Array 1 506867-507153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007172.1 Listeria ivanovii WSLC3009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 506867 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 506931 29 100.0 36 ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 506996 29 100.0 36 ............................. GTGATAGAAATGTGAGGACTATCCGTTGCCACGCCA 507061 29 96.6 35 ................A............ ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 507125 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 95.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGCTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTGCCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 516141-516753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007172.1 Listeria ivanovii WSLC3009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 516141 29 100.0 37 ............................. AACGACGAAATGAACAAGTTATATAAAAAACATCCAG 516207 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 516272 29 100.0 37 ............................. AGCTTCCTTTTTTTAAGAAATTAGCAACATTTTCAGC 516338 29 100.0 34 ............................. GGAGGAACAGCGACCGGTTTCGGCTCGGATATTA 516401 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 516466 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 516530 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 516594 29 100.0 36 ............................. AATATCATAGATGCGACTACAACGCCGTCTGACACG 516659 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 516725 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : TAGCTGCTTTACAGTATTCTTGCTTGTATCTGATGGTGACATTTCTAATCATGATTGGAACCTCTTATAAAAATTATCAGGAGTTATTAAGCATAGATGGTGAAATATTGTATCAATACTTCATAAATGGAAGCCTGCAAATATTTTTTTATAGTTTAATTATCCTATTAACTTATAGTATAACGGGAAAAATAACGTATGCTCTATATCTGAATCTAGGGTTAATTATCTTGCTGCTACCAGTAATAAATATTAATCATATTCTTCCTATTGGATTAAATGCTATGGGAATGCTTGAGGATAGAACGCCATATCAATTATCTCTACAATTACTGATAGCCATATTGATGATTACAATGATATTAATTTTAGTTAATAGAAAAAGAACGATACCGCAATAAGCATAAAAAAGGAGCGAAACAATGAGTGATACTATAATTGAATGTATTAATGTTTCAAAAGAGTTTAAACATATACAGTTGTTTACGGATGTTAATATA # Right flank : TATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAACCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGTAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //