTTCGTGAATCGAAGCGGAAGCAAAAACCTGGGGGGATTCACGAAAAAGCTTATAACCTTGACAATTCAATAATTTCAGTTTCAGTAACCGCTCAGTTATTGCTACTAAGTGGCAATAAGCTCGGCTAAAATGAGGTCAAAAATGAGATTTACGAATAACCATTTCACAAGCCTCGGTTGGTCAGGGTTTTGGGCGGCAGTCTTTCAAATCATTA # Right flank : CGTAACTAATGAAATCAAGACAACGGAACTAAAACTGAGATATTGGAGATGAGCGATCGGTTATATCAGATATTCCAGTTTAATCGCTCACATTTGTTTTCTGCCAACGTCTTCAAATTTATTCTGTTCAAGTTCAGGACATGGAAAAAATAACTGAATTAACTAAGCCGCTAATTGTGGGTCAGAATTATCGAGTTCCTTGTGTTAAAAGCTCTGCTGTTAATTGGACTGATAGAACAATTCCTGTTTTGGGTGATTTCCATTGGGACACTGAAATTATCGGGTTTCCAGATGAACACATACACATAGATTTTCGGTTTATCAGTAGAGCAGAATTCAGACGATTGTATCATCTTTCTGGTATATCACCTTTTGCTCAAGTAATTAGCAAAGAATTTGTGGAATTTGAAACTTGGGAAATCAGAAGATGCAACCGCCCAATGCCCAAATTTCCTGAACAAACTCCCGAACTTCATATAACTTAGTTTCCCACCCTGGAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3348-2356 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000030.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3347 37 100.0 32 ..................................... TAAATCTTCTCCTGCATCAGGATTAGAAAAAT 3278 37 100.0 36 ..................................... GGTAGCAAACAAATGTAAGGTTCCGCACCTTGTTCT 3205 37 100.0 34 ..................................... TTTGTTTCCCCTTCTGATGGTAAATTATGCGCTG 3134 37 100.0 39 ..................................... AGGATTTTAAAAATTTCGGTATCACTACCAAAAGAGTTG 3058 37 100.0 36 ..................................... AAAGCTAAGTGGGCTAGCTTTAACTCAATTGTGCGG 2985 37 100.0 40 ..................................... AATTCTTGTAAAAGAAGGAATAGAGATGCCCGGAAGTAAA 2908 37 100.0 38 ..................................... TTATCAAGATATATTTCATTATTAATAATTTTCTCAAA 2833 37 100.0 35 ..................................... TCGACTGGTTCCCCACTTTTTAGCGTTTTCCTCTC 2761 37 100.0 35 ..................................... GTCTGCGGCCATACTTGGTCATTGAAAAAATCTAA 2689 37 100.0 35 ..................................... GGAAAGGAGCGAGCAGCAAAAAGGGTTTTAGTTCA 2617 37 100.0 40 ..................................... AACTCATCTTTTGGTTGACTAAGACTCTTGAACTTTTCAT 2540 37 100.0 40 ..................................... GGCTGGCCGTAGCAGCCCGGATTGAGAATCAGCCACAAAT 2463 37 100.0 34 ..................................... ATTTTATCGAATGCCTGTAAATAGTCCAGGTGAA 2392 37 91.9 0 ..........T.............T.T.......... | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.4 37 GTTTAAACTTCAATTAATCCCTATCAGGGATTGAAAC # Left flank : TGCTACTGGTCGGTAAGCGTCAAATATCAAAATTCGCCAGTTAGGATGAGTTAACTGTAGTTGGTTTTGGGCTTGGATAAGTCTTTCCAAAACGCTTTCCCGGAGATAATAAGGTGAGAGTTTGCCATAGGGGGCGCGGAGTTTTTCGTAAGCGTGGGGTGTTTGGGCAGCGAAGTGTTCTAGCGGTATGGGTGTTAGGGGTTCGCCACATTCTAGAATCGGGATTTTTTGGTAGGGTTTCATTGTCAGATTGCGCGAATGGGTGGGTGTTTTTGGCGAGTCGTGTTTGTTTGTGCCTCAAATGGTTAATTTACAAGAGTTTGGGGTTTTTGGGGGTAATTTTTTATCCGCGCAAAGTCTGTAATGCTTTTGGGGTGAAGGTTTTGGCTGTTATGCCTGTGAGTGGTATTTACAGGTTATGGGCTGAAATGATAGATTTATTCTGTTCCGCGCAACTGTACCTCGAAAATTAAATATATTCAGGGTTTCGGAGTACCGCA # Right flank : TGTCTATTGACTAGAGGTTAAGCTATAGCATATCCAGTATATTGTCGTACATTAGGTGCATGAAAAGCCAAAACAATTTTATCTTTTGGAATACCTGCGGCAACAAGTTCATCAGTAATTCCGTCTTCAATTCCATCTCTTTGAATCCAAATTTTATCGTTAATGATTTCGACGTGAACAACACAACCATGCACTCTACGTTTGCCGTCCCAACCTACTACCATGATCATAAAGTTATTACGAGCGCGATCGATAATTAATTTACTTTCAATTTGTCCATGACTGTAAGGAATGCGATGATGGGCTTCTAGAATACGTTCAATAATATTGCGATATTCTTCTACTCTATCCATTGGACAATCTCCTCTGTTTCTGGATCGAATATAACTAACTTAAGCTGGTTATTTTCTACTACCATTTTGGCAATTTCCTCTTGAAAAAAATCGAGATAAACTGATTCTGTAATGGCTAAATACAGGATACGTTCGGGTTGCGATCGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCAATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 30988-32902 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000026.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 30988 36 100.0 42 .................................... TATCATGTTTACCTGCTATTTGTAGACCATTAGTAATATTGG 31066 36 100.0 41 .................................... ACCACCTTTATTAGCAAATACCATTCTGGTGGTTTCTCCTT 31143 36 100.0 42 .................................... ACAAACTTTGGTGTATTCGATCATGACGATCTAGCTGATGCT 31221 36 100.0 37 .................................... GCTGATTATGGAATAGGACAATAATATACTTTTCATG 31294 36 100.0 38 .................................... TTTAAATCAAAAATTACGCCTTTAAAGTCAAACTTACA 31368 36 100.0 36 .................................... CAGTATTTAATGGGCGGATTGCTAACGCCAGCCAAG 31440 36 100.0 37 .................................... GTTTGGTTTAAACACTGTAAGATCTTGTTTCTCTAAA 31513 36 100.0 37 .................................... TTTTGAAAAACAGCGAAATGCCATAGCCATCGGATTG 31586 36 100.0 42 .................................... ACCTCTTTTCTGTAGTTTGATGGGCTGTCTTTTACTATCGTT 31664 36 100.0 38 .................................... GCCATCATACGCCACTCTAAGCAATCATCAGACTCAAG 31738 36 97.2 37 ..........................A......... AAATCTGCTGAACTTTCAACGCCAAACATTTCTTTGA 31811 36 100.0 38 .................................... TTTCAATGTGTTCCATTACTTGTGATACCTCATTGGAT 31885 36 100.0 39 .................................... AACCGTAATTTCCGTGCCGCAACGAGCAAGGGCGATCGC 31960 36 100.0 42 .................................... GATTAAATGTATTACATTCAAACACAGCTCCTTTGTGGACTC 32038 36 100.0 38 .................................... GTTCTAAAAGATTTAATTCATGGTAATTCTCTAAGTTG 32112 36 100.0 39 .................................... AAGTAGTTGATGGAGATTTTCATTTTCAAATGCAACTTT 32187 36 100.0 35 .................................... AGTTGATCCTGAGTCTTGGAAGTGGCAAGATTTGA 32258 36 100.0 44 .................................... CACCCCTAATTAATAGAGCTTTATTGAACACTATTCCCAGTGTT 32338 36 100.0 37 .................................... ATTTGATTGGAATGCCGTTTGAATATTCCCAAGTTTC 32411 36 100.0 36 .................................... TTAATCCCCACCCCCAATAGGTGATTCCCCATCGGG 32483 36 100.0 38 .................................... TATCTGAGTAGAGGTTCCCTCTGATAAAGGCAATTATC 32557 36 100.0 43 .................................... AGGTTTGGACTTCCTGGTTTAAGTTTAATCCTACTAACATCTG 32636 36 100.0 47 .................................... TCAAAGTGCAAGGAAAATCCCTCGATTCCTTGACCTGTAAATTTATT 32719 36 100.0 38 .................................... AACTTTGTAGTAATGGCGACGGTATTTAACCAATCCTA 32793 36 100.0 38 .................................... TTCTCTTAATAGCTTTAATGCTTCACTTAGTTCTATGC 32867 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== =============================================== ================== 26 36 99.8 39 CTCCCTATTTGTTAGGGAAATTAGTTGAATGGAAAC # Left flank : GTTTGGGTTATCGTCCTTATCAAATCCGTTAGTTTATGTTGTTTTATGTGGTGGTTTATGATGTTCCTTGCGATAAGCGACGGAAGAAGGTGGCTGATTTGTTGGAAGGTTATGGGAGGCGGGTGCAGTTGAGTGTTTTTGAATGTGTGTTGAATGCTAGTCAATATGATGAGTTACGAAAACGTTTGCAAAAGCGGGTGAAGTTGGCGGAGGATAGCGTGCGGTTTTATCCTTTGTCTGGTCATACTTTATCACAGGTGGAAACTTGGGGTGTGGGGCCAGCAATTACGGTGTTTCCTCAGTCGGTGATTATTTGATGGTGGCGAGGGTGAGGGAAAATGGCGGAAATGACGCTGTTACGTTGTGAGCCTCGGTGCTTTGCTGGGTAAGGATTTGGGCGTTTTTTTCTTGGTCTGTTTGTGGCTGGAGGGGTGTTATAATTGGGGAGCCTCGCAAATGACCTCTGAATCGCTTGTCTGTTCTGGGTTTTGGCAGTGGCT # Right flank : GATCATTATCTTCAACATACCGAAAGCCGCAGCTAGAACACCAATTAAGTAATCCCAGAAACCGGGTTTCTTTGGCTTGGGATAACAAAATATCGACTGCGCTAGGGAAAGAAACCCAGTTTCTCATCCCCGACTACAATACTGAATCGGCGTTCTAGCCCTCCCTACTACCAAAAAACCGATCGCCCACCCCACACACAACAAACTCAAATTGTCAAGCAAAAAAAAATAATAATCTCAACAACAACCCAAAGCCAGAAATCCTTAGTAAAACTCAACTTCAGACTTTCTTATCAAAAAAATCCCAATATTGGTAATTCCTAGCACAACAGAGGGAATCCTAGATAAAGTGCAGTAAAGATAGACACATCAGGGGACAAAAACCGTGTCACACCCGTATTGGCAAGCAAAAATTTGGGGGTTACTCCACGACCCAGTATTCAAAGCCTTACATGATAATAGTGGACGAGGCTTAGAAGGAGCTTGGGAAACGCTCAAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTATTTGTTAGGGAAATTAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 45859-44921 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000026.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 45858 36 100.0 41 .................................... GATCTGTTGGTTAATCTTCCGCCGATTTCTCCACCACCGAT 45781 36 100.0 37 .................................... CAACACCTACAACCCTGATGGTGTTGCTGACAGTGGT 45708 36 100.0 42 .................................... GTTCCTACTTTTAGCGATGGGAACTATCGGTGTATTGCATCG 45630 36 100.0 36 .................................... TAGCCAAAAGCTTGTTAATTTCCTTGTCTATATCTT 45558 36 100.0 43 .................................... TTGACCTTAATAAACTACTAGAACCTAAGAAGCAATATGTGCA 45479 36 100.0 42 .................................... AGGCCATCGTTTATCTTGTATTACCCTAACTTGACCATTCCA 45401 36 100.0 39 .................................... AATCTTCGTCTGAGTGGAATTCGTAATCTCTAATCGGTT 45326 36 100.0 40 .................................... TTCAATTTGACTATTGATAGAATCAATTAATTGACGAACA 45250 36 100.0 38 .................................... GCGAATAGCTAAACCATAATCCACCAACTTAAACAATG 45176 36 100.0 37 .................................... TAGTATCCCTTTTCTTATTACTTCTTCTCTTTTCTCT 45103 36 100.0 37 .................................... TAGTATCCCTTTTCTTATTACTTCTTCTCTTTTCTCT 45030 36 100.0 38 .................................... TGTATTGATTCAAGGCGATTTACAAAATACCAGGTCTT 44956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 13 36 100.0 39 ATCGCTTCCTTTTTAGGAAGTGGAATTAATGGAAAC # Left flank : AAGGTTGCAAGAATTGGATAATGCGATCGGCTACAGTAGCATTAATAAAGCTGGCAACAGTAACTAACAAAGTATTAGTTAAGACAGCCGCTAATCCTAAAGGCGCAATTAGTAAGATAATTAAAGTAATTGCCCCATTAATTCCAGCTATTCCTAAATTACGAACAAAAGCAGCACGTTGAGTAATATACATCTGTGTTTTATGTTTTAGTAAACAACTTATGGTTTTTTCTCCATCTGCACTTAGCCTAAAATGTATTTTCCCTATCTACCACCTTTTTCGTGCGAATGACGAATTTTTATTTACCCCGAACTCAGTGCGACAGGGTAGGCAAACACCCGCAATTGCTCATACTTTCGTCAACCCGGTCGATGTCCTGCCAGCAAAGGCTTTCAGCGTTTTACAACTCCCGTTGAGCTTGGTAAAAAAGCTCAGTTATGCTACCCTGTCGAAAAGGAGGTCTAGACATCTGACTGTGTTTGGTGTCTAATAGGTATGT # Right flank : AAAATGGACAATTCCACAAAGATTCTGGAATTGTCCATTTTCTGTCCAGAATACTCGGTGGAATCAATAAATCCCCTAAACAGAAAAGGTCAAGTGTTCAACACTCGACCTTTCTTAATTTTCCGAATTACTATTGCCACGAACAAATATTACACCAAATCCGAATAAACCTGAGTAATTGCTATGCCAATTTCCTTAATTTTATTAATTAATTCAACAGGTTGCTTCACCTTAACATTACCAGCAAAACCAACAATCCAGCGCAACAAATCCACATCATTTAGCGACCACATTGGTAACTTAACTCGAAATCGATTAGGAAACTGAAAATCTTTAGTTTTCGCTAAACAAAATATTGATTTAGGATAATTTAACTTACTACCTCCCAGTGGAGGAGACATCTTCATTTGACTGCTGGGAAATCGTTTTGTACCTTCACTAATAAAGCGAAATTTATCATCATTAAACCAAAGTTCAACCATCACCTCAACATTAGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCCTTTTTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 60337-59064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000026.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 60336 35 97.1 37 ..................................T TCTCCAACTGGTTGCATAGGAACTGTAACTGGTGTTG 60264 35 100.0 37 ................................... CTTACGTCAACTTCGTTACCGAAACCATCTTTTTGAC 60192 35 100.0 40 ................................... TCTTTCAAGAGTGGATCTGGCCCGCTTGGAACCGACAAAG 60117 35 100.0 39 ................................... ACTTGGATCAAAGCGGGTGCTTAAATCCAAAGTAAACTG 60043 35 100.0 41 ................................... AGTCAGCTCAAATTACCAAGGGGCAATTTGAGATGTTGGGG 59967 35 100.0 36 ................................... ATTTGTTACAATACTATCGTATTGAACATCCAATAC 59896 35 100.0 36 ................................... TTTGAGTGTAGTTTCGCTTGTAAATATCATCTGAAA 59825 35 100.0 40 ................................... TGTTCGGCCAGAGTCATCAGGGAATATTTAAACAAAAACA 59750 35 100.0 34 ................................... CATGTTGACTTGCACAGGCATTCCAACATTGCTA 59681 35 100.0 39 ................................... TTGGGAGTGCCTTCAAGGGTCACTCCAGTAATTGGTGTT 59607 35 100.0 34 ................................... TCTATACTTTCAAATGGAAACTTTGGCAGATCAA 59538 35 100.0 38 ................................... GTTCGGGTATGTCCGGCTGGAACCGATACCAAGTACCG 59465 35 100.0 38 ................................... ATACACCATCTTGGGTGTAACCTTCTTTCCAGTCAACT 59392 35 100.0 38 ................................... CTTAGGAACATGGACTTTAGATTTCCTGCCGTTAACAT 59319 35 100.0 36 ................................... AATGTAAAAACAACGAGAGGTTGGGTTAAGCTTCTA 59248 35 100.0 39 ................................... GCAGTAGATCCGTCACACGCAAACGTTGAATCATTTGGA 59174 35 100.0 41 ................................... TTATCATCGTAAGCCATAACAGACTCCTAGAATAAAATAAC 59098 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ========================================= ================== 18 35 99.7 38 CTTTAGGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GCTCGGTTTCGGCGACGAAATGATGCGATCGCTCATTTACAGGTGTTAAAACAATTAGTTAAAAATGCCTCTTTCGAGATAGTTTTTGACGCTCAAACGGACGGTAATTTGTCGAAAAAATAAGGCTTCTTCGTAAGTCGAATTAATGGAAACACCAAGTTACGTAAACTGTCAAATTTATCTAGCATCTGTTTGAGTGCGAGTTATGGCTCAATGCTGAAAACTGGTGCTGGCGATCGGCCCAAAGCCCTTAATCTCAGCCGTTGACTACACCACCAGCGGCTTTTATTTAATTTCTGTCGTAGGATTTTCGGGGGGGTAAAGTGAAGCCTGAAACCCGCATTCTATCGTTGACCCCCCTGAATCGCTCTCTGGATATGGGTTATAAGTCCGCGATCTGGGTAGTTATTGAGAACTAGTGGCAACTGTTCCGAGTTAAATTTGACCCCCACGAAAATTCGCTGTACAATTAAGTCTGGGCAAGGCTTTTAGAGTCTAGC # Right flank : GTAAAAATGCCACTTTACAAATAAAGTGGCATTAATTTATTGCAATATGATTTAGTCGTTGGCAACATTACCAACAGCTTTTTATGTTCAAAGATTTTCGTTCAATTTAGTGAGTACAGAATCTCTAATCTCTGAATAGATATAATACTGACTATTTTCACCAACGCAAGGCTTTGTAGGCTCATTTAAAAAAGTAGAAACGCAATCAATAAGATTAGCTATTTCAGCGGTTATATCTTCTGGAGCGCAAGCTGCGATCGCTATTTTTTTTCCGTCTTGACAGTCTTTCGATCGCAATTCAACCATTCCATCTTTCGATACACCCGTAGCGCGATGAATTATATCATTTCTAATTTCTATCCAATAGTTTAGTTTCTTTACAGAACTTTTAATAGGTTTCCAAACTTCCAAATCTCTAGCTTGAAACTTAACCAAAGCTTCTACAAAGTGTAGTTTATTATAAATGTATCTTAACCAGTATGGCTCGGTAAAATTTTCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 69064-68061 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000026.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================== ================== 69063 34 100.0 39 .................................. ACGAGACTGACATCGAGATAGAAAATAATCAACTAATTT 68990 34 100.0 47 .................................. ACTCCTTATGCGGTTGGGCAAGAGTGGGGAGGGTGGTTCCCACAACA 68909 34 100.0 43 .................................. ACTATTCATACTTGGATCAAAGCGGGTGCTTAAATCCAAAGTA 68832 34 100.0 40 .................................. ACTTTTCATAATTCTCTTTATCCAGGATAATGGCATCATG 68758 34 100.0 39 .................................. ACATTTCCTAGGTCAGAAAAACCTAAGGTAATAACAACG 68685 34 100.0 36 .................................. AGTTGGAAATTATTAGTTCCAGATCCAAACATGGTT 68615 34 100.0 42 .................................. CGTGGTAATTCTTCATCTGTGTCTTTAGGATAGAAGACTACT 68539 34 100.0 36 .................................. CAAATCGTAAGTGTCGTTAACTGATCTCCATGATCG 68469 34 100.0 42 .................................. CAAGGATTTGCGTTTGGATCAGTTGGACCCGCTGGAACAACT 68393 34 100.0 43 .................................. CTCCCTCAAGAACTGGATTGCCTCTCGCCGGTTTTGCACCGAC 68316 34 100.0 38 .................................. CTAAATATTAGGAGTGGATAAAGCTATCCCAAACTCAC 68244 34 100.0 44 .................................. CTTTTCTCCAAGCAGGGTAGTAAGGCCTTGGTTAAGGATGACTT 68166 34 100.0 38 .................................. CTATGCTGGAGCTTGGCTACTCACATAACCCCGCACCA 68094 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================== ================== 14 34 100.0 41 CTTTAGGCTTCTTTGTAAGTCGAATTAATGGAAA # Left flank : GTGTCTGGTTCGTTGTCTTCTTTGGCGATGATTTCTTGCCAATCTAAATCTAAAGCTTGACAAATTTCTTGGAAGTTCCCTCGGTTGATGCCTTTACCATTGAAAAATTTATTAACTGTCGCCCAAGATGCAATTCCTAGTTCGTTGCAAATCGCTTGCTGGGTGAGATTTTTGCGTTCTAAGGCTTTTTTGGCTTTGGCAATCCCTGTTGTAGATGCTTTTAGCGATCGCCTAGACATACTTCAACCAGCAAACTCGACTAATAAACTAGATTATACCCGGATTGTTTTTTTGTTGTCAAAACTTTTTCGGGGGGGTAAGGTGATGGCTGAAACCCGCATTCTTTCGTTGACCCCCCCGAATCGGTTGCTAGTTCTCGCTTGTAGGCTGCTGGTTGATGGGTTTATTGAGAATCAGGTGCAAGAATCTTTACTTAAACTTGACCCCCCCGAATTTATGGGTGTACAATTAGCTCAGGGTGAGGTTTTTCGGAACTAAGC # Right flank : AATAGAGGTCAAGAAATAAAATTGACCTCTATTTTTGTAAATATAAATATTCTTTTCAATCAAAAATCAGCAACTTATATACAAACTTATATATAAAATTCCCCAAGTCATATACATACTTATATACCCCTCAGCAATCATAAAAGAGTAGGGAAAATTCCCCAACAAAAGAGGGTCAATGGAATTTCTAATAACCCTAGAACAACTCAAAGCAGCTTGGGGACAAGTGCGCTTGGGAACAAAATCAGCAGGAATTGATGGAATTACAGTTGATTGGTTTGCCACCCTTGGAGACCTCCAATTAACTAAAATCCAACACCAACTGCACCAAGAAAACTACAATGCTAGTCCAGCATTAGGATTTTACTTACCAAAAAAAGATGGAGGATTTCGCTTAATTGGAATACCGATTGTAGCAGACCGCATTATTCAGCGAATGCTACTAGAAGAAATGTATTTTCCCCTAGAAAATACATTTCTGGATTGCAGTTATGCTTATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGGCTTCTTTGTAAGTCGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9883-11030 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000056.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 9883 37 100.0 30 ..................................... TTGCTCATTCGTATAAATGTGGTCTAAGCG 9950 37 100.0 41 ..................................... GTGTTTCCCCCTGGAATATGGATCTTTTTTACTGGGGTAAT 10028 37 100.0 35 ..................................... AGCACATCCTCCAGTTCGCCACCAATGATGATGCC 10100 37 100.0 43 ..................................... TGATGGATACTATCGTGAGTGCTTTGTTTCAATGTTGTTAAAT 10180 37 100.0 37 ..................................... TGTGCGATTAATGGGTATTTGTCTAAAATTAGAAAAG 10254 37 100.0 33 ..................................... GATCGCTACCTTCTAAGCGAGCATACACGCTAT 10324 37 100.0 36 ..................................... GGTTAGCAGCCCGGTTTTTTTTCGATAATTCAATTA 10397 37 100.0 34 ..................................... GTTTACCCTGGCTATTTTGATATGCTTTCCCAGT 10468 37 100.0 43 ..................................... AGATAGCCGTCCCATCCCCGAACTAAATGTTATTAACTGGCAG 10548 37 100.0 41 ..................................... AAAAAGCTTGCCGCACAGTTGCCTGTGCTTGCAAGCTGTAA 10626 37 100.0 37 ..................................... AGAAGACCCTTACAGATTTTTATTTGCTTTGCAAAAT 10700 37 100.0 40 ..................................... CGGTAATTATTGACCCTTTCGCTGGCTGCTCTACAACTCT 10777 37 100.0 36 ..................................... CGGTGAGGAATTGTGGGAAGAAATCGCTAGTGCTTG 10850 37 100.0 37 ..................................... TGTGCCGTCCACTGTCCAGCGAAAGTGTACTTTCTCT 10924 37 100.0 33 ..................................... ATCAACCTGATCAACAAAAAAGTCTCCGATCAG 10994 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 16 37 100.0 37 GTTTCAATCCCTAAAAGGGATTAATTGAAATTGCAAT # Left flank : CCGACGCGATTCGGGAAGCAATCCCTTCGCAAATTTAAGGGGTTAATTTAAATATATATGTTTTAATCCCTAATATGGATTAATAGCTGAGTTATCCCAACAAATGCGGGAAGCTGAGATATTAGATTGAGAAATTAGGTTACAGTTGGCTAAGATGGGTTTTGAGTTATAAGTGACTCGACAATTTAATTGGAAAGGGAGGTTTTGGTGATGTTTGTTAAGGGGATTAAAAGAGGCAAAATTATTGAATTATTGGAAGAGGTGGATTTTCCCGATAATCAAGAGGTTTTGGTGGAAATTAGAGAGGTTAAGGATTTTTGGTCGGCTTTACAGGATTTTAGACAAAGGGTAGATTTAGAAAGTATTGATGATGATACTTTTGATAATTTACGGGATAAATCACCTGGGAGAGAGGTTGATTTATGATTGTGAAATATTTATTAGATACGAATGTTTTATCTGAGGCTAAACGTCTTATCATTTATACTCACTAACCGATT # Right flank : TGGCGGACTCCCAGAAACCAATTTATATTTAGTTTTCAAGGTACACTTGCGCGAATCCAATACTAAAATATCGTTTCCTGCCAAAACTTGTCAAGCACAAAAAATATCAAATTGACCAAACCCAGACTCAGAAAGCATTTCCGACATTGCGCGGAACCCTTAATTACCACAAAACAACTCAAACCCTTACCAAATCTGGAACACAACCCAAAAAATTTGCTTATTCAAAAAAAACACCCACTGATTCGCGCTAAATAGTTGGGGAGTGGGATTGGCGACTAGGGATTGGGAACTGGGTAGACACTGGTAAAAAAAGAATATCTGCTAAATCAGTTCAGTTACCAGCCCGACTTAACTCTCAACCCAAATACCAGTTACCTCTCTCCGAGAATTCCCCAGCCCCCAATAGATTGCTTTTGCGACTAAACTCGCAAAGATTTCCTAGCTGACGCAGAAAATAAAATCATCCATAAACCATCAAAAACCAGGTTAATGCCTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAAAAGGGATTAATTGAAATTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 28980-28792 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000014.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 28979 37 97.3 42 G.................................... CCCAATACTCAGGGCTTGGTTGTAATTGGCGATCGCCTGGAA 28900 37 100.0 35 ..................................... CGTAAATTCAAGTCCCGTAAAATTGTGAGATGATG 28828 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 99.1 39 AGATTCAAATAACATTAATCCCTATTAGGGATTGAAA # Left flank : TGTTGCTTACGATATTTCAGATGATAATCGACGGACGAAAATCCACAGCATTCTGAAATCTTATGGACAATGGATGCAGTTTAGTTTGTTTGAATGCAACTTGACTGAGACTCAATATGCTAAATTGCGATCGCGCCTGAAAAAAAAGATTAAGCCCGACCAAGATAGCATTCTCTTCTACTTTCTCTGCGCTTGCTGTCACGCTAAAGTTGAAAGAATTGGTGGTGAAAAAGTGCGCGATGAAACGATTTTCTTTGTCTAAATGCGCGGTTGGGTGTTTGTTTTAATTTTAGTAATAGAGGTAGCTCAAATGTTTTCTCTACAAAGTTTTGATCTATATTCCACCTATTTTCCACCTCGCGCAATTCTGCAAAACCTTTGTCTGATTGGGTTTTTAGCAGAGTTTACAATTCTTGATTTCTCAAATTACGGGCTAGGATGATATAATTCTTTTGATTCGCAGAATCGTACCTTGAAAACTTCATACATTCTACTTTTTG # Right flank : GCAAATAAAACTCGTTCCCAGGTTCAACCTGGGAACGAGAAAGAACTAACTACAAAAAAATAGGATAGATTATCTATCCTATTTTAAGCTGCTAAAAGTTGTGTATGGTTTTGTAAAAGTGGGATGCGTTTGCCAATAGCTTCAGCCACAGGTTTTAAACTTTTTACAAGCTGCACCATATCTTCTAAAGAAAGTGCTTGACGGGCATCAGAAACAGATTTTTCCGGTTCGGGATGGCACTCTATAATTAATCCATCGGCCCCGCAAGCAATAGCAGCTTTTGCTAAAGGTGCCACCAATTCCCGCTTACCAACAGCGTGTGATGGGTCTACAATTACAGGCAGATGAGTCAATTGTTTCAGTGCCGCTACTGCACCTAAATCTAAAACATTTCGCGTATAGTTATCGAAACTGCGAATACCTCTTTCACAAAGTACGACATCGGGATTTCCATGACTTAAAATGTATTCAGCAGCATTGATAAATTCTTCTATAGTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATTCAAATAACATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 1760-2743 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000051.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 1760 35 100.0 35 ................................... AGTTCCGGTTCCTTGGGTGTCCTTAGGACCCCCGT 1830 35 100.0 36 ................................... ATCTTGAGATGTTCCACTCATTTCTTGCAAAAACCC 1901 35 100.0 45 ................................... TCAGTTATTCCCATTGAGTTCATCGATGGGTCGAAACGATCAGTT 1981 35 100.0 37 ................................... CGTCGGACGTATTTTCAACGTCCCAATAGGATATAGA 2053 35 100.0 43 ................................... AGTGTTGCTCGTCCTTGGAAGTCATCACCCGGTTCACTAGAAG 2131 35 100.0 41 ................................... CAATTATTGGCATTATACGAGGCTGAGTGCCAAATGCATAG 2207 35 100.0 40 ................................... CATTTCTCAGGGGTTTTTCCGCAGTTACAAAGTTGTTCAG 2282 35 100.0 40 ................................... CTTCCTGATTACTCCTTAGTTTATGCGTTGCATTTTCACA 2357 35 100.0 33 ................................... TTGAGCCATGAACGCTGACCAGAGGGGTAAATG 2425 35 100.0 35 ................................... AATATCATTACCTCCTCCGCCTATTAGTGTATCGG 2495 35 100.0 37 ................................... CTCGTTTGGTAAAGCACTTGGATGAGAGCAATCTATT 2567 35 100.0 38 ................................... ATTAAGGCGAAAATTATCAAATATCCCGAAAAAATTAA 2640 35 100.0 34 ................................... CTTTTAGGTAAAGGATAAGGAAAATTGTAACTAG 2709 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 14 35 100.0 38 GATTGACTCTTACTGAAGAGAAAAGGTGTTGAAAC # Left flank : TGAACGGGGTGGCGTGTTTTTGCAACCTCATGCGTTGAAAAAGTTTTTGAAACATTGGGAAGAAAAGTTGCAGTCGGAATTAACCCATCCGCATACGGGGTACAAAGTTAGTTTTCGCCGCTGTTTGGAGTTGCAAGTGCGAGAATACATTGCTTGTTTGATGGGGGAAGTTGATACTTATCGTCCGATGATTTGGAACCTTTAAAAAGTTAATAGCAACCGCCAAAGCGATTAATCCATCCTTGGTTGCCCAAATCATGCTCAAACCATAAGTTTTTCTGAATCTTCTGCCTTTTGCTATAACTAACTGAGGGGGTCAGCCGATGGCTGAAACCCTCATTATTTCGTTGACCCCCTCAGATAACCCTCTGAGTAAGGGTTTGAAGTGGGTGTTATTCTGGGTTATTGAAAAGATTTGTCTCGTTTTTGCTTGCCCAACTTGACCCCCTCAGATTTAGGGGTGTAGAATTAGCTCAATACTTGGCTTTTAGAAGCTAAGG # Right flank : CACTGACCAAAAGCATATTATCCCCTGGATAGTTTATTAATCCAGGGGTTTGTTTTTATGAAATATTTACAAGTAAGACTGTTTTTTGAATTTCGACTTTTAACTTTTAACCTGAAACAAGCTTGCTCAGTAAATTTTCAACTCATATACCAACTCATATACTAATATCTGTACTCGAATACGAACGCAAATACCGGACTGTAAATATGGAGATGTAGAGTTTTAAACCCAATTAATGACAGCAATCTTCATCACCCAACCTGGCAGTTACTTAAAAGCCAAATATCATTACTTCCAAGTATTTCAGCAAAACAAACTGTGTTTACAAATACACTCTTCTCAAGTTAGTCAAATTACCTTGTTTGACAACTGCCGCTTACAATCCCAAGCAGCATCCTTAGCTGAATCTTTAGCAATTCCAGTCCTGTTTCTTGACAATCAAGGTAATTATTTAGGACGCTTGCAACTAGAATCACAACATTCAGCAAAATACTTTCAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTGACTCTTACTGAAGAGAAAAGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 7121-8566 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000051.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================== ================== 7121 36 100.0 40 .................................... GTTAAATCTTCTCTATCTCCTTTTCTAGTTCTTGCTATTG 7197 36 100.0 41 .................................... TAATTACATCTTTATCTAACTTAATTGCAAGCAATTTAAGA 7274 36 100.0 37 .................................... AACCTCAAAGTTATGCGAGACAAAACAAAGAAGATTT 7347 36 100.0 36 .................................... TCAACAGGGGGTTATTATCTACCAGACTTCTATCTA 7419 36 100.0 46 .................................... CCAATCGCCTCAGCTTCAGCCTTGTATCGCTTAAGATTCGCTAAAG 7501 36 100.0 37 .................................... ATAGAATAATTGATGACATCAAAGCTTAACTTTAAAT 7574 36 100.0 46 .................................... ACTATCAGAAATAGTGCCATTAATATCGGGAATAATGCTGCTAGCA 7656 36 100.0 36 .................................... TTCAATTGGTTCAATTTCTGGCTCGTCTTCTTCGCT 7728 36 100.0 39 .................................... TAATTGTATTTGTGCCTAACGTTAAAGTAATTGAGGCCA 7803 36 100.0 36 .................................... TGATTTCCGAGGCTTATGGAAGGCTGTTGAGCGGAG 7875 36 100.0 35 .................................... TAGATCTGAATGATTGATGTCAAACTTTTTACCGC 7946 36 100.0 114 .................................... TACTAAACAACCGGAATACTCAGAAGAAGGTGTATGGGTAGCGACAGGAGTTGCACCTGCTGTTTCGAGCTTATGAGACTCGCGTGACCGGAATACTCAGAAGAAGGTGTATGG 8096 36 100.0 35 .................................... TGAAGACGAATTCAAAAATACTAAACATGAATGTC 8167 36 100.0 36 .................................... AAGGTAATATCAGAGAATATCTAATAACAACAGTGC 8239 36 100.0 36 .................................... TCTTCAATTACATCAGCATCATATAAATGAATAAAC 8311 36 100.0 37 .................................... CAGGGCAATCGGTGTGCGGTGTTGATGCGAAAAGAAG 8384 36 100.0 38 .................................... ATAATCAAACCCTTTCATTCTGTGCAATGCGGTCATAA 8458 36 100.0 37 .................................... CCAATTACTACCATGCCGAAGTTTGTCACCCATTCAA 8531 36 91.7 0 ................A....T......A....... | ========== ====== ====== ====== ==================================== ================================================================================================================== ================== 19 36 99.6 42 GTAGCGACCTTCATTAGAAGGAAAAGGTGTTGAAAC # Left flank : GTGCAATGTCTAATCCCACAGCGGTTTCCGGTTCTCTGATTAGTATTTGGCAGGGAAAAGGAGATAAATGGCGAGATATTGTGCATAAAGTTTGCAGGAGTAAAGATAACCGAGAAAATCCTAACCCTAACAGACCCCTTTGGTGTGGAGATTCTGAAAATCGACCGTCGGGTTATGCGGTGCGACAATATAAGGATTATTGTTTGATTACTGTATTTGATAAAGCTGTGGAAGCAACGTTGACAAGTAAAGGTTTCCAGGTTGTATGGCAATGTTGAAAAATCAGGTAATCTCTCCCAGCTATCCCGAAGTCCTAAAATTGCGAGGGGGTGAAAAAATGGCTGAAACAACGCAATTTCGTTTAGACCCTCGCTGCCTTACTGGGCAAGGGTTTCAGGCGTTAAAACAGGTGCAAGTTGGGAGGTTTGTGGTCACAAAATTGCTACCCCTCGCAAACTGCTTCTGGACATTAGGCAGGATAAGGGGTTCAATAGGGGTAG # Right flank : CACAAACCAGCAAATTGTTGTGTTATCAGTTTGCCATCTTTGGTAATGATCTTCATTAGAAGGTGTTTCGCAAAAAAATAAAGAAGCGAATAATCTTTTCGATCTTCGCTTCTTTACATTTATTACCCAAACTACTCAATCAAACCTGAGTATTACAGTCCTTAGCATCCTTCAATCGCATCGTCCAAAACTGAATTGTATCCGAAATTTCCATCAACAAATCAGTCAACAAAACTTGCTGATTAAAATCTAAATTTTGAAAACGATTCTGAAAATCTTCAGTCGTCATCGTTTCCTGAATTCGCAAATCATTACCAACAATCTTGCACAAAACAACCCGCGCTACACCCCAAGCAAAATAACGCTTTTCCTCCTCCGAACCCGTTGCAGCATCAGGCATTCTGCCACCTAATAAAGCTTGGGAACGCGACATTGCCCAAAAGCGTTCTACACCCCAACTAGCCACATAATCAGCAATGCTACTTGCCGCCCCCTGCCAA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACCTTCATTAGAAGGAAAAGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 185062-184360 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCE01000007.1 Phormidium ambiguum IAM M-71 NIES-2119_Scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 185061 37 100.0 35 ..................................... GCCTACGAGTACCATGCCCGTAACGGTGGGCAACA 184989 37 100.0 37 ..................................... GAAGAGACTCAAAACATAGAAAGATTAAAGCGATTAT 184915 37 100.0 43 ..................................... ACTGATTTACCTCCTTCCAGGTTAAACCGAACCTTTACGCCTC 184835 37 100.0 35 ..................................... GGGCGGTTCGCTCGCTGAATTAATCAGAGCCATCA 184763 37 100.0 35 ..................................... AAGACAAGGATTGCGCGCGCGCGCGCGATAACATA 184691 37 100.0 38 ..................................... CTGGAAACGCTTGTATTTACTTTGAATAGTACTCACAT 184616 37 100.0 35 ..................................... GGAACTGGCTGCACGGCCCGTGCCGAAGTTTATAC 184544 37 100.0 39 ..................................... AGCGGCTTTATGATTATCGTCGTAATCGTTGTGATGAAG 184468 37 100.0 35 ..................................... CAAGCCAGTGGAAGCTGCAAAGAAAAAAGCCTCAC 184396 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 100.0 37 GTTGAAATTCAAACTAATCCCTATCAGGGATTGAAAC # Left flank : CACAGGCCCCGTGATCGCTGGAATTATCGGTAAACGCAAATCAGTTTATGACTTATGGGGAGACACAGTTAACGTCGCCAGTCGCATGGAATCCCAAGGAGAAGCAGGTTTTATTCAAGTTACCCACACAGTTTACGATCGCTTAAAAGAAAACTATCATTTTAAAGAACGTGGTAGCATCGCCGTCAAAGGTAGAGGTTTGATGACTACTTATTGGTTGTTAGGTCGCAAATTGACACATTGAAGTTTTAGCGCGGATTGGTAGGTGTTTTTTTCAGTAGTTGCTTTTTGGCGGCTGAAATCTTGACTGGGTAAGGTTTGGAGTTTTTTCTGCGTGCGATCGGTTCCGCGCAAAGTCTGAAATCCTTTCTCGGCTTGGGTTTGTGGCTTTTGGTTCTTTTCCTCGCTTGACAAGGCAGTGGTTGCAAGAGTACTTTTATATTTGGTTCGCGCAATTGCACCTTGAAAAGTGAATATATTAAGGCTTTTGGGGTCTTGCC # Right flank : AGAAGCTCACTAACAATATCATTGTGATTTTGTTAGAATTTCTCGTTCCCTGATTAGACCTCTCCAACAAAGATTGTAGAGACGTTGTATGCAACGTCTCTACTTTGCAAGAACTAAGCCTTTTGCTTACCAATTTTTAGTCAGAGGCGTGTTTATATATAGCAACCGCCAAGGCGATTAAGCCAGGAAAAAGAGCTAGAACCCTTGTTTTTAAAGCTTTTCCCTTCTGCCTTCTGCCTTCTGCCCTCTGCCTTCTGCTACAGCTTGAACAATGAACACAGAACATGGAGAATGGTGAACCACATAATTACTAATGCTACCCATCAGAAATTCGCTGAAGCCGGAAAGCCCGCGACGACCCATCATAATTAAATCAGCATCCCAACTTTTAGCTAAATCGCAAATTGTTCGACCAGGGCCACCATAATTGAGAGTATATTCCGCAGGAACTCCAGCATCAGCAGCTTCTTGCACCCAGGATTCTAATAAACTCAAGTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCAAACTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //