Array 1 280-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000020.1 Methanosarcina spelaei strain MC-15 contig_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 279 37 100.0 35 ..................................... CTATTTCAAAAGTTGCTACACGGAGATGATAAAAT 207 37 100.0 37 ..................................... GGAGGTAAAATAACATGGTGATACAGAGAAAAGGATT 133 37 100.0 36 ..................................... CCAATTCAGCTTTTTTCAGAGAATGCCGAATCATTA 60 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGGAGAGCGACGTCTTCATTGCTTCAAAACAATACAATATAAAAGGAATAGTTGATGAGGTACTTTTTCTTGAAGACGGTACTGCTGCTCCTCTTGAGTACAAATTCGCTGAGTATAAAGACAAGATTTTTAAAACCTATAAGTTTCAACTGGTCTTGCAGGCTCTTTTGATCCGGGAAAATTACAATATTGAAGCAAACCGTGCTTACATCTGTTTTACCCGCAGTAACAGTCTTGTCAAAGAAATGGAAATTACTACTTCTGATTTCAAAAAGGCTGAGAAAATTATTGAGGAAATAATCGATATTGTTCAAAAAGGTTTATATCCCAAAACTACTAAATCTTCTAGGAAATGCGTAGATTGCTGTTACCGAAATATCTGCGTATGAGAATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTTGCCCCAAAAAAGGGCTCATTTCAGAGCTTTTCTGGGCAAATAGCGGAAATTTTTGCCCT # Right flank : CTTATTATAAGGCAACAAAGAGCA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 280-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000194.1 Methanosarcina spelaei strain MC-15 contig_273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 279 37 100.0 34 ..................................... CCCTGATAATCATAGCAGTAATGTAAAACAGAAT 208 37 100.0 36 ..................................... CAGTAAATGTACCCATCAGTACCAGTAGTTTTGAAG 135 37 100.0 36 ..................................... TTGATGAGATATCAAAGTCTGCGTTAATCATAAAGG 62 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TATTACCTACCAGTAGTGTTTTCAGTAATTTCAACCCAGTTAAATAACACTTTACTAAGAAAACATAACAATATTGCAATACATTCTTTGTAAAAAATAAGATAAACAAGACTAATCTCGTTTTGTTATAAATACATTTCTAAATATATGTAACATCAATATAGTAAATTTATAAAATTAAATAATACAAAATAATATTTTTATTCGTTTGTTAATTCTGGATTGAATTCAACTTCTTGATAAGAAAACTGTTTGAATTCAATGTTTTAAAAACAGCAAAAATATTATTGAACTAGTCCAGCCCTTAGATTTATTTAAAACGACTTGAAATACAAAAATTAAATAGAAAGAAAAACATATACCAAGATGTTTCCAAACTGCTAGAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAACAAGAATTCGGACCCAAAAAAAGAACTCATTTCAGGCCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : CGAGAAGACATTAACAGCTATAATAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 28-213 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000273.1 Methanosarcina spelaei strain MC-15 contig_344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 100.0 38 ..................................... TTCCCCAACCTGTTTAAATACTACTTGTCCTTTTATTT 103 37 100.0 37 ..................................... GATCATATAGTAGTATTGTAGCAAGGAGGAAAACAAA 177 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATCGACAGACTCCTGTCTCTTTTTCAAA # Right flank : CACGACCTTGATAAACCCGATACTTAGTACTTATAGTATAAACAAACATTGTTGTGAGATATTTATATGAACTTATCAGGTGAATTCCCTATATTGGAGTTTGACCCTAACAAACAGGCTTTCATTGAGCCGTGTAAACTGATCAAGCCAATTGATATAGCAGCACGGTGCATTATCTGCTTTTTTAAAGAAGTAGTTGACAGGCTGGCCAATGATGGTAAACTTAGGGGTATCGCAGAACTAAGATGTGAATGTGGAATCATTCCTATCTATGAGATGGAATTACAGGAAGAAAAAATTGCAATCTTTAATCCGTTAATTGGTGCTCCTTCTGCTGCAGCTTTACTGGAGGAAGTAATAGCCCTTGGATGCAGCAAGTTTATAGCATGCGGTGGTGCAAGGTGTCCTTAAGAAGGACCTTGTAGTAGGGCACTTAATAATTCCGGTTTCAGCCATAAGAGATGAGGGAACTTCATATCATTATCTCCCCCCCGCAAGGG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 275-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000289.1 Methanosarcina spelaei strain MC-15 contig_359, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 274 37 100.0 34 ..................................... TTATGTTGTTATAGGTAACAAAAACTTTTGAGCT 203 37 100.0 36 ..................................... GAAAAGCAGTAAGTAGAAAGGAGTTTGACTGATTTT 130 37 100.0 33 ..................................... TTGTGACTGGAGTGAAGGGAGAGCGATACCCTG 60 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AATTTTAATGAAATCAGTTTTGAAAACGCTGAGAGAGCATAAAAAATTACATATAAGTAAAGAGGAACTTGCTGATACTCTCAAAAATAGTAATTTAGAGAGCAGTAGTAACTTTGGGACAATATTATTGTCCAGAAATTAATTGTCGCGATATCCTTATGATTTTACCTAAATTTTTACCGTCTATTTTGTTTCTCGGTGCCTTAGTTATAATTTGTGGACTTCAAGCGCGTTTTTAGAAATTGTCTCAATTATTTCCTCAGACTTCAAAGAAGCCGATAATATAATACAGAAAATGCTCGATGTTGTTTAAAAAGACTTATATCCCAAAACATACAGATCTTCTATGAAATATGTAGATAGCCTTACTGGAGTATCTGCATATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCTCCAAAAAAGGGCTCATTTCAGACCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CATATTCAGAAGTCATAAACAGAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 26-718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000353.1 Methanosarcina spelaei strain MC-15 contig_416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26 37 100.0 35 ..................................... TCAAACACGTTTACGGAGTCCACATATATGCCCCC 98 37 100.0 37 ..................................... AAGAGAACAAAAACGAAATCGATAGAGTGAAAGAAGA 172 37 100.0 36 ..................................... AAGAGTTGTTGGAAGACTTGAATAATCCTGCATTAA 245 37 100.0 37 ..................................... ACTAAAGCCGATTCGGTTCCCTGCTCTTTAAGCGAGA 319 37 100.0 37 ..................................... AACCTACTGATATCAGTAATTGTGTAACCACATTTTT 393 37 100.0 35 ..................................... TCAATGACAACAGACTCAGAAATAGATATATTTAT 465 37 100.0 34 ..................................... TTCTTGATAATAACGTACCGTTAAGCATGGATAA 536 37 100.0 36 ..................................... AGTTAAGTCTCTCCGCTACAAATTCTAACAGTTTTT 609 37 100.0 36 ..................................... ACAGTATATATTTTCTAACATCAGACTCTTTTTTGA 682 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATTATTTCTTGTGTAACCAAATTTTA # Right flank : TTAAATTTATCGCCTGTTTCCTGTGTGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 36-510 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000384.1 Methanosarcina spelaei strain MC-15 contig_444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 36 37 100.0 32 ..................................... TTTTCCATAACCATTCCAGTACACTGGTCAAT 105 37 100.0 36 ..................................... GATCAACTCTTTGGCTATTTCAACTCTTTGTTCATT 178 37 100.0 35 ..................................... TAGTTTGTCTAAAGTTCCCTTAACTGATTTAATTT 250 37 100.0 41 ..................................... TAAAAAAAATAATAAAGCAATAATACATCATTTAGAGTATC 328 37 100.0 36 ..................................... CAGTGCCATTTTCAGAAATCATAATATCACACGCTT 401 37 100.0 36 ..................................... CGATTTTGACTTTTTTGCATGCCTCGGCCTGTTCGA 474 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CATTTCTCAACTTAATAAACTACATTTACAGTAACA # Right flank : AATCTTCGATTGCGTCTTTGAAACTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 504-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000386.1 Methanosarcina spelaei strain MC-15 contig_446, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================== ================== 503 38 100.0 32 ...................................... TGTGATTCCATCAACCACGTTTTGCAACCTCC 433 38 100.0 31 ...................................... TCAAGGTGCAGAAGAAATCTATGACTTAACT 364 38 100.0 46 ...................................... AAAAATCAGGCACGTTATTATGTTCTAATGATATCATTCGTGAGCA 280 38 100.0 36 ...................................... AATATACTACTCCTCCGTTTAGTTTTTTTCTTTCTT 206 38 100.0 35 ...................................... CAGGCAGGACTCAACAATTGTCAAGCTATATTCAT 133 38 100.0 35 ...................................... GAAAAATTTTGCTGCAAAGAATGTATAATAGAAAA 60 38 97.4 0 .....................................A | ========== ====== ====== ====== ====================================== ============================================== ================== 7 38 99.6 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACT # Left flank : ATGACTGTTTTAAGTAGCCTCGTC # Right flank : AAAAATTAAAATTAAAAAAAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 286-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000451.1 Methanosarcina spelaei strain MC-15 contig_504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================== ================== 285 39 100.0 34 ....................................... GGTACAAAGAGTATCCAGTCACAGTTTGCCCCGG 212 39 97.4 34 .G..................................... TTCAGGTTGAAACCAGATGGACAAGCACTGTAAT 139 39 100.0 33 ....................................... AAATCAATTGGAACGTAAGAAAATCCAGACTTT 67 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ================================== ================== 4 39 99.3 34 TTATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TATCTTTTGAATAGATCCAGCTCT # Right flank : CAAAAAGGTCCAGAAACAAACAAAAAAGA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.10%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 20-274 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000452.1 Methanosarcina spelaei strain MC-15 contig_505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 20 38 100.0 36 ...................................... CGTCGGTAGGGTAGCACTTGGAGAAGGTGTGTTGTA 94 38 97.4 32 A..................................... TGAGTACAATAGATACAGCAATAGAAGATTAC 164 38 100.0 35 ...................................... TTCATTTGAACCATTGCCGTTAACAGCCTCGATTT 237 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 4 38 99.3 35 TATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GCTACTTTCTAGGCTGATAT # Right flank : ATATAAATAAGAAAATTTGGAGAGAATTGTATGTA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 28-284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000454.1 Methanosarcina spelaei strain MC-15 contig_507, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 28 37 100.0 37 ..................................... TACAAGGTTTAGCGGTACCTCTCAATGTAAAAAATAA 102 37 100.0 37 ..................................... GTATTTCTCCTAGCATTTGTCTCAACCTCTTAATCTT 176 37 100.0 35 ..................................... TCAAATGGTGGCGGTGTAAATGATAACCGAAAAGC 248 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTTTTTTTTTTCTTTTTTTTTTTTTTTA # Right flank : TAACTCAGCGTTGAGATCATGCT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 285-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000453.1 Methanosarcina spelaei strain MC-15 contig_506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 284 37 100.0 36 ..................................... ATTGAAAATTGACATCTAAAATCTGACATAATTACC 211 37 100.0 37 ..................................... TCAGTAACTACCTTCTGATTGTAATAATCGAACCAGT 137 37 100.0 37 ..................................... ACGTGTATCCCGCCACCGATAACAAAAAATAAAATCA 63 37 97.3 0 ...............................A..... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTCTCTTCCCACATTAACTTATAA # Right flank : CAATATAATAAATATATGACAAAGAGT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 24-281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000456.1 Methanosarcina spelaei strain MC-15 contig_509, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 24 37 100.0 37 ..................................... TCCAGGGTAATATAATTGATACAAACAAGCCTGATAA 98 37 100.0 37 ..................................... CGAAGGGGACATCACTCGGAATTCCGAAGGATACACT 172 37 100.0 36 ..................................... AATAAATAATTGTCCTGAGATAAGGTAAGTAATTTT 245 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATCAGCATTCCAATAATACTCTAA # Right flank : TGAGTAGATTCATTAAAGAAATTTA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 35-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000480.1 Methanosarcina spelaei strain MC-15 contig_530, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 35 37 100.0 37 ..................................... ATATCATCTTTTTCATCTATTAAATCAATGGTCCCTG 109 37 100.0 36 ..................................... GTGAGATAATACCTTCCATCTGGAAGCTTCACGGCG 182 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CATTTTATAGCAAATTATCCGTTAATCATTCACTA # Right flank : TAGAGAAAGAATGGACGACGATTAGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 30-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000483.1 Methanosarcina spelaei strain MC-15 contig_533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 30 37 100.0 35 ..................................... ATAATTTGATATTCTGGATCGGAGGGGATAGAATC 102 37 100.0 35 ..................................... TAATATTAGTCCATTAATTGTGTTGTTGCAGGGAA 174 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ATAATATCAAACTAATTACTCATTTTTTTA # Right flank : TAAAAAAAAAAATATATACTAAGTGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 27-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000484.1 Methanosarcina spelaei strain MC-15 contig_534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 27 37 100.0 36 ..................................... ATAATAACAAATTTGCACTAACCAGTGGAGCTAAAA 100 37 100.0 36 ..................................... TAATCTTGGACTGTTAAACCAGACTCGATATAGCTG 173 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TGTTCTCTTCCTATATTTCATTTATAA # Right flank : GGAAGTGCAAAAAATGTATTTGCCCAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 207-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000485.1 Methanosarcina spelaei strain MC-15 contig_535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 206 38 100.0 36 ...................................... TACATCTGTTGGAATACTTGTTCCATTACAGTTATC 132 38 100.0 36 ...................................... GAGGTTGTTTGTAATCGTCACTTTTTGAGCTGTTGA 58 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACT # Left flank : ATTAAAAACACTTAAGTCAACAAATTCA # Right flank : TTGCATGAAAAAAACTGACCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 208-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000487.1 Methanosarcina spelaei strain MC-15 contig_537, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 207 38 100.0 34 ...................................... ACATTGGGTCAAAGACTTCTATAGGAACTTCCAT 135 38 100.0 36 ...................................... CAGTACTGCACCTGCAGTACATCGCAGATAGGCTAA 61 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACA # Left flank : ACATCTAAAATCATTCATATATAC # Right flank : AAAAATAAAGAGAAAAAAAAAAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 208-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000489.1 Methanosarcina spelaei strain MC-15 contig_539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 207 38 100.0 35 ...................................... CAATGATTCCAGATACTAACAACAATGAAATTAAG 134 38 100.0 35 ...................................... AAAACGTGAAGTGTTTGTCTAATCGTGTTTGAATA 61 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 100.0 36 TATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ACCCTCTTAATATCTAGATTTA # Right flank : CATATAGGTGACATAATCGCCATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 22-201 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000491.1 Methanosarcina spelaei strain MC-15 contig_540, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 22 37 100.0 35 ..................................... CTATAGAGGAGGCTGCAAAAAAACTTGAAGTATCA 94 37 100.0 34 ..................................... AAGTAAAAGAAGGTTTCATCTACAATGTAGCTGG 165 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGATTGTCAAGCTATATTCATA # Right flank : TGGAAAATGCCGGTACAAGAGAATGATAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 23-203 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000492.1 Methanosarcina spelaei strain MC-15 contig_541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 23 37 100.0 36 ..................................... AAATTGTATAATGTAATAAAAAAATCGTCCTTTTTC 96 37 100.0 34 ..................................... ATTTCAATGCTTTTCCTTTCGATTAGCATGGGAA 167 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 40 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GTAAATATAGTTATTAAGAACTA # Right flank : ATCTCCTTAAAACACATAACGAAATAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 21-204 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000494.1 Methanosarcina spelaei strain MC-15 contig_543, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 100.0 38 ..................................... ATCGCAATAAGTAAATTTGGAGCGCATTGTATGTACAG 96 37 100.0 35 ..................................... TAATTTCTCCTCTAATAAACTACATTTACAGTAAC 168 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CAGTTAACTGACTTTTTTTTA # Right flank : TTTTCCATGAACAAACATGTGAAC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 24-205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000496.1 Methanosarcina spelaei strain MC-15 contig_545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 100.0 35 ..................................... TTGTTCAGAAGTCAAAAACAGATAGAAATATTATT 96 37 100.0 36 ..................................... GATGTTAGTATCGTTGATTTTGAAGAGTTGTTTAAT 169 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGTATTTTCTACTTTTTCTCTGGA # Right flank : ATAAAGGAAAAGAAGCCAATAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 211-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000497.1 Methanosarcina spelaei strain MC-15 contig_546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 210 41 100.0 31 ......................................... TCATAATGGTTAATTGTTGCTGTTGGGAGTT 138 41 97.6 34 ...G..................................... TAAAGTTCGACATTCGGTATATCCAGACGTTCTA 63 41 100.0 0 ......................................... | ========== ====== ====== ====== ========================================= ================================== ================== 3 41 99.2 33 TATTATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTGTTAATTATTCTT # Right flank : CCAGAGAATGACAGCTGATGACA # Questionable array : NO Score: 8.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 21-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000499.1 Methanosarcina spelaei strain MC-15 contig_548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 21 37 100.0 35 ..................................... AGCAGTACACAACATGTATTTGCCCCTTCTGCCAC 93 37 100.0 36 ..................................... ATCACAAGAAGATGGAAGAGGCATTGAAGGAGGATT 166 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AACCAGAAACTTATTCGTTTA # Right flank : GAAAGTCTACGTCTAAAGAAACG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 204-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000503.1 Methanosarcina spelaei strain MC-15 contig_551, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 203 38 100.0 33 ...................................... CAGTAGACAACATAACTTTTCAAGGGCCGGCAG 132 38 100.0 35 ...................................... AAATTCTTCTTAAAACAGTAATGTTATTTACCCCT 59 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 100.0 34 TATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CATCATTGCCACCGTAAA # Right flank : CTGAAGTAGATAGGAAAAGATA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 7889-7561 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMVP01000099.1 Methanosarcina spelaei strain MC-15 contig_188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7888 37 100.0 35 ..................................... ACCTATTCTTTTCCTTCTGATCCATTCAAAATAGT 7816 37 100.0 35 ..................................... ATATCGTACAGTGTACACCCAATAACCAGTAACCA 7744 37 100.0 36 ..................................... AATGAACCAAGTATATGAAACCTTAACAATTCTCCA 7671 37 100.0 37 ..................................... TTATTCAGGGTATGACTATCCAAAACTCGATGGGAGA 7597 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCCTCCCCTTATCACATGATTTCG # Right flank : TGATATATGTGACGATGATGACGAAAAAAAGAACAAAACAAACTTCCATTTATGATAATATTCCGACTGAAGCTAAGTAACTGTCACAAAACAGATTAGGCAAACTTTTCATAAAGTTAATTTTTAATTGGTGATAATGATCTTGAAAATCAAGGCATCCAATCGAAACTTATACATAGTTTGTTCTGTGACGACTCCTAAAACAGAAATAGACATTAAGTGGAGGGGTCCCTACGCATGGCCAAAATTCGAGACTGAATCTAATCTTCCCGCTATTCCTAAGCACCCTGGTGTCTACTTGTTGACCTCTATATATGAAAATGGCTACATAATCTATGCTGCAGGAATTACACGCCGGCCTATACCCCAACGTTTCCGAGAGCACACCAGAAAATACCTGAGCGGAGATTACACGATCTTGGACATGGATGCCATGAAGCACGGAGTACGAAAAGAGATATGGCATGGATGGAGCTGGACGCCAGATAAACGCAAAGAGT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //