Array 1 387306-389503 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOQ01000024.1 Bifidobacterium sp. wkB344 ctg7180000000520, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 387306 29 100.0 32 ............................. CTGCGGACGTTCGGATACATGCCGTTCGACCC 387367 29 100.0 32 ............................. AGCCATCTCATCATTCGGCCTTCCCGCTCTCA 387428 29 96.6 32 ............................G GGAAGCCGAAATCGGCTGCCTTCGTCTTTGTG 387489 29 100.0 32 ............................. ACTGGGAACTCGGGCCAAGGGAGAAAGCATGA 387550 29 96.6 32 ............................T GCGAAACGAACCTACCTGGACATGTCACGATG 387611 29 100.0 32 ............................. GTGACGCCCTTGGAGGTCACTCTCATGACCGA 387672 29 96.6 32 ............................T GTGAGCTTCAACCTCGTCTCCTTTGCTATGAT 387733 29 96.6 32 ............................T CTCAGTAGGTATACATGCTACCAATTCCGTCG 387794 29 96.6 32 ............................G GCGAGGTTGGCCAGGCTGGATGCGCCGCCCTG 387855 29 96.6 32 ............................G TCCCACGGGTGGGCGACATATGGGAGTTTTAT 387916 29 96.6 32 ............................G TATGGCCTATATCCCTGATGATGTCTCCCAGA 387977 29 100.0 32 ............................. TAAGGGTGCTCCAGACAATCCCGACGAGGCTG 388038 29 100.0 32 ............................. GAGAGAGCAAGGGAAGAACGATGAAGGATATT 388099 29 96.6 32 ............................T TCACCTGTGTCTGTGGGTTGGTCTTCCAGTCG 388160 29 100.0 33 ............................. CTGCTTCCTGGTCCGCACCTTGTTCTCGTTCAT 388222 29 96.6 32 ............................T CGGATGTGCAGTATCGGCTTATGAAGCGCCTT 388283 29 93.1 32 ........................G...T TCCAGCAGATCGCTTCCAATAACAAATGGACC 388344 29 100.0 32 ............................. GGCGTAGACTCGTTCCTGCGGTACATGTATCC 388405 29 96.6 32 ............................T GTTCATGACAACCTCCTTGTTGTCAATGCCTC 388466 29 96.6 32 ..............T.............. AAGCTGTCTCCCAATGACACGGAGCTGACCCT 388527 29 96.6 32 ..............T.............. CGGATCAACGCCCAGGACAAGCCAGACAAGCA 388588 29 93.1 32 ..............T.............T CGTTGTAGATGCGCACCGTGATATCGGTGTCG 388649 29 93.1 32 ..............T.............G GCCGGATGCCGTCCCGGAGGCGTGGTCCTGGA 388710 29 96.6 48 ..............T.............. AGCGTGGGCGCACTGATTGAAGGGGCGATACAGCTAGTCAACGCACTG 388787 29 93.1 32 ...............T............T TCACCTGTGTCTGTGGGTTGGTCTTCCAGTCG 388848 29 100.0 33 ............................. CTGCTTCCTGGTCCGCACCTTGTTCTCGTTCAT 388910 29 96.6 32 ............................T CGGATGTGCAGTATCGGCTTATGAAGCGCCTT 388971 29 93.1 32 ........................G...T TCCAGCAGATCGCTTCCAATAACAAATGGACC 389032 29 100.0 32 ............................. GGCGTAGACTCGTTCCTGCGGTACATGTATCC 389093 29 96.6 32 ............................T GTTCATGACAACCTCCTTGTTGTCAATGCCTC 389154 29 96.6 32 ..............T.............. AAGCTGTCTCCCAATGACACGGAGCTGACCCT 389215 29 96.6 32 ..............T.............. CGGATCAACGCCCAGGACAAGCCAGACAAGCA 389276 29 93.1 32 ..............T.............T CGTTGTAGATGCGCACCGTGATATCGGTGTCG 389337 29 93.1 32 ..............T.............G GCCGGATGCCGTCCCGGAGGCGTGGTCCTGGA 389398 29 96.6 48 ..............T.............. AGCGTGGGCGCACTGATTGAAGGGGCGATACAGCTAGTCAACGCACTG 389475 29 93.1 0 ...............T............T | ========== ====== ====== ====== ============================= ================================================ ================== 36 29 96.8 33 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : GCCACGTCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGCATCACAGGGCAAATCCGAACCGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCGGATTGGAACCCCGTAGACTGTGAGGGATTGGCTCTTATGGAGAAGCCTGCTGATGGTGGCGATGGCAGATCCGCAGGTGGTGGAAACCGATACCGTCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGTGCGGCAAGGTTCCGTCGCTCGCGCTCCAGCTGAGCGCAACCGGACTTGTGTACTTTTCAAACGAGCTTTACCGATGAGTGCTGAGCACTGATTACTGGGTGAGTGCATGGCTAAGGAGCTCAGTGTAGATGGTTTGAATTGCAGCGGCTGAGACGGGAATAGAGAGGGCTCGAAATGCAAACTCATTAAAAAATAGAGATCTTGTCTATTATATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : TCACCTGTGTCTGTGGGTTGGTCTTCCAGTCGGTGCTCCCCGCATCCGCGGGG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : GTGCTCCCCGCATCTGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43-1113 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOQ01000002.1 Bifidobacterium sp. wkB344 ctg7180000000459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================== ================== 43 28 100.0 33 ............................ GGCCGGATGCCGTCCCGGAGGCGTGGTCCTGGA 104 28 100.0 49 ............................ CAGCGTGGGCGCACTGATTGAAGGGGCGATACAGCTAGTCAACGCACTG 181 28 92.9 33 ..............CT............ TTCACCTGTGTCTGTGGGTTGGTCTTCCAGTCG 242 28 96.4 34 ..............C............. CCTGCTTCCTGGTCCGCACCTTGTTCTCGTTCAT 304 28 96.4 33 ..............C............. TCGGATGTGCAGTATCGGCTTATGAAGCGCCTT 365 28 92.9 33 ..............C.........G... TTCCAGCAGATCGCTTCCAATAACAAATGGACC 426 28 96.4 33 ..............C............. CGGCGTAGACTCGTTCCTGCGGTACATGTATCC 487 28 96.4 33 ..............C............. TGTTCATGACAACCTCCTTGTTGTCAATGCCTC 548 28 100.0 33 ............................ CAAGCTGTCTCCCAATGACACGGAGCTGACCCT 609 28 100.0 33 ............................ CCGGATCAACGCCCAGGACAAGCCAGACAAGCA 670 28 100.0 33 ............................ TCGTTGTAGATGCGCACCGTGATATCGGTGTCG 731 28 100.0 33 ............................ GGCCGGATGCCGTCCCGGAGGCGTGGTCCTGGA 792 28 100.0 49 ............................ CAGCGTGGGCGCACTGATTGAAGGGGCGATACAGCTAGTCAACGCACTG 869 28 92.9 33 ..............CT............ TTCACCTGTGTCTGTGGGTTGGTCTTCCAGTCG 930 28 96.4 33 ..............C............. CTTGCCGTCGGACCAATCCTCTGGCTTGCCGAG 991 28 89.3 66 ........T.....C...........T. TACAGGCGGCTTGCAGGGCATCGGGGATGATCCTGACGGAGAAGTTGCTGCTCGACCACATCGAGC 1085 28 82.1 0 ...T..........CT.....C.....T | C [1090] ========== ====== ====== ====== ============================ ================================================================== ================== 17 28 96.0 37 GTGCTCCCCGCATCTGCGGGGATGATCC # Left flank : GGATGATCCTCGTTGTAGATGCGCACCGTGATATCGGTGTCGG # Right flank : TTAAAGGACATCTAATGGATGTCCTCAGGTTCACCAATATGAGAGGAGGCGATCAGAAAATACTTGAGGATTTCATGAGAGAAAGGGCATCCAGGGATTGTGCCTGTACCTGTCATGACAACATTCATGAGGATCTGATCGATGGCTATCCGTCGAGACATCCCCTCATCGAGAAATGGGTGAAACCGAACGCCTGGTCTGGGATTCGCTGGATGATGCGGACAGGAGAATGATCCAATAGGATCGCATATACTACGGTACAGGTTGCGGCGGCGGCAAAGCAGAGGTGAATTTCTATGGAGTTATCGGTATAAGGCGATTCGACTAGTTCATTCCCGGGCTCCGACATACTGTTTCAATCAGTAAAAGAATCACTATTAGGAGTGTCGGCGAAGAATCCATAACCACTTCATGGTTTGAACATGAGTATGGTTTGAAGAGGATTGTTTGATTCTCTGGAGATGATCCGGCTGTCTACTCGGCCAGGGACGAGAATGCTG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCTGCGGGGATGATCC # Alternate repeat : GTGCTCCCCGCATCCGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //