Array 1 1253639-1249888 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNW01000001.1 Methanofollis ethanolicus strain JCM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1253638 29 100.0 32 ............................. GTGTACCGGAAGGACATGAGTCACCCGATCAC 1253577 29 100.0 32 ............................. ACTATAGAGGTTTGCAGGTATCCGAGCGTATC 1253516 29 100.0 32 ............................. AGTCTGACGGCTACGTCGAGCGCATCGACGGA 1253455 29 100.0 32 ............................. CCTTGCCGGAGTAGACATCGAGGCCCGCGGTC 1253394 29 100.0 32 ............................. ATCATGCCCATGGTGGCGGAGGTGGCGCCGAA 1253333 29 100.0 32 ............................. GTCATTCGTGTCCCGCCCACTGCCACGGTGTT 1253272 29 100.0 31 ............................. TGTCCGACCAGATCACCGGCGCCGAGGTTAC 1253212 29 100.0 32 ............................. AATACAGCGCACGCATGAGCGTTGGCGCTATG 1253151 29 100.0 32 ............................. AGATCGCCTACACCATTTCTGACCTCTACCGC 1253090 29 100.0 32 ............................. GTAAATATTTGGGATCGTCTGTCTTGCCCGAG 1253029 29 96.6 32 ............................C CGCTTTCATAAGTCTGATTGGTCCGCCGTTTC 1252968 29 100.0 32 ............................. ATTTCCTGATGGATTCGCTGCTCTCTGATGGG 1252907 29 100.0 32 ............................. CGGCAGACGTGTCCTGAATGTTGGTGGGTGTG 1252846 29 100.0 32 ............................. AGCGCGTGGACGCCGTGTTCAACAATTTCGAG 1252785 29 100.0 32 ............................. ATTTTCCCACCAGATTTTCACAACACCCGTAG 1252724 29 100.0 32 ............................. ATATATCAGAAAATCGTCGGCCAAATCGGCAT 1252663 29 100.0 32 ............................. GAAGCCGAGTCGCGCACCGCGTTCGAGAACAA 1252602 29 100.0 32 ............................. CGGTCGGTAGTTTCCTTCCGCTTTCGACTACG 1252541 29 100.0 32 ............................. ATGAGCTGCGCTGCAGGGTCTGCTATTTCCGG 1252480 29 100.0 32 ............................. GCATTTCTGACGACGTTCTTAGGTTTATTCGG 1252419 29 100.0 32 ............................. CGCGCGTGCTATCTGGTATTCGTTTCGGTGGT 1252358 29 100.0 32 ............................. TGACCTATAAGGACTTGATTACTCTAAGCGAC 1252297 29 100.0 32 ............................. CAATTGTTTAAATAGCATCAATGCCTCGCGTG 1252236 29 96.6 32 ............................T ACTTTGCAAATTCGGACCATACCAGTGGGATC 1252175 29 100.0 32 ............................. AGGCAATCGAGAAAATCGATAATACTACAAAT 1252114 29 100.0 32 ............................. CCATATAATTCAACATCCGTTCTCATTATCGA 1252053 29 96.6 32 ............................T GTCCATCTCCTTCGAGGATTTCATCGCCTTTG 1251992 29 100.0 32 ............................. CCCCGTAGGTTGTAGCGAATTCCTTTGTCTGC 1251931 29 100.0 32 ............................. ATTCTCCTCCAACTGTTACCTCGGTGGTTTTC 1251870 29 100.0 32 ............................. ACACAAGCGCGGCCACTGCGCCGGTAGTAATA 1251809 29 100.0 32 ............................. ATTACCGAGTTTAGAGTCTCAATTTTCTCGCG 1251748 29 100.0 32 ............................. ATGCAATCGCAACCCTCAGATTCTCCGCCCCG 1251687 29 100.0 32 ............................. ATCCTCCATCGAGCCGTTCCAGGTGGACGCGC 1251626 29 100.0 32 ............................. AACCAGGAGACCGAGAGCATCCCCCCGGAGGA 1251565 29 100.0 32 ............................. GTGTACGCGGTCTCGCGGCCGTGGTGCCGGTA 1251504 29 100.0 32 ............................. GCGCTGATCGCATGGCCGAGCGCCCGGACGGT 1251443 29 100.0 32 ............................. AGGCCGCACCCGGGCGTGGCATGCGGCGATGG 1251382 29 100.0 33 ............................. TCAGAACAGGCGCGACCGCGACGGAACCAGAAA 1251320 29 100.0 32 ............................. GTCGCCAGCCATTGTCTATCGGGTTTTTTAGT 1251259 29 100.0 32 ............................. GGATTCAGGGGGTCTGCTCCAGGATGGCCCGT 1251198 29 100.0 32 ............................. CCGATAAACCCGAGTCCGATATTGTTTGTTGC 1251137 29 100.0 32 ............................. TGGGGTACCTGCCTTACAGACTCGCTATTCAT 1251076 29 100.0 32 ............................. TCAAACAAACCCGAAAAACAAGATCCTATCTC 1251015 29 100.0 32 ............................. TCAACGATCGATATACCATCCTGGAAGCGAAT 1250954 29 100.0 32 ............................. GATCGCCAACGGTCGGCGGGGTTACGACTACA 1250893 29 100.0 32 ............................. CAATCTCGTCGTATGCGGGGGCGTCGGCGGCG 1250832 29 100.0 32 ............................. GCGAGGGTCGGCAAAAAGTCGCCCTCGCTCCG 1250771 29 100.0 32 ............................. GGCGGATCAGAAATCGAACAACCCCGTAGCCC 1250710 29 100.0 32 ............................. TAGCAGTTTTTCCGGGGAGTCACGAACGAGAG 1250649 29 100.0 32 ............................. AGCAGAAACACGCGATAATTGTTTTCTGCAAA 1250588 29 100.0 32 ............................. TATATGATTAAAGTAAGAGATTCTGATACTTA 1250527 29 100.0 32 ............................. AGGCCGCCGACGCGGGTCGGCCGCAGCTTCTT 1250466 29 100.0 32 ............................. GAGAATATCGGTGCAGAAAACGCATCGATTCG 1250405 29 100.0 32 ............................. GAGAATATCGGTGCAGAAAACGCATCGATTCG 1250344 29 100.0 32 ............................. TGATCGAACAGTCGAGTAGGCCGACCCCATCG 1250283 29 100.0 32 ............................. ATCGTGGAACTCCCCGGCACTGTCGAATTTCT 1250222 29 100.0 32 ............................. TCTCCTGACGCCGGGGCAAGAGTTACCAGGCT 1250161 29 100.0 32 ............................. GTGAGAGCACCCCCGACAACCCTTTTACTGGC 1250100 29 100.0 32 ............................. TGCGTTTGCCTCGGATCATCAACTCGCGATCA 1250039 29 100.0 32 ............................. CCCCCCTCGCCGCCTCTCTGCAGCAGAAACAG 1249978 29 100.0 32 ............................. ACCGGGTCTGCAGCTCCCTAGAGCACCGTGGA 1249917 29 89.7 0 .......................A...AA | C [1249891] ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.7 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : CGAGGCGTAACGCCCCGTCCTGGACAGGGACGACGAGCGACGGGCCGACAAGGGACGCCCGCACGTGCGAGCGGCCGTTGCCGTCTCCCCAGCGTGCGTCGTGGGCATAGGCGATGCCGGAGGGGGCGACGCGTTCGAGGGCGTCTGCAAGGTCGCGGAGGACGCCGTCTTCGTATTCGATGGTGGTGAGGGCGGCGGTCGACCCGATGAGAAAGAGGGTGCAGGCGCCGGTCACGGTGCCGCTTGCGGCGACGCACCGTCGCACCGCGAGGGTGAGGTCGACGATCTCTCCTTCGCCATGGGTGGTGACGGTGATCTCTTCCTGGTAGACCATGCGGTGTCCTCGGCGGGAGGGGGGAAAAGGGTGGCGGTGCCGGACCAGAATGTTCTTCGTGCCGGAGGAAAAATGTCGGGGTGAGGCGGGGGTTTTCTCTCGCCGGTCGTCGGGGACGGGGGATGTGTCGGAAGGAATAACCCTTCCGGGAATGATAAGGAGAAGA # Right flank : TCTTCTACACCCTCTCTCCCATCGGGGCGATCTCTTCCCCGCCACAAAAAAAGAAGATTAAATATCGTCATCCTCGGGACGGATGACCGCGAAACCGACGACCGTGTCGCCCTCGTCCATCTTCATGACCCGCACGCCGCGGGTGCCCCGCTTCTGGATGGAAATACCGGAGACCGACGTCCTCATCACGATCCCCGAGGCGCTCATCAGGATGATCTCGTCGCCGTCCGAGACCGCCTTCGCCGAGACGACGCCATCGCCATAGGGAGGCTGGATGTTCCGCACACCCATCGTGCCCCGGCCGTGGCCGCGGAACTCGTCGAACTCCGTCCTCTTGCCCATCCCCCTCCCGGTAACCGTGAGCAGGTGGTCGCGTGAGACCAGGCTCAAGGCCACCAGGTGGTCGCCCTCCCGCATCCTGATCCCGATGACACCCTGCGAGTTGCGGTGGAGCGGCCTGACCGCATCCTCCGCGAAGCGGAGACTCTGGCCCTTCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1418757-1421462 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNW01000001.1 Methanofollis ethanolicus strain JCM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1418757 37 100.0 36 ..................................... CAGGCGGTCGTCAAGTCGCTCCGTGTCAAGGCGGGG 1418830 37 100.0 35 ..................................... AAGTACGGGCAGAACCCCGCACAGATCTTCTGTGG 1418902 37 100.0 35 ..................................... ACCTCCTCGTCGGAGGTGTCGGGGCGCAGGCCGTC 1418974 37 100.0 33 ..................................... GACGCTATACGGGGGGGTTATGGTTCGCGCTCA 1419044 37 100.0 35 ..................................... GGTGCGAGCGTGACCGGACGACCGGAGCGATCACA 1419116 37 100.0 34 ..................................... CAGATCACAGTATCGGGGCCGATCACGAACCCAG 1419187 37 100.0 36 ..................................... CAGGATCTTGGCCGTGGTCACTGCATTGCTCGCGAG 1419260 37 100.0 36 ..................................... AGATTCCTCAGCCCCGCGACGGGAAAGCCCACCGGG 1419333 37 100.0 37 ..................................... ATCTCGTAGGTCGGCCAGGTGCCCGCCTGCGCGATTG 1419407 37 100.0 35 ..................................... TAGGTACCAATACATTGCATGGTTCTCAGTCCTGG 1419479 37 100.0 32 ..................................... TATATTCCCGCGCTCATGCACGCAGATGTAAG 1419548 37 100.0 35 ..................................... CCGGCAGAGTTCCCCTGCTCGGTGATAGAAGTCTA 1419620 37 100.0 36 ..................................... AGGCCGAGACCCCGGCGGGTGTCTGTGCGAAGGCGG 1419693 37 100.0 34 ..................................... TGCCGAAGAACGGATGTACATCCATATCAGTATT 1419764 37 100.0 37 ..................................... TTCCCGGCCTCGTCGGTCTCGTAGACGACGCGGTTGG 1419838 37 100.0 37 ..................................... GCATGCGCGCAGGTTCTACAGTTGACCTCTGGCAACC 1419912 37 100.0 35 ..................................... TGATCCCCGGTCGGGCCTTACCCTCCCGCTCAGTA 1419984 37 100.0 36 ..................................... GACATGGTGGACGCCGCCCCGATATGGGAAAAAGGT 1420057 37 100.0 37 ..................................... AGTATTGCGTAGACTCGCCCCTCGATTGCGAAGGTGA 1420131 37 100.0 36 ..................................... GTCGGCATGACGGTCCGGATCGACCCCGCGGTCCGG 1420204 37 100.0 35 ..................................... CACCCCCGCGGTCAGGGTGTACTGGTCAGAGGTGA 1420276 37 100.0 35 ..................................... ACAGTCTGGGAAGGGTTCGTGATCATGGTGGTGTG 1420348 37 100.0 36 ..................................... GCGAGCCTCGCCGAGGTAGACGTTACGCTTGCACTT 1420421 37 100.0 38 ..................................... TTTGTTCTCAGATACTTTGCAAATTCGGACCATACCAG 1420496 37 100.0 36 ..................................... GGAGTTCGCTGACCCCATCGAGAAGAGGGAGCCGAG 1420569 37 100.0 35 ..................................... ACGAGGGTCTCCTCGGCAACGCTCTCCGGGGTCGC 1420641 37 100.0 37 ..................................... TGTGCGGCATGCACGCCGCCGGAGCGAGTAGATCTGC 1420715 37 100.0 36 ..................................... TTTCGTCCAATCGTATGGTACTGGGACGTGGACCTT 1420788 37 100.0 34 ..................................... TCGTTAGGTGTATGGCAACGATTCTTGGAAAGAA 1420859 37 100.0 35 ..................................... GTATGGTGGGGGATACAACGCGCCGGTTGTGACTC 1420931 37 100.0 37 ..................................... ATTGAGAGTGATGTTGGCGATCCGCTCATGCTCCAGA 1421005 37 100.0 38 ..................................... ACGAGTCGGCCCGTAGCAGGGCAATACGCAATAGCCGC 1421080 37 100.0 34 ..................................... CTCCGATCCAACTCTGGACGTCGTGAAACGCATT 1421151 37 100.0 36 ..................................... GGCTACAAGGGGAATTGATCATGCAGATTGTTAGCG 1421224 37 100.0 34 ..................................... TATCACCTCGCCGAGGCCCTGACCAGTTTCATCT 1421295 37 100.0 37 ..................................... CCGCAGGAGGAAAGGAACCGGCAGATGTAGTAGCCGG 1421369 37 100.0 20 ..................................... GTGCTTTCGCTCCGTATTGA Deletion [1421426] 1421426 37 70.3 0 ...TT...A..CTCA....T..T..C.A......... | ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 99.2 35 GTCGCAGCTGAAAAGAAAACCCGATAGGGATTGAAAC # Left flank : ATCATGCAGGCGATCCTCCTCAGGAAAGCGATTACCGGAGAGATGAAAGTGTATCATCCCCTGGTGTTCATGAGGTGATGGGTGTGCGGCTGGTGGTGACCTATGATATTTCCAAGGATAAGGTTCGGAATCGGGTGTTCCGGATTCTTGAGGGGTATGGTGCGTGGAAGCAGTACAGCATCTTTGAACTTGAGGTCACTGACGTTCAGAGGGTTCAGATGGAGGAAAAGATCAGGTGTGTCATTGAACCTCATGACAGGGTACGGATCTATGAGTTGTGCGCCCGCTGTATCGGAAAGATAACGGATCTCGGGGAGCGGTCGCCGGAGTCGCTCTCCAATGTGGTGTAGCGAAAAGTTGATCGTGCGATGGGTCAATAGGTGTTCTGGTGTATCATGCCTGTTTATATGGGCAGGGTATGCTGTCACCCTATGACCTGATCGTCTCCTTTCTCTGCCATGCATTGCTTTGTTCGGCTTTTGCAGGCAAAATGGGGGGCG # Right flank : CCTCGAAAAATATCCGGGGTGTGGGAGTCTTCGGGGAGCACTGGAAGAGGAATGTGTTCTGGATCGTGAGGGCACTCTCTCCCTCCTCACTCCTCTTCCCCGAGCGCCGCCCTCATCATCTCATCAAACATCCCCGGCCCCCTCTCCCGGATCACCGCCACGCCCTTCTCCGTGATCCCGCCCGGCGTCGCCACGCGGGCGATCAGGCGGCCGACGTCACTCTCTTCGAGGAGACCTGCCGTCCCGATCAAGGTCTCCTTCACGAGGAGGTCGGCAAGGTCGGGCCGCACCCCGCCCTGCCGCACTGCCGCCCCCGCCAGTTCCTCCATCAGTGCGGCGATGAACGCCGGACCACAACTGGTGAGGAGGGTGAGGGCCTCGAAGTCCTCCTCTTCCACCTCAACTGCCCGGCCGATCGCGTTCAGGAGGGAGAGGACGGTCTCCCTGTCTGAAGGCGTCGCCCGGTCGCCGAAGGCCACCAGGGAGGCCCCCTTCAGCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTGAAAAGAAAACCCGATAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1444071-1439513 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNW01000001.1 Methanofollis ethanolicus strain JCM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1444070 32 100.0 35 ................................ TCGTCGATACAACGGTCCGGTTCTGGAACTGGATC 1444003 32 100.0 35 ................................ TGACGGAGACGGGCTTTTCGCCCCGATGCTGAACG 1443936 32 100.0 34 ................................ TGACGAGATGGAAATCGAATCCGCAGCATCCAGA 1443870 32 100.0 35 ................................ CAGTGCTCTGCGGCCCGCATCGGGGAGCGAGCCCT 1443803 32 100.0 34 ................................ CAGATCTTTGAGACTGCCATCAGCGCCACCCCGC 1443737 32 100.0 34 ................................ TCACATGCCCCATTCCCAATCGTCTTTCTGGACC 1443671 32 100.0 34 ................................ GGACTGATGACAGCAGAACCGACCGGGATCTCGG 1443605 32 100.0 34 ................................ CGTCTGTATCCGTCATTTTTTAGGCGACCTCCTC 1443539 32 100.0 35 ................................ TACAGGGGGGCGCTCGAAGGCAAGGTATTTAACAT 1443472 32 100.0 34 ................................ TGAGACTATAGTCTCTGCGGCTTGCATCGCGGGG 1443406 32 100.0 36 ................................ ATGCGGAAAATCGAGAACATGCTCGAAATCCGCAGG 1443338 32 100.0 36 ................................ GGGCGTGGCGGCAGAAGAGGCATTCGGATTTTTGGT 1443270 32 100.0 34 ................................ CGTGTCCACAGCACGCCGATGACACCCCTGGAAG 1443204 32 100.0 35 ................................ TAGACTGGCCCGACTCTGCAGTGTGGGACTATATC 1443137 32 100.0 34 ................................ ATGAAATCCTCGTAAATGCCGCGAGGAATGCCAG 1443071 32 100.0 38 ................................ CCCGGGAGAGGATCAACTGTTTCGTCGGTCATCCGCCC 1443001 32 100.0 35 ................................ TACCGCGCGCCGGGTGCGGGCCGCGTACTCTGGCC 1442934 32 100.0 36 ................................ CGTAACCTTCAGATCAACGCCCTCTCTACCGACAGT 1442866 32 100.0 35 ................................ TTGCCCCTCTCGCAGCGGTCACATGTCACCCCCCG 1442799 32 100.0 35 ................................ GTCAAGGAGGGCCTTGTCGGCCCTGTTGATCCGTA 1442732 32 100.0 33 ................................ AATTCAAGCGCGGCTCGACGTTGCCTGTCTACC 1442667 32 100.0 34 ................................ TTCTCGCAGTCAATGATCGACACGACGACGATGT 1442601 32 100.0 35 ................................ TGGGGCATGGATCTGCAGATCACGGTCCTCGAAGA 1442534 32 100.0 35 ................................ GGGATCGAGATAAGGTTCACCGCTGGGGCGGCCTC 1442467 32 100.0 34 ................................ CTGCATGGCCTCCAGATTCGTCACCTTCGCCCGG 1442401 32 100.0 36 ................................ ACTCGCTCACAGCGGGATGATGTGAGGGACCGGATC 1442333 32 100.0 35 ................................ ATGAGCCCGGTACACTCGGTACACTTTCCCCCTAT 1442266 32 100.0 34 ................................ CTCTCTGCTTCCTCGGCTTGCTCGCATTCTGGAT 1442200 32 100.0 34 ................................ AAGGGCGTAATCTGCGTTGAAGACCCCCTTCAGG 1442134 32 100.0 35 ................................ TTCAGGTTGGTGTAGTACCCCTCGGTGGATACGAG 1442067 32 100.0 35 ................................ CTCGGTGGTGCCGAGAGCCTCGCAGCGGTGCAGGA 1442000 32 100.0 33 ................................ CGAACGGGAACCGTGCGCGCGCCCTGGCACTGA 1441935 32 100.0 35 ................................ AGAGGAGCGGACATGCCAGAAAAGATAAAATCGAT 1441868 32 100.0 35 ................................ CGAAATGAAGAAGACTGCCGAAAAAGTGGGACTTT 1441801 32 100.0 35 ................................ ACTTAAACATCCTACTGGCAGAGACGTTACTGCAG 1441734 32 100.0 33 ................................ AAACGAGATCCATGTTAATGGTGCGCCAGGCAA 1441669 32 100.0 36 ................................ CGAGCAGAGTACCATGCCACATTGGCGGCGGGGGCC 1441601 32 100.0 33 ................................ TTCAATGTCGATCATAGCGCCAACGGTCATGCG 1441536 32 100.0 35 ................................ AGAGAGGGATCTCCGATTGCACGGTTATACAGCCG 1441469 32 100.0 34 ................................ ATTTATTCTGCCTCGCTAATTAATCTCAGATTAT 1441403 32 100.0 35 ................................ CTGTCGGTCGAGAAACAGAACCTCCCGTCCCTGTG 1441336 32 100.0 33 ................................ TTAGAAGACGCGAGCCTTAATCTCGTCTGGGGC 1441271 32 100.0 34 ................................ TGTCGAGCCAGCGGTCACACCAGGCATACACGAC 1441205 32 100.0 35 ................................ TTATTATCGACCCAGTTACAAATACCGCTGAGACC 1441138 32 100.0 35 ................................ GAGTAATCTCGGCTCGCGGGTGGTGTGCTCATTTA 1441071 32 100.0 33 ................................ TTCAGGCACAGCGTTACCGAACCCAAACGGCGA 1441006 32 100.0 34 ................................ ATCCGAATGCTTTTCAGGATGATTCTCTCAGATC 1440940 32 100.0 34 ................................ CACAAAAAGAACAAAGAATGGGTTAAACAACACC 1440874 32 100.0 33 ................................ CAGTTTAAGCAGCGGGCGATAGTAGATATCCTC 1440809 32 100.0 36 ................................ TCGCAGTATCCTGGGGTAGGAGATATTCAGAACGAA 1440741 32 100.0 35 ................................ GCTTTAATCCACGCCGCGGCTTCTGCGTTACTCAT 1440674 32 100.0 34 ................................ CTGGATTCGACTCGTATACTCTGCACCTGTACAA 1440608 32 100.0 36 ................................ TCGGTGAGCGCGCGCGCGACCTCATGATCATACCTC 1440540 32 100.0 35 ................................ AACTCGCTTGCCAGACAGACCCAAAATCTTAGGGT 1440473 32 100.0 34 ................................ TGACAGGAAACCTAGAGGAGCATAGACTGGTAAA 1440407 32 100.0 35 ................................ TAATGGCTAACCTCCGCGTTCAGAAGGACCAAATG 1440340 32 100.0 34 ................................ GAGTTTCCGCAGGCCCCAAAACACGAAGCGCAGG 1440274 32 100.0 36 ................................ TTAGAAGACGCGAGCCTTAATCTCGTCTGGGGCACG 1440206 32 100.0 35 ................................ TAATCATCGACCCAGTAACAAACACGGCCGAGACC 1440139 32 100.0 34 ................................ CTGTAAATTTAACCGCACTCAAATTCCCAGATAC 1440073 32 100.0 34 ................................ AGGGCGTTGGGTGGAGGGAGCGGAGATGAAGACA 1440007 32 100.0 34 ................................ TCCTCGGGGCACCAGGCCCCGCCCCGGTTCCCCG 1439941 32 96.9 34 ...A............................ CACCCCTCTACAGGGATGGCGATCGTAGTTTTGT 1439875 32 100.0 36 ................................ GAGCGAGGCTGCGGTGTAGGTCGGGTCTGTCGAGAC 1439807 32 100.0 36 ................................ ACCGCGTCCAAGGGGAGAAGCACGTCGGCCGCCGCC 1439739 32 96.9 34 ............G................... ACCGCATCCGCCGCCGTTGCGAAAGGGGCGGTGA 1439673 32 96.9 33 ............G................... AGTAGTCCCATCAGGGATTTGGTGTGCATCATG 1439608 32 96.9 32 ............G................... CAGCCCCGGATACTTACGGGTCGTTCGTGATC 1439544 31 81.2 0 ................-.AT.....C.T...T | A [1439518] ========== ====== ====== ====== ================================ ====================================== ================== 69 32 99.5 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : AAGACTGAGAAAGGTGGCAAAGGAGTGTGTCAATTATGGACAGAGGGTACAAAATTCCGTATTTGAATGCCTTCTGGATCCTGCACAGTTTGCGAAACTGAAACATTCGTTGTGCGCCATCATAGACGATGAGAAGGATAGTCTCAGGTTCTATTATCTGGGAAAGAACTGGCAACACAGGGTCGAGCACTTCGGTGCGAAAGAGGGGTATGATCCGGAAGGATTATTAGTTGCATAACCTTTGCGAACCTGAAGTGATCATCTTTTCCCGGAGGCTTCGCAGGAGAAATGAATCGGTTATATATATGATTTTACCCCTGGGCCGGCAGGATAGGCATACCAAAAAAGAAATGAGAAGTTGTCTTCAAGATATGTTCTAATATATATTTTGTTCTTATATTGTTTAACTTATTCGCGATCTGCGAATTGGGGTTATGTATCTGGCGAATCCTATGCACATCTATTTATTGCGGGCATGACATTGATCTAGAGTGTTTGCG # Right flank : AAACGACCCTGCCCCAAAGCCCCAACCCCGCAACCCTTATGCCCCTCCGCGGGCAACCTCGTCCCTCATGCAACTCCGCGACTTCGCCCTCGAACGCTTTTTCGCACAGCACGAGTTCACCGCCCCCCACCTCCTCTGCACATCCGACTGCGAGTCGGTGAGCGTCGCCGACCTCCTCGCCCACGAGGAGGGGGCCGTGGAGAGGTTCATGGACCTCCGCCTCAACTACACCGAGGCGCCGGGCGGCATCGAACTGCGGCAGGAGATCGCGGGCCTCTACGCCTCGGCCGGAACCGACAACATCCTCGTCTCCGCCGGGGCCGAGGAGGCGATCTTCCTCTGCATGAACGCCATGCTCTCGCCCGGCGACGAGGTGATCGTCCCCTGTCCGGCCTACCAGTCCCTCCACGAGGTGGCGCGGGGCGCCGGCGCTCGTGTCGTCCCCTGGATGATGCACGACGACGACGGCTGGAGGCCGGACATCGAGGCCCTCAAGGAGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1452232-1452655 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNW01000001.1 Methanofollis ethanolicus strain JCM 15103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1452232 32 81.2 35 ...A...T.G...G.....T...........T AGCCAGAGGCAGATTAAAACGATCACCGCATTGAC A [1452244] 1452300 32 78.1 30 ...A..T......T..A..T...A.......G CAGGGCCGTGCGACTGAGTGCGGAAAGACC 1452362 32 100.0 34 ................................ TAAGATCGGCCCCCTCCGGTCTGGACGATGATCT 1452428 32 100.0 33 ................................ GTGAAGGGCGATTGGCAGATCACCGCGAAGACC 1452493 32 100.0 34 ................................ ATCTGCGAAAACAGGTCCTCAACGCCCTGGCTGA 1452559 32 96.9 33 ...................T............ CCCGATGCGCATGCCCGAGGAGGCCATGAGGAG 1452624 32 90.6 0 ...............T..A............T | ========== ====== ====== ====== ================================ =================================== ================== 7 32 92.4 33 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : CAGACCCCCATGATGCCCCGAGATGATATACTCTAAAATTCGGCTCTGGGCAGGGTGATAGAGTGTTCGTGCCTCTTTTGCACCGGCAGTGGAGTGATCGACTCGTATATTGGCACCTTCAAGGCGCTTCTGAAAGTCAGATGAATATTTCCCGAGATCATGCAGCAAACCTCCGGCATATGCGTATTCCGCGGCATTGAAGTCACGGGCAAAGTCAGATGCAAGGTTCGCTACGTTTTTCAGGTGATCCTCCAGACTCTGCCAGTCTGTTTTATCCGGGTTCTCTGTTGAATGGGCGTAATATGTCATAGGGGCAACTCATATGACCTGCAATATACATCACGAAAATATTTTCTCATTGATCCCGGTAAAAAAGCGTGTGTGGTCAGGAAACGAAACCTCAGGCATCATGACCTGAAGGCCTATGTGATCCATACGGTTCTCAGGATAGATGATGGTTAGATACGGGTGATAGCATGGCGCAGGGGTTGATGTACGAT # Right flank : TCCGTACCTGATACGACCTTACCTGGATAATGGAGTCACACCTTCACAGGGGTGTGGACGAAATCACTGTCGGTCATCTCTTTAGGGGAGTGCCAGCGAGGGTATCAGGAGGGTGATCACTGGATTTTACTATTTCTCACCTGTATTGGTGCCTCAATTCTGTTCCTTCTAATCACATCACCGACTCCCGGTGTTGCCTGAGCACATTGCATGCAGGGAATATTATATATCCTCTTGATATCTTCACCATGGACTCTCATATCGGTACCGGGCCGCCCGGACCGAAAGCCCGCGACGCTGCCGGGATCGATACCGGCCCTGCCATCCCCGACGCGGCGATGGAGGGCCTCTGAGAGGTGAAGATGATGAAACAGAAGATTACCTATGTATCCCTTGAATCGGACGAGAGCATGCACCAGTTCTATGAGGCAGCGCTCGCAGAGATCGAACGCACCCTCGGCCACCGCCACCCGCTCTATATCGGGGGCAAGGAGTTCGCC # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2300491-2292266 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNW01000001.1 Methanofollis ethanolicus strain JCM 15103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================ ================== 2300490 29 100.0 32 ............................. GCGGGACCGTGCCATCACCCAGCTCGAGAAAG 2300429 29 100.0 32 ............................. CCTGGAAATGCTCAATACACATAACCTGGTCC 2300368 29 100.0 32 ............................. ACCTGGGGAGGTCTTGCGATCCGCCCGGGCGA 2300307 29 100.0 32 ............................. ATCATCATCGTCCCTTAACAGGTTGTAGAGCG 2300246 29 100.0 32 ............................. CGCTGCCCAGGCTGAGCCGTTCCAGCCCTCAA 2300185 29 100.0 32 ............................. ATCGGCGACGGAGTTACCGCGTGGAACGCACT 2300124 29 100.0 32 ............................. GGAGTGGCGTACCAGAAGGCCGTCGCTCAGGA 2300063 29 96.6 32 ............................T CCAGAGTCTGGATCGGGACACATTCCAACCCC 2300002 29 100.0 32 ............................. ACGCGTTACCCCGCGCCGGGGTAGTCGCAGCC 2299941 29 100.0 32 ............................. ATCCGTCAGTCCCGCAACGAGACCCGCCAGAA 2299880 29 100.0 32 ............................. GCGTGCGTCGCACCCTGCGCGCCCGTCCGAAC 2299819 29 100.0 32 ............................. AGATCCACCGGGCAAAGGGCCGTGGCGTCCGA 2299758 29 100.0 32 ............................. GTTAGTGCTGTCCAGGTTGCAGCGCTGTATAA 2299697 29 100.0 32 ............................. TGAGTCTGAGTCTGGGGCCGGAACATGTTGCC 2299636 29 96.6 32 ............................A CGGTCCGAGAAACTCCTTTTGCATCCATTCTA 2299575 29 100.0 32 ............................. CATCCGAAACACACCAGAGAGAACCAGCATCG 2299514 29 100.0 32 ............................. ATCACGAGGGCTTCGACGCCGAGGGGGTTGTG 2299453 29 100.0 32 ............................. CACGATAGCGGTTTACCCCCCTCGCAGCAGAC 2299392 29 100.0 32 ............................. TGACGAGGCAGAGCCTGCTTCTTCCGGAGGGC 2299331 29 100.0 32 ............................. ACTATCCGCAGCGTGCACAGGCAATCGAGAGG 2299270 29 100.0 32 ............................. AAAAGACCCATGGTAAGACGACAAGACGGGAG 2299209 29 100.0 32 ............................. GCGAAAGACGGCCTGTTCATCTTGAAGGAGGC 2299148 29 96.6 32 ............................T GCATACGCGGTCTCGCCATCGACCCTGCAGAG 2299087 29 100.0 32 ............................. TAGAGAAAACAGGCTACCGGAACGAATACAAC 2299026 29 100.0 32 ............................. AATTCAACCGACGGAGTGAAGGTGTGTTCAAA 2298965 29 100.0 32 ............................. GCGTTCATGATTGCATCGGCCGACTCTTCCGA 2298904 29 100.0 32 ............................. AGATGCATCCACCCGGTGCCTGAAAACCCTGT 2298843 29 100.0 32 ............................. GTTGAATCGAAACTTCAGAACCGATATCTGAA 2298782 29 100.0 32 ............................. TCAGAGTAGTGTCCCTGCAGGGCGATCGAGGT 2298721 29 100.0 32 ............................. ACGCTATTGTTTCCTCATTTAACCTCTCTGAG 2298660 29 100.0 32 ............................. GCGGTTAAAACGTTTAGGCAGTTTCAGGAAAA 2298599 29 100.0 32 ............................. ACTGCCAAGTCAAAAATCAGACTGCACGGCAA 2298538 29 100.0 32 ............................. TTAGCATGTCCCAATTCTTTTCACGGTGGTAT 2298477 29 100.0 32 ............................. TATTCGACTGTTACAACGAACTTGTGGGGGCA 2298416 29 100.0 32 ............................. TACCCCGCCAACGTCCTTGATGTTCACCGATT 2298355 29 96.6 32 ............................A CGACCGCACCATCTGAGGCCCAGAACTCGGTC 2298294 29 100.0 32 ............................. GACATTGATGGGGGAACACTGTGACGCAGATA 2298233 29 100.0 32 ............................. GAGATACGATATCTGGAGAACGCCGTTTAGCA 2298172 29 100.0 32 ............................. GCCGAGTCCGGCATTGGGGCAATGGGCATCGG 2298111 29 100.0 32 ............................. ACAGTTCTGGTTTTTTAGATAGCCTCCGGCTC 2298050 29 100.0 32 ............................. GCCTGGGCACGACAAGGCGATATTTACGGCCC 2297989 29 100.0 32 ............................. ATCGGCGACGGAGTTACCGCGTGGAACGCACT 2297928 29 100.0 32 ............................. AGACTTTCTGAGGTCATTGATGACCTGTATGA 2297867 29 100.0 32 ............................. ATTCCCTCCTCTTTTTCTGGGGATGGATCTGA 2297806 29 100.0 32 ............................. GTCCCGGGAGGATGCACTCACAGTCATGAGGT 2297745 29 100.0 32 ............................. AGGATATCCGGATTCGTGCGGCTCAACGACCC 2297684 29 100.0 32 ............................. TGGTGGCGCACGCCATGGGGCACTGGAAGGTG 2297623 29 96.6 32 ............................T GTGTCAAAAAACCATCGTGTCCGTTGGTAGGG 2297562 29 100.0 33 ............................. AGTACAAATCCGCTTTAACCTCTGAGATAGAAA 2297500 29 100.0 32 ............................. TCCGAGGCACGCATCGTGCCCCTCAGGGGTCG 2297439 29 100.0 32 ............................. GGCGCGTCCACGCCAGAGACGATATACGATAA 2297378 29 100.0 32 ............................. CGTTGCGATATTTCCGGCGTCGAGATTTGCAA 2297317 29 96.6 32 ............................T CGACCAGGAGCCGAGAGGCCCGGAAACCCTGC 2297256 29 100.0 32 ............................. ACATGGACGATCTGATCGACGAGATCCAGGGA 2297195 29 100.0 32 ............................. AACGACGAGATTGTGTTCAGGGCGTTGGGTGG 2297134 29 100.0 32 ............................. TAATCGCCTCGTTTTCCATCGACGATCCCACA 2297073 29 100.0 32 ............................. TCCTGAGCCTGAGGGTAGAACGCTGCGGTCTT 2297012 29 100.0 32 ............................. GTGCAGATAGGCGACCAGACGCTAACGGTAGG 2296951 29 100.0 32 ............................. TTGGTGGGTGTGGGCGAGTCGGGCGGCTGAAC 2296890 29 100.0 32 ............................. AGTCTCCTTATCCGTCACGCGTTGTGGAGCCG 2296829 29 100.0 32 ............................. TTTTCGGCTGCAAAACTCGGTAAAACAGATTT 2296768 29 100.0 32 ............................. AACCGGAAACAGCCCTTTATACGTCAGAGCAA 2296707 29 100.0 32 ............................. ATTTACCGTTGGATTTAGCGTAAATTACAGGA 2296646 29 100.0 32 ............................. GACTTCACGGCGCCCGTCGTCTCTACCCTGAG 2296585 29 100.0 32 ............................. GGCAATCTCTGCCTCTTGCAGCATCTCTTCTA 2296524 29 100.0 32 ............................. GCGTGCGCCACCACATCGATTTTCTCGGTGTC 2296463 29 100.0 32 ............................. GCGGAGACATACGTAAGACTGCCGCCGGTGTC 2296402 29 100.0 32 ............................. AGAACGCAAGAACGGAAGGACTTACTCCACTG 2296341 29 100.0 32 ............................. CAATCATCCCGTTTCTGTTTTTCGAGGTCAAT 2296280 29 100.0 32 ............................. GCGTTTGGAATTGAGGAAAAAGAAGAAGAAGA 2296219 29 100.0 32 ............................. GGTAGACGGGGCCGAGGGAGGGGCGCGGGCAA 2296158 29 100.0 32 ............................. CCGGGGGTGCCTGAATGCAAGTGTTGTCGGGT 2296097 29 100.0 32 ............................. GTCCTCCAGGGCGACCGGGCCGGGAGCGCACC 2296036 29 100.0 32 ............................. ATGACCTCCGCTGCCGGGTCTGTTATTTCCGG 2295975 29 100.0 32 ............................. GATACACGCACCGTCATTTCCATTCCTTTCAT 2295914 29 100.0 32 ............................. ATTCGGCCGACGACATGGTCGACAGGTCGATG 2295853 29 100.0 32 ............................. GACACGTTCTTCTTCTTCTTTTTCCTCAATTC 2295792 29 100.0 32 ............................. AGAGAGGTGAGCGACGATGTCGAGTAACTCAT 2295731 29 100.0 32 ............................. ATTACGCCGGAAATAAATACGATTGGGATAAT 2295670 29 100.0 32 ............................. GAACAGAGGCATTTTCAACAGCGCTTGCAGAT 2295609 29 100.0 32 ............................. AATTGAGACGGCCATTTACAGCAATGAAAAAC 2295548 29 100.0 32 ............................. ATTTAATTCTCTTTTTTACCCGCACCAAGAGA 2295487 29 100.0 32 ............................. CACCGGGGTCTTGAAGGCGCTTGCATACCTGC 2295426 29 100.0 32 ............................. CCCCTCCCCCTGCGCACGCGTGTGCGGATCCT 2295365 29 100.0 32 ............................. CTCTCGTAGTTCCCGAGGTTCACCGACCCGCC 2295304 29 100.0 32 ............................. GTCCTCGATATCTGCCCGGCTGTTTTCGAGGA 2295243 29 100.0 32 ............................. GCCCGGCTCTGGTCATCGATGTCTTCGGGCAT 2295182 29 100.0 32 ............................. TGATCATCCCCTCTTCTGATCCTGCAGCCGTG 2295121 29 100.0 32 ............................. GTCGAGCACCGGTTCGAGCAGATCGATATCGA 2295060 29 100.0 32 ............................. GATCAGTACTCGACCCTGCACACGGCGGTCTG 2294999 29 100.0 32 ............................. GTCCGGCTCTTCCCGGGCCGGGCCCCCGGAGC 2294938 29 100.0 32 ............................. GTACCGAAAACAGAGGGAGAGGGCGACAAGCC 2294877 29 100.0 32 ............................. CCTCGCCTGTGCCTTCTCGGCGTCGGTGGCCG 2294816 29 100.0 32 ............................. TATGCCAACGGCTACCGGATCGAGGGACCTGA 2294755 29 100.0 32 ............................. TCGCCCGGGACACCAAGACCGCCGAAGCCACC 2294694 29 100.0 32 ............................. AGAGGGGATCAGGTGTGCGCCACTGCCACTGA 2294633 29 100.0 33 ............................. TTTTTTCCAGACCTCCCCGGGCTCCTTCACGAA 2294571 29 100.0 32 ............................. GCCCGCTGGAATGTCGAGTGGTCCCTGAAGGG 2294510 29 100.0 32 ............................. ATAGTTAGAGGGTTAGTTCGTCGACGACCTGC 2294449 29 100.0 32 ............................. AGAAGGGGGAGGTGCACCACGTCGGCGCATTC 2294388 29 100.0 32 ............................. AGACCGGCCGGACCCTGCGGGAGTGGCTGGAG 2294327 29 96.6 32 ............................T CGTGGCGATCAGGTGGCACCGGCACTGGAGCA 2294266 29 100.0 32 ............................. GGACGAGGGGGTAGAGGCAGAGGACGACACTA 2294205 29 96.6 32 ............................C AGCGACCCCCTCTATCGGTTCATCATGGAGAA 2294144 29 100.0 32 ............................. AGGACCTGCACCCGGACCTGATCGCCGCCGAA 2294083 29 100.0 32 ............................. GAAGCGGCGATCATCGCCCACACCCGCACACA 2294022 29 100.0 32 ............................. GTCCCGGACGTACGCGTCGCTCCAGCGGCAGA 2293961 29 100.0 32 ............................. GTCGTCAACGCCCGCGAACTCCTCCTCAGTGA 2293900 29 100.0 32 ............................. AGAAGAACTGGCTCGCTAAGGCTCCCACCTTA 2293839 29 100.0 32 ............................. ATCGTATGCCGGGTCCGCGATCTGGTCGAGGT 2293778 29 100.0 32 ............................. TTCCCCTTGACGGTGAACTCGCCCCCGTCCAG 2293717 29 100.0 32 ............................. CCCCGGAGCGCGGTCAGGTTGCGGACCTTGAG 2293656 29 100.0 32 ............................. TATACCCCCCCATTCCCTTTGTGCTGGGTGTG 2293595 29 100.0 32 ............................. AGGGGTGTGGTGGAAATATCTGGAGGTCGATG 2293534 29 100.0 32 ............................. ACGATAGTGATTTTTCCAGACCACCGCATTAA 2293473 29 100.0 32 ............................. TTGTAGCACCTAGATGCGCCACCCAGCTATTC 2293412 29 100.0 32 ............................. TTGTCCATGATTCTCAGGAAAGAAATTCCTGG 2293351 29 96.6 32 ............................C AGAACGACATTCTTCTCAATGACGAAGCGGTC 2293290 29 96.6 32 ............................C AGAACGACATTCTTCTCAATGACGAAGCGGTC 2293229 29 100.0 32 ............................. GGTATCCTCCCTATGGGGCTGACGGTCGGCAC 2293168 29 100.0 33 ............................. ATGACGCCTCGGGGGAGTCCCCGGGGATCGGGG 2293106 29 100.0 32 ............................. AGCAGTTCATCGTCCTTCTTCACGCAGAACGT 2293045 29 100.0 32 ............................. GCCAGGATCACCAGGAGGGGGAGGACCGGGAG 2292984 29 100.0 32 ............................. TTGCATTTCTCTCCGTGCATCGCCTTCGCGCT 2292923 29 100.0 32 ............................. CAGCCGCTTCGCCAGCGCCCGCAAATGCCGAG 2292862 29 100.0 32 ............................. CTGAGCGCACGGATCAGGAGTTGCCGCGCTGC 2292801 29 100.0 32 ............................. ATGCACCGGGAGAACAGCCATGGACGGACGGC 2292740 29 100.0 32 ............................. ATGGATCAGCTTGCGGGGGCGCATCACCGCGA 2292679 29 100.0 32 ............................. CACCATAGACGCATTCTGAGATTACTTGGTGA 2292618 29 100.0 32 ............................. GCGTCTATGGAGTGGGCGGTGATAGCGCCAAT 2292557 29 96.6 112 ............................A CTGCGCTGCCGGAAATCCATCACATCCACCATAGAACACACCTCTCTCCACTCAGGAAATATCATAAAATACCATAACCAACATGATATCGTCTGCTCTGTTCGGGTGGATG 2292416 29 69.0 32 A........GA.AT.TC....T......C TGGTGCGATTACAGACAATTCATGTGACAGAA 2292355 28 86.2 33 A......................C.-.G. ATCAGGACGCCGATCGTCTGCGTCCTCGGGCAA 2292294 29 86.2 0 A......................C.C..T | ========== ====== ====== ====== ============================= ================================================================================================================ ================== 134 29 99.3 33 GTGTTCCCCACTCGCGTGGGGATGAACCG # Left flank : TGCTGGATGCGGGAGGACTGGATGTGCCGGAGCCGCCTGAGGGGAGTCTGCCTCCGGCGATTCCCGAGGAGGACATATGGGGTCCCTGATGGTCGTTGCAACCGAGAATATCCCTCCCAGACTCCGTGGGAGGCTGGCCCTCTGGCTGATCGAGGTGCGCTCAGGGATCTATGTGGGCAATTATTCGGTGAAGGTGCGGGAGATGATCTGGGAGCAGGTGACGGCAGGCATCGAGGAAGGGAATGCGGTGATGGTCTGGAGCGATCCGGGGGATGCGGGCTATGACTTCAGGACGATCGGGCAGAACCGCCGTATTCCCAGGGATATGGACGGCGTAAGATTGATTTCCTTCCTGCCCGATACCTCATGATGATGGATGCCGATCTCTTTTCTGCTCCCTCTCCCGCTATCTGGCCGGGGGCGCTCGCAGCACGAGGGTGCGGGGCCGCACCCGGCAAAGCATAGAAAGAACTTTCCTTCTCGGGATGATAAATGAAAGA # Right flank : CCCTTTTTCACTTCGCCCGCCTCCGCCAGAGCAAAAAAACACCGGGCACATGCCCGTGCATCCTCCCGCGCCCGGTGCGCCCCGTCATAGGGACGCCCAAAGAGAACCTGGTGAAGTTCGGATAAGGTCGGCCACTTGTACCCCCCCTGCCGCCTGATACCGCAGTACCTGGCAGACCCCACCATCGTACACCAGCCGCGGAGCGGTTCAAGCGGGTCGGCACACCCCGCCCGTTCGCACTCTTCGGCAACGACCCTGCGATCATAGGCAAGGTTGTGAGCAACAACCCAATCCGACCTTTTGGCCGCCTGTGCAAGGTTTATCAACGCATCCCTGATCCGGATGCCATCCCGGCGTGCATCCACCGTTGTGATGCCGTGGATTTTCACCGCAGAGGGGGGAATCGAGAAGCCCTCCGGGACGACGGTCATCGCATGCTCTGCCAGAAGGAACCCCTGGCTGTCGCAGAGCACCCATGCAAGTTCGACAAGACGGGGAGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACTCGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //