Array 1 19512-18090 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOD01000106.1 Neisseria meningitidis strain S00-1275 10-022_contig158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19511 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 19445 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 19379 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 19313 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 19247 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 19181 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 19115 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 19049 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 18983 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 18917 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 18851 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 18785 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 18719 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 18653 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 18587 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 18521 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 18455 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 18389 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 18323 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 18257 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 18191 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 18125 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //