Array 1 30-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000027.1 Akkermansia muciniphila strain GP11 scaf-27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 30 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 94 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 159 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 224 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ================================== ================== 4 31 97.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : AGCTTGTATTCCGCCAGGGTGATAGCCTGG # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 271-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000011.1 Akkermansia muciniphila strain GP11 scaf-11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 270 31 100.0 34 ............................... GCACAATGTACAATAATGCAAAGTAGAACGAAAA 205 31 100.0 34 ............................... TAATCATATCCCTACTAAGCTAGTAGGAATTAGG 140 31 100.0 34 ............................... AGGTAGCGTCCGCTATAATTACCCTACCGAAGGC 75 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 4 31 100.0 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : CAGTGTATTCCATGGGTAAATTCCTTTACTGATTGTCGCACTCTC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 464-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000004.1 Akkermansia muciniphila strain GP11 scaf-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 463 31 100.0 34 ............................... CACAGAGTGGTTATTATAGGTATAGAAGTATTAG 398 31 100.0 34 ............................... AAGAATAACCAAATTGTGCAGATTCTACCATATC 333 31 100.0 34 ............................... CGAAATAAGGGGGTATTATTATTTCCCCTATCCT 268 31 100.0 34 ............................... CGCAATGCGGGCAACGGCCATTTACGGGGGTTAC 203 31 100.0 34 ............................... GTCATGATGGATAGTGAGCAGAGCAAGAAAGCCT 138 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 73 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 7 31 100.0 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : CCGGCTCGCAGAATATAGGCTGGAGTTGCCCGTTGGTCGCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 211-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000025.1 Akkermansia muciniphila strain GP11 scaf-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 210 33 100.0 34 ................................. CGATAGGTACGACGGATAGCTCCTGGCGTAACGG 143 33 100.0 34 ................................. ACGTCCTGGCCGTTATTGCCATTGCCGTTGACAA 76 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CGGATTGAACTTAAACGCGATAGCATCCTTCGGAGTCGCACTCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9764-9212 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000025.1 Akkermansia muciniphila strain GP11 scaf-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 9763 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 9698 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 9633 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 9568 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 9503 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 9439 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 9374 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 9309 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 9244 31 83.9 0 ........C....G........G....C..G | C,G [9214,9218] ========== ====== ====== ====== =============================== ================================== ================== 9 31 97.9 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : AATTGAAACTGTTTCTTCGTAAATCAAGATATGCAGTTTAC # Right flank : GGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 96322-96487 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000008.1 Akkermansia muciniphila strain GP11 scaf-8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 96322 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 96388 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 96455 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GTCATCCGAGAACTCGCAGGAAAACCTGAACTTGTTCTCCCGGGCCATATCCCCTTCTTCCGTGATAGGACTTCCGAAGGGAGCATACTCGTAGCGGGCTTGTTGTTTCTGCTGACCGTCGAAGATGGAAGTGACATTCTTCAAGGCATCGTACATGAAGTAGAGATGCTCTTTTACTTTCATTCCGTTCTCCTGCCAGCATGTCATCATCAGGATGCGCGTTGCCATGGGTTCCGTCGGGTCCCACAGGTAGCTCTTTACCAGCAAAGGTTCGGGATGCGTCAAATCCAGCTCGGCTACCTGCAAATAGTCCCGGTACAGGAACCAGCAATGGCTGGATACTGCCCCATTGACGGTGGCCTTCTTCTCGAAGCGCCTTCCTCGGTAGTCGTAGCCGCAGGTGATGGTTGTTCTGCCATCCTGGCTGGTGAAGACGATGGGGCGGTCGTTGGCGTCGTAACTGATTTCCCAGATACCTGTCGAGGTCCTGATGCGGGTNC # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1706-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKH01000018.1 Akkermansia muciniphila strain GP11 scaf-18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1705 31 100.0 37 ............................... GAGAGGAAATGGCTGTCCCGTTTGCAGGAGCTCCAGT 1637 31 100.0 34 ............................... GAGAGTTACAGGGCACTTTGCCTGTTTAGTACGC 1572 31 100.0 34 ............................... CTTCGGGGAACAAGGCCAATTTAGCATAGGTGTG 1507 31 100.0 34 ............................... CCGGTTAAAAGCTTGCGTGATTTTATGGCTATCA 1442 31 100.0 34 ............................... CCCTGCGCCCGGTCACCAACAACGACCCGAACAA 1377 31 100.0 34 ............................... AATGACAAAGAAATCGGGACGAGAACCTCCATCC 1312 31 100.0 34 ............................... CTCATACAACCCGGTAGCCTATCAGAGCGAACTC 1247 31 100.0 34 ............................... TGAGAGGCCAGACGGGTGATGAAGCGGCTGTAGG 1182 31 100.0 34 ............................... CGCGTTCTTCGCGCTGAAACTGGCAATCGTAACC 1117 31 100.0 34 ............................... TATCCGCGGTAGCCGTGGTAGCCGTGGGTATCTG 1052 31 100.0 35 ............................... CCAACTTGGGAGTCCGCAAAATCATTTGCCCTCCA 986 31 100.0 34 ............................... CGTGGATGAGATACGCAAGCTCATGGCCGCCAAG 921 31 100.0 34 ............................... CATCCGTTCAAATCCGTCCGCGGCATCCGCGTGT 856 31 100.0 34 ............................... CCTACGTAGTCAGATTAAAGGCTTTAACGGAAGG 791 31 100.0 33 ............................... CGCCGCCGCGCGTAGGTATCCTCCGCCTGTTCG 727 31 100.0 35 ............................... ACAACTGATAGTGGTTTTCACCGGGGAACGCGCTT 661 31 100.0 34 ............................... ATAAGTTGTATGTGGCTAGCTGCTTCAGCGTCAT 596 31 100.0 35 ............................... TATACGCCGGGTGATGGACCTATAGCTTTCAACCT 530 31 100.0 34 ............................... GTAACCTACTTCATAGGGAGTAGGAATATGGGGT 465 31 100.0 34 ............................... AGCGTCAATGTCCATGTCTTCATCATTGTCCCTC 400 31 100.0 34 ............................... TGTTTGTGGAGACCCTTAGCGGCAAGACCAAAGG 335 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 270 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 205 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 140 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 75 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 26 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : CTGAAGGTGTGCCGCAAGCGAAACAATACAATAAGTCGCACCCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //