Array 1 32026-31517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQC010000027.1 Bacteroides uniformis strain DFI.1.173 OAHADBOP_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 32025 47 100.0 30 ............................................... AGTTCGGTAAGATGGATAAGGGCGCGGATA 31948 47 100.0 30 ............................................... TTTGCACGTGTTACAGCAAAACAAATTATA 31871 47 100.0 30 ............................................... TCGTGCTCTATAGCCTTGACCCCCCATCTG 31794 47 100.0 30 ............................................... CGTCCTCAAAGACGAAGTTAACAAACCTAC 31717 47 100.0 30 ............................................... AGTATTAAAGAACTTATGGAATTCTACAGT 31640 47 100.0 30 ............................................... GCTTGCCAATTTTGAAATACATGCCATAAT 31563 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGGCCTGCTTTCCATATTTCGTCCAGAAACACGACATCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCTTACTTGTCGGATTCTTTCAGTCGGCTAATGCTGACAGGGCCGAATATCTCGTCGGGCGTAGAGAAGCGGGACATCAGGTATTCAAAGGCACGGGCATCTGTAAAAGCCGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGTCCCAGGAGCAGAATGCTCTCGCCTGCCAGAGCTGCCAGCAGGGAGAGGTTTATTTCAGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGACGAATGCGTTGGGTTATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAAGTGTGTAAAGATACAAAATAGTAGGGAAATCAGAGAGAGTCTTATTAAGATTTAGTATCTTTGAACCATTGGAAACAGCGTCTTCTGTTTGGGCGATAGGTTCGTACCA # Right flank : TGTTTTACCCGTTTTTACTACCTTTGTTTTGTTGTGATTTGCTCTCATTTTCATATATTTGTTGTAATCTGAAGTATCTTATTTGATTATCAACGCTTTGTAGAAAACTCGCATGAGAACGGGCAACGGATAAGAAAATTCCAAGCTGTTTAGAATCACTATATTCCTCATGCTTTCAAATAACTCTTTTTTCTTGATGCAAAGGTAGCATTTTTTCGTGATTGCCGGTAATTTTCGGGCATAAAATATCACGGTCATTTCAAGAAACATATACAGCGGACATGACAGCCATACCGTAGCCGAATCCCCGTAACTCACAGGCAAAGGTAACCCGTGTCCTGCTCGTACAAGCAAGGTCAAGCCCTCCGGGTGTCGTGGAAAAATCATCCTCGCCCGGAGGGCTTGCGGTATTTTTCCCGCCAACCTTGCATGTACGGGACACGACCTTTTATGGCCTGTAGTTACGGGAACTCCGGCCCCGAAAAGCCGGATCACTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 47694-45573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQC010000030.1 Bacteroides uniformis strain DFI.1.173 OAHADBOP_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 47693 47 100.0 30 ............................................... TGCGGGCGTTCCGAATATCGGGGCTGACCG 47616 47 100.0 29 ............................................... GCGCTTAAGTTGTCCGCTAACACGGGCGA 47540 47 100.0 30 ............................................... GGGTTCTCACCACCCTCTTCATATCCATGG 47463 47 100.0 30 ............................................... CCTGTCCGACTTCATGTATACTCTTTCTCC 47386 47 100.0 31 ............................................... AACGTGGCAATGACAATGACACCCGTAAACG 47308 47 100.0 30 ............................................... TCTGATTGTAATACTCAGCAGCCTTTGTAT 47231 47 100.0 30 ............................................... TGGAATATTTGTATTATTCGTTTATGTTAT 47154 47 100.0 29 ............................................... TGGAGAATAATATTTCCCAAAAAACACAT 47078 47 100.0 30 ............................................... TGCTTCGTCTAGGCATACCAGTACCTCTAC 47001 47 100.0 30 ............................................... GATATACAGAATAACAGGCTCATCTTCCCT 46924 47 100.0 29 ............................................... GGATAGATGCGCTTTTTTTAGTAAATACT 46848 47 100.0 30 ............................................... GGGCAAACTAATCACCACAGAGGATGGGTA 46771 47 100.0 29 ............................................... TGTACACCGTGAACCGCTTCAGGAACTGG 46695 47 100.0 30 ............................................... AGTATGTCGAAATAGAAATGGGACAATTCC 46618 47 100.0 30 ............................................... GTCATTATCAAAAGTGTCGTAGATGTGGTA 46541 47 100.0 29 ............................................... TATATAGCCAATCTTAAACAGGTAAAGAA 46465 47 100.0 30 ............................................... TGGCGTCGAAAATAGCCTTTAAATCATCCT 46388 47 100.0 30 ............................................... GGTGTCTATTAACCGTCCATGCTGATATAC 46311 47 100.0 30 ............................................... CTTCTGCTTGCTTGGCATAAGACGTTTGAC 46234 47 100.0 30 ............................................... TCATGCTTATATATATAATGTATGCCAAAA 46157 47 100.0 30 ............................................... CAGGGGCATGGTGGCAATCTCTATCAGTGC 46080 47 100.0 29 ............................................... TTCTGTGAAGAAATTGAAATTAGTATATG 46004 47 100.0 30 ............................................... ATCAGCATTCGCTTAGGGGTGTTGGAGGAC 45927 47 100.0 30 ............................................... AAACCGGCTGTCCGTATGGACGAGACACCC 45850 47 100.0 30 ............................................... TTTAACCGCCTCTGTGATTCCGGCTTTCCG 45773 47 100.0 30 ............................................... CTCGTGTACGATGAATCGTGATTCGCGTAC 45696 47 100.0 30 ............................................... TTTCGGGTATATTCTAACTTGCATGAAGCC 45619 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 28 47 100.0 30 GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : ACGGGCG # Right flank : TGATTACAAGTAACAATCTAATATTCAAACGATTACACATAGTATTAGAATATAAAAAAAGAATGCTGCTTCTAAAAAAATCCCGCCATTGCGCGGGATTTTTTTAGAATAATTCTAATTGTTGTCCAGGCATATTCACATCCACAGTCTTTTTCCCATAAAAAAGTGCTATATTTCCAAATTGCTTGTCCGTAATGCACATAATTCCGACACTTCCATAGTCCGGTAAGAAAGATTTAACTCTTTTTATATGTACCTCCGCATTCTCACAACTCGCACAATGACGAACATATATAGAGAACTGGAACATCGTAAATCCATCCTTTTGCAGATTTTTTCTAAATTCCGCATACGCCTTTTTATCCTTCTTGGTTTCGGTAGGCAAATCAAACAACACTAATACCCACATAATGCGATATTCACTAAACCGGTCCATCACATCTCTGGATAGGATATTTTACGCAACTCACCACTGAAACATTTATACAGAGAAGCCGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 210-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQC010000031.1 Bacteroides uniformis strain DFI.1.173 OAHADBOP_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 209 47 76.6 30 A.CCGT..G..AG.GAG.............................. AGGTTCCGAACAGTTACGACTGGCAATGTC 132 47 100.0 30 ............................................... TCTTGACCCATGTAGGAGATATCCTCAACC 55 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 92.2 30 GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TCACACTGAATGCCGCTTCGGAATATTTTCCGACATTCAACTTTGCCATTACGGGGCAATTCCCGTCGGCATCCACCTCGCTCTTTTTCAGGTAGAACGACACCTTTACATTTGCCTGGTTCATAACCAATTCCTTTGTTTGCAAAATTATTATATGCAGAGTAAATGAACGGCATGAAAAATGTAGCGGAACGTAGAATAAGACCCCTCGGCCTGCAAACAAAGCCTGTATTTTTTTCTGATACGGAAAAATATGACTAAGTTTGCGTCAGCAGACATGGAAAAAACAGCGTTCTTTGCGGTGGTAAACGGGGTTATCAATGAAAGACGAAAGCTTGTTTTTCAAGCCTCTTTTTTTATCCCGAAAAGGCAACGGATAAGTAGTGATTTGTCCTCCTAACTCCACCTAAAACTTGCTAAAAGCCTCCTGCGGAAGAATGTGGTACAAAACGACATATCCCTTTTGCTATCAAACACTTTACATTATTTTCTCCAAAGTT # Right flank : CTGCGGGCG # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //