Array 1 47188-46184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETW010000035.1 Nocardia farcinica strain JNQH325 NODE_35_length_67343_cov_27.938452_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47187 28 100.0 33 ............................ CCCTCGACGGCCGGTTTCCAACACAACAGACAG 47126 28 100.0 33 ............................ CAGCGCTGTGCCGGTGGGTACGGCGAGCGCGAT 47065 28 100.0 33 ............................ CAAGGGGGTGTTCCTGGTGGACAGCGAGGTCAA 47004 28 100.0 33 ............................ CGCCAGCCGATCGGGGCGAGCTTCGACGTCGGC 46943 28 100.0 33 ............................ CTAGAAATCTCGGATCTGAAAGGACGGCTCTCA 46882 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 46821 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 46760 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 46699 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 46638 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 46577 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 46516 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 46455 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 46394 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 46333 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 46272 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 46211 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108476-108020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETW010000014.1 Nocardia farcinica strain JNQH325 NODE_14_length_126507_cov_28.518070_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108475 29 100.0 32 ............................. TGGCCGCCGATGGGTACGTCGCCAGTCACGAT 108414 29 100.0 32 ............................. TGACCAAGCGGTTCCCGTCCCGCTCCAAGTAC 108353 29 100.0 32 ............................. CAATCCTTCCTCTCGAAGGATTCGAACCGCTT 108292 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 108231 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 108170 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 108109 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 108048 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCCGTCGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCTCGTACGCGGGCTTCGCCTTCGGGCAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116185-115669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETW010000014.1 Nocardia farcinica strain JNQH325 NODE_14_length_126507_cov_28.518070_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116184 29 100.0 32 ............................. ACCACCAGTTGCCATCGCTGCAACTCCACTCG 116123 29 100.0 33 ............................. GTGATGTCCTGCAAGGTGTACTCGAGGATGGCC 116061 29 100.0 32 ............................. GCGATCAGCTGATCGACCAGCTCAACGCCGCC 116000 29 96.6 32 ............................G GGTCCGCCTGGGTGACGCCCGGCGCGGATGGC 115939 29 100.0 32 ............................. GGATACCGACTCGTCGAGGAGGCGTCGTGAGT 115878 29 100.0 32 ............................. GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 115817 29 93.1 32 ..........................TT. CAGTCATGAGCGGCCGCCGGGTCCGGTGTCCA 115756 29 93.1 31 ...A..................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAA 115696 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGTTGGTCCGGGCTGCGGTGGCGATGGGTCGTCGACGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCTTGTCCCTCAGCGAGGTTGCCCGTCTTGTCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACCCGCAGGCCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAGATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94988-93374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETW010000002.1 Nocardia farcinica strain JNQH325 NODE_2_length_319245_cov_28.530620_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94987 28 100.0 33 ............................ CTCGAGGTGCTCTGTTTGTTGACCGGCCGCCGA 94926 28 100.0 33 ............................ CGCGCTGATCACTGCGGCCGACTGCGGGGAGGT 94865 28 100.0 33 ............................ CCCCATCGCCATCAGTTCGTCCGCCTCCGTGTT 94804 28 100.0 33 ............................ CCCACCTACTTCACTCCGCCCTGGGCGGCCTGG 94743 28 100.0 33 ............................ CCAAGCAGCTACCAGCGGGTGAACGGCTCCCCG 94682 28 100.0 33 ............................ CCGAATGAGCTTGCCCTCGTGGGCATTTAAGGA 94621 28 100.0 33 ............................ CTCGTCGCGCATCAGCGCCGCGCGTGTGACGAA 94560 28 100.0 33 ............................ CCGGTCCCATTCCGCATCGACGTCAGTCACCGC 94499 28 100.0 33 ............................ CGATATCCGCGTCCAGGGCCAGAACTGGGCCCA 94438 28 100.0 33 ............................ CGGGATTCTGAACCGGGTGAAGCCGGGTTCGTG 94377 28 100.0 33 ............................ CTAGGCAGGATCGCTAGCTCAATTGGCAGAGCA 94316 28 100.0 33 ............................ CTCGACGGAGCAAGTAGCGGACGCTCTCGAAGA 94255 28 100.0 33 ............................ CAGCCGGAGCCGGGGCCACGAGAGAAGGACTTT 94194 28 100.0 33 ............................ CAATACAGGATTTAAGGTAGGAACTACCAACAA 94133 28 100.0 33 ............................ CAGCAGCGCCAGCCCGTGCGTGTCGGCCAGCAG 94072 28 100.0 33 ............................ CCATGACCATCACCCCCGCCGCGACCTGCTCCC 94011 28 100.0 33 ............................ CTCGGTCACCGGCTCGATCTCACCCAGCAGGAA 93950 28 100.0 33 ............................ CTGGGCGTCGAACATCACGCCGGTGCCCTCGGC 93889 28 100.0 33 ............................ CTCGGAGGCGGTGCCTTCGCCGCGGTACTCCAG 93828 28 100.0 33 ............................ CGACGACGTCTTCGCCCAGACCGGTAGCGGCCG 93767 28 100.0 33 ............................ CGCGCAAAAGAACCTCGTGCCCAGCGGCGACAT 93706 28 100.0 33 ............................ CAGCCCAGCGCAGCGACCACCCGATCAGGTGGG 93645 28 100.0 33 ............................ CCAGGCCGTGGCCGACACGTCGTAGACGCCGGT 93584 28 100.0 33 ............................ CCGCGATGCGCCCGAGCTGCAACGCCTTCCCGC 93523 28 100.0 33 ............................ CTGGAACTGCGACGAGTGGTTCTCCTGCGGCGA 93462 28 100.0 33 ............................ CCCGATGACCGCCATCCCGCCACCCAAGCGGAC 93401 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGGAGT # Right flank : CTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCATGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTTGTTCTTCCCGGCCTGGGTGCGGTGTTGTCGGCGCCCGGTCTCCCGGTCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105071-104172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETW010000002.1 Nocardia farcinica strain JNQH325 NODE_2_length_319245_cov_28.530620_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 105070 29 100.0 32 ............................. TCGGTTTCCGTGGCCCTCTGCCGCCGCTGGAG 105009 29 100.0 33 ............................. CCACAGCAGCCAACCCAGCGCGGCCATCACTGC 104947 29 100.0 32 ............................. ACCGAACGAGCCCGGGCGCAAGGGTTCCCGGA 104886 29 100.0 32 ............................. CGGTGCGCGATGCCCTCGGCGTAGCAGTGATC 104825 29 100.0 32 ............................. CCAAGTTCAACCGCTCCGAGCTGCTGGCGGCG 104764 29 100.0 32 ............................. CAGGCGCTCACCGAGAAGGTCGCCGAGGATGC 104703 29 100.0 32 ............................. CCGCCTACGTCGCGCGGTTCGGCGAACGCATG 104642 29 100.0 32 ............................. ACCATCCGCTGCTGCTCCTCACTCGCCAGGCG 104581 29 100.0 32 ............................. CGTCCTGGGGTGTCCCGGGACATCCTGCTCGG 104520 29 100.0 32 ............................. GCTGGGAGACCGCGCGGTGCGATCCAGAGCGA 104459 29 100.0 32 ............................. GTGAGGGGACTGCTCAGTGCCAATGCCGCCGT 104398 29 100.0 32 ............................. CCCACCAGGTGATCGGGCACCACCTCGACCTG 104337 29 100.0 32 ............................. ACGGACCGGCAGGGCTACAGCAGCGCCGAGGT 104276 29 100.0 48 ............................. CCCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTCGAC 104199 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= ================================================ ================== 15 29 98.2 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : AGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACGAGTCCCTCACTGCGTTGACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCCCCCGAGGCCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTGCCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 108131-107431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACETW010000002.1 Nocardia farcinica strain JNQH325 NODE_2_length_319245_cov_28.530620_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 108130 28 100.0 34 ............................ CTCGCCTGCACCCGAAATCACCGGTCCCACAGAG 108068 28 100.0 33 ............................ CGCCGATCACCTGACCGACCGTGCGCCGCTCCA 108007 28 100.0 33 ............................ CTCGGGCCGCCACGCAGGGCCCAGGTCGGCACT 107946 28 100.0 33 ............................ CCTCAGCCCCAGCTCGGCCGCCGAACAGCCCAT 107885 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 107824 28 100.0 33 ............................ CTCCCTTGGACTGCTGATCCGCCGCGCTCATCG 107763 28 100.0 33 ............................ CGACTGCACGATGCCGGCCTGCCCGATTCCCTC 107702 28 100.0 33 ............................ CGGAGCGCCAATGTCCACCACGCAGTACGCCGC 107641 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 107580 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 107519 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 107458 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGAAACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //