Array 1 11901-11260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYH010000022.1 Streptomyces sp. RM72 RM72_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11900 29 100.0 32 ............................. TTCGGCCGCTTCCGGTTCCGGCCCTGCGTCCC 11839 29 100.0 32 ............................. CTGTGGGCCCTCGCCCAGTCCGTGGCCGCCCG 11778 29 100.0 32 ............................. TGGGCCCAGTTGCCAGCCGGGCGATGTGCCGG 11717 29 100.0 32 ............................. GCAGGCACAGCCACCAGGGCGATCGCCCCGAC 11656 29 100.0 32 ............................. ACCCCGGCTGTGGGGCAGCTGGCCGCCAACAC 11595 29 96.6 33 ....................A........ GGGGGGCAGTGCCCGCGTCCGCGCCCGCGGTGT 11533 29 100.0 32 ............................. TGGGCGGCCTCGGCGATGGTGAACCAGATGCG 11472 29 100.0 32 ............................. TGCACGTCAGTCCCTCCCGCGGCGTAGCAGGC 11411 29 100.0 32 ............................. AGCATCGGGTGCGTCGGACTCTGGCAGTTCAA 11350 29 100.0 32 ............................. GGCGACTTCCCCCAGCCACGCGGCCGGGACAG T [11340] 11288 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACTGACCACGATTGAAGGTGGTCACGCCCCACCCCTTCGCCAACGCGGTCTCCGCAATCGCCTTGCCCAGGAACCACGTTCCGCCCATGACGAGAATCCTCATGCCCTGATCCTGCCCTGCCCGGGGCGCGGACGACAGGGCGGGCTGCGCCGCTGGCCGAGCTGCGAGTGCAGGGGCCACGCATGCCAGAGGCGACTGCAATGCTGGGAGGGTGATCGGTGGTCCCCCTGGAAAACCTGCTCGACGTCGACAGACGGCACCCTGTGCACGGCAGCTGGGCTGCCAGCACCAGCAGGTGAGCTTCACGCTTGACACTCGAGCAGTTCCACGCGGGGCTCATTCAGCACTGTGCGAGGGAAGACCTTGTCCAGCGGCACGGACGATAGGCCAGCTCCGAAGTGCCCCATGGATGGACACCGCCCTATGTCTCATTTGTCGATTTCTGCAAAGCTTGCTGAAAACGCGTCCACACGACCGTAAACTCGCAGGTCAACCAGT # Right flank : GTGCGCCTCCACCGTCCTCGCTTCGATCTTTCCCCGGACGCCGTGCCGTTGTTCGGCGCGTGACGGCGTTTCCCCTTTGTGCAGGCGCGTTTCGGCTGCCTCGTCTTGCCTGTGCAACAGGCTGTGCAGCGATGGTGCGGGGTGCGGACTGTGCACGGCGCCGGCCGTCTGCACAATTCAGCCGTTGAGGCTGCACAACGTTCTGACCTGCGGTGGTCGGTCCCGTGGTCGGGGCTGCACAGTGCATGGCCGGGGTTGTGCAGGCCGTGGTCGGGCTGCGCATTGGCCCGTTTGTGCTGTTACCTGGTGTGCGCAAGCGACTACGGTGACGGTCGACTGATGGTGATCACTGGGGGCTGGGATGCGTGCGACTGTGCAGGGACGACGAACCGAGGCGCTGTGCTGCGCCGTGGTGCTCGCCGGGGTGTTGGCCGGGTGCGGAGACTCCGGCGGCGACGCCAAGCCTGCGGCCTCTTCGTCGGCGTCTGCGCAACCGTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23832-23255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYH010000022.1 Streptomyces sp. RM72 RM72_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 23831 29 100.0 32 ............................. AATCCCATCGACTGGGCGGCCAGCTCCTGCTC 23770 29 100.0 32 ............................. AATCCCATCGACTGGGCGGCCAGCTCCTGCTC 23709 29 100.0 32 ............................. GTGGCCTGGGACCCGGTGATGGGCTGCTCCGA 23648 29 100.0 32 ............................. GGCAGCGACCGCTCGGGCCGGTGCGGGTCCTG 23587 29 100.0 32 ............................. GTCACCCGCGGGTGGGGAAAGTCAGACGAACG 23526 29 100.0 32 ............................. GTGTTGTCCTCGGAGAACGCGAGGGCCTGCGG 23465 29 100.0 33 ............................. AGACCGCCCAGGTGACCGGTGATCATCCCGCCG 23403 29 100.0 90 ............................. TCGTGCAGCCGGTTGACGTCCACCTCCCGCTCCTGCTCCCCGCAGCGGGGATGGCCCCGATAAGGGTCCGTTCGGCCCGGTCAACGGCGT 23284 29 93.1 0 ...........GT................ | T [23257] ========== ====== ====== ====== ============================= ========================================================================================== ================== 9 29 99.2 40 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCCGCGAACGCCCAGCGGGCCCGGGCCGGACAGCCCGCCCGCTTCGCCGCCGTCGACGTGGACGCCCTGCGGGCCATCGCCACGCTGGCCGAGCACCACGGCGGACGACTCGCAGTCACCCTGCCGCCCGGCTTCACGCCCCGCCGGACACCGGGACCGCAGAGGGTTGCTCCGTCGATGTCGGCAGCTCGATCCGGGGCGACAGCACGCCCGACGCCCGTAGTCAGGGGCCTCCAGTGACCACGGACAGGGCGGGGCCATTCACCGTGAGGTCGTCCTCGGCTCCGCGCGATCTGGTGGTGGATGTCAGGGTCGGGCAGGGTGCAAGGACGACCGCGTCCCGCGCCACTGCCTCGGTCCCCGCTGACGGATGGCCTTCCTGCGACTCACGCTTTCGTATACGCCGACAGATACACACTGACCGGTGTCCATTTTGCCGGATTCTGCAAAGCTCGCTGAAAACGCGTCTCCGCGCCCATAGAATCCCAGGTCAAACAGT # Right flank : CGTGCGCCCCTGCGGGACGTCGCCCCTGGGCCCCCGTTTGGGCATGAAGGGATGCTTCCTGCCCTGCTCAGCTGCTGTTTAGGGCAGTGAGCACGTGGTCCAACTCATTGGGCATTACAGCAACAAGAAGAGCGCCCCCGGGAGAGCTGCACTCGATGATTCTGGACCCACCGTTTATCTTCACCGCCTCGCGCCATGACGGTGACCGCACGCTGACCTGACGCAGACCCTCGGGGAGGGACACTGCCGCCCCGGCTTTGGTCCGTGGCTCCCAGCCCACTCCAGAAGGGGCGACCAACAGTCGCCCACGCAGCCACTGCCCATCTAGCGAAGGATGCCGGAGCAGGCAGGGAATCCTGATCTCATTTCCCTGAGTGGCACTGTCTGCCCGCTGCTTCACTCTGCGTCGGAACAGCCACGTCGTCAGTCCTGCCGCCGCCAGGAGAACCACCAGTTCGATCACCGGAGCATTCAAGCAGCGCAGAACCTTAGTGCCCAGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42336-41338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYH010000022.1 Streptomyces sp. RM72 RM72_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42335 29 100.0 32 ............................. GACACGACTGACTGCTGGACCTGGTCCAGGCC 42274 29 100.0 32 ............................. TGTGCGTACAGGCCCGTGTAGGCCCGCAGCTC 42213 29 100.0 32 ............................. ATCGTCGTCAGCTTGTGGATACCGGATCCGCC 42152 29 100.0 32 ............................. GGCACCAGCCTGTTCCTCGGCTCCGGCGGCTA 42091 29 100.0 32 ............................. CAGGCCGTGAACGCCGACAAGCTCGGCGGATC 42030 29 100.0 32 ............................. CGAAGGCCAGAGCATCGACGTCGACGTCCTCA 41969 29 100.0 32 ............................. GGAGCACCGGGCAACGCGGGAGAACCCGGCGC 41908 29 100.0 32 ............................. GCCGTTGGGCGCCAGCGACGTCGGCCAGCAGG 41847 29 100.0 32 ............................. TACGCCGACCGCGCGGCCGTCCAGGCCGACCG 41786 29 100.0 32 ............................. TGGCACGGGGTCGACGACGACACCCCGCCCGG 41725 29 100.0 32 ............................. TCGAAGCGCATGATCATCTGCACGGACGGCTC 41664 29 100.0 32 ............................. GCGGCCGGGATCTGCGCGGCGAGCCGGGACTC 41603 29 100.0 30 ............................. CCCTTCCCCGCCGGGGGTGGCGTCGCTCTT 41544 29 96.6 31 ..............T.............. ACGTGCCGCAGTCGTGCACGCGCGGCCACCA 41484 25 82.8 32 .............T....----....... GAGACCGGAAAGCCGGAGCCCGTGTTCACGGC 41427 29 93.1 32 .............T...........C... CACCGTCACACGACTGCCTGTGTGGTCCGATC 41366 29 82.8 0 ...A..................CC.G..G | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGACACGCGAATGCAGGCGTGGCCTTGCCGATGTCGTGCACACCAGCGAGCCACACGGCAAGGGCACGCGCGTCCGACTCCCCCCGAGGCAGCGGCTCGGCGATCAGCCGCCGCACTGCTACGGGCAGCCACCGGTCCCACAACAGGCCCGCTACCGCGGCACTGTCCTCCATGTGTCGCCACAGCGGCAGCCACCCATCGGTCTTACGGTCATGCTTGGCCCACACCGCCCTGGCCGGCTCCCCAAGCCGACGCAGCAGGATGGAACGGGCGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCGGGCTTGCTCCATCAAAACCAGCAAAGAGAAGAGTCTGCTGAGAGACGGCACTTCCTAGCCATAGGATGATCGGCTAACCATGGACGCGTCTACGGAACCACCCATCACCGCATGTCCTATTTGTCGGAATCTCTGAAGCTTGCTGAAAACGCGCCTCTGCGGCCATAACCTTGCAGGTCAAACAGT # Right flank : CTGTGAACCGGCTCAGTCCACAGCCCATGGCTCGAAGCATGGGCCTCCTGAAGATCACTGACCGACACCCGCCCCCCAGGTATTCATGGCGGTATACTTTCCGACGTGGATACGACGATCAAGATCGGTGCGGAGACCCGCGACAAGCTCGCCGCTCTGGCCGAGGCCAGGAACATGTCGATGCGGGCGTTGATCGAGGAGTTCGCCGCGACCGCGCTCACTCCTGCGCAGTTGCGTGAGCGAGCCGAACGCACGGACGCGTTCTTGGCCGCAGAGTTCGGGCACCGGGTCAGCGACGACGAAGCCGGCGCATTGCGTGAGCGGATGCGGCAGGCGCAGAACGCCGGGCAGGCTCGGGTTCGGGGCACGGCGGCGTGATCGTCGAGCACTACGTCCTGGACAGTCGCACACTCCTTGCCCTGGGGGGCAACAAGCAGGTCTCCGGGCTCATCCACATTGCCGCGGGGGACCCCACGGTGCGTTTGTGGGTCCCCATCGTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 52062-53231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYH010000022.1 Streptomyces sp. RM72 RM72_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52062 29 100.0 32 ............................. CTCGTCGAAGCCGTCACCGTGCTGAAGGACGC 52123 29 100.0 32 ............................. CTCGTCGAAGCCGTCACCGTGCTGAAGGACGC 52184 29 100.0 32 ............................. GTGGTCGCCGCCGTCTACCGCAACAAGGACGT 52245 29 100.0 32 ............................. TGGGCGGCACCCCGCCGACCGTGAAACGGCTG 52306 29 100.0 32 ............................. GTGCGGGCGTGGGGGAAGCACTCCGCGACCGA 52367 29 100.0 32 ............................. GCCCCTCCAGGCGCCGCTGAGCGGCCCCGTGG 52428 29 100.0 32 ............................. CCCGCCCGTACACCCCGGCCAGCCCGCTCCCG 52489 29 100.0 32 ............................. AGCGGGGTCTCCGACCCTTTGCCGAGCGGCTC 52550 29 100.0 32 ............................. GGCTCGGACGCGTGGACCCGGCGGACGCAGGC 52611 29 100.0 32 ............................. GCGGCCGCGCTCGCGATCGGGCGCCGCAAGGT 52672 29 72.4 14 ..................CTACC..G.GA CGTCTCCTCGGCGT Deletion [52715] 52715 29 100.0 32 ............................. TGGAGTCGCTCTGCTTGTGGTGTGGCCCGATG 52776 29 100.0 32 ............................. TGGAGTCGCTCTGCTTGTGGTGTGGCCCGATG 52837 29 96.6 32 ...............A............. CACGCCATCTCGTTGGCTGCCTCGTCGAGCCA 52898 29 100.0 32 ............................. GAATTCACGTCGGAGTGATCAAGCAGAAGTAC 52959 29 96.6 32 .............T............... GCGATCGACGCGACGTACTGCCAGTCCCTGGG 53020 29 96.6 32 .......................A..... ATCAGCGGCATCGGCGTGCCGATCGCCATTGG 53081 29 86.2 32 ...........G....G......A.A... GACTTCGCCCTGAACAACTGTTGGGCGGCAGG 53142 29 82.8 32 .C..G......G........CG....... CTGCTCACTGGCGCCAGACTCAGTGCCGGTCT 53203 29 96.6 0 ......................G...... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.4 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCTCCGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTCACGCGCTGGCTGCTGGAGATCTCCGCCGGGGTCTTTGTCGGCGACCCCTCAGCCCGCATCCGCGACGCACTCTGGGCAGAAGTCCAGCAGTACGCAGGCCAGGGTCGCGCCCTGCTGGCTCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGCCCCCAACACCCCCGGCCCAGCTACCCAGAACGGACCACCATCCGGCTGGAGCAGAGCCGCCAAACGCCGACGCTTCGGCAGAGGCTGATACACCTTGAGAACCTTATGGTCGATTTGCCAGAATCAATGAAGTTACTCAAAAACCGCCTCCAGCGTCCGTAAAAACGCAGGTCATCCAGT # Right flank : CGCGTTCGCGAGGACCGCGATGCCGGGCAGGGACGCCAGATGCTCCGCCGTGCCGGGCCGGGCACGGTCGGCTTCCACCACCGCACACGCGGGGATGTAGAGGAACCAGCCGGCTTCGACGTGAGCACGGTGGATGAGGCGGAAGGCAAGGAGGTTGCCCTGACCGGCCGCGGCCATCGCGGTGTCGTCCAGGACGATGTGCATGGCGTCGCTCATCGGGCGGTCACCCGTGCCAGACGGCGGTCCAGCTCATGGTCGAGGTCCCTCTCCTGATCGACGGACGGCGGCCCGCGCCTTCTCGGCTCGCTCAGCCCGCTCTGCGGGCGTCAGCAGGGTCTGTGCCATCCACGGCAGGTAGGCGCGCAGTGACAGACCTTCCGCAGCGGCTATGGCAGCGAGCCGGTTTTGGGCTTCCTCGGGGATGCGAACGCTGGCATCAGTCATTCTCGTGCTCCTTCCCACTCCCCCGTGCTACGGGTACGTACCCGTAGCACGAACGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //