Array 1 1567576-1565710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072257.1 Bacteroides fragilis CL03T12C07 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1567575 35 100.0 39 ................................... AGAATTTAGTATTAACTTAAAAATTTGATACCTATGAAT 1567501 35 100.0 36 ................................... GAAGGAAACGGCGCCGCTGGATATAAAACTGGCAGA 1567430 35 100.0 34 ................................... AAGACCGTGAAATGGAACATCTGATGGCACTGAC 1567361 35 100.0 33 ................................... TTATTTCTGATTTTGCTTCTTGCTCTGACAATC 1567293 35 100.0 37 ................................... TATTCTTTGATGCCGTGATTTATCACACGATTAAACC 1567221 35 100.0 35 ................................... TTAATATGCAAAGCACTCGGGGGTATTGCATTTTC 1567151 35 100.0 34 ................................... TAAGAGAAGCCGCATTAGAATTAGCAAATGCATT 1567082 35 100.0 37 ................................... TCAGCAACATATCGTTGAAAAATTCGTGGCTTATTGC 1567010 35 100.0 36 ................................... AGTAAAAAATTCCTAAAAACAGAACTATGGAAAATT 1566939 35 100.0 35 ................................... AAATCTCGGAAGAACTTATTACAGAGTTGTCAGTC 1566869 35 100.0 34 ................................... GAAACCCGACATCCTCTTTTGAAAGCTCAGTTTC 1566800 35 100.0 37 ................................... CCACGATTTATGTCGAGGTCGTAAAGAGAGAAGGAAT 1566728 35 100.0 39 ................................... AAAGGCGAAGAGACAATTGTAAAGTCCTCTTCCTTTTAA 1566654 35 100.0 34 ................................... ACTTACTGTGCAATGGCGGCGAAGCACAAAACCT 1566585 35 100.0 34 ................................... ACGGAATTTTTATGATAGACAATGCTCCAAAAGT 1566516 35 100.0 37 ................................... TAAAAAATTAACTCCGTATTTGGGAAATGCCAAAACG 1566444 35 100.0 34 ................................... AACCTTATCCAAGAAAAAAGAAATCGCTGCTGGT 1566375 35 100.0 35 ................................... TTATATTTCCAAAGGAATACGGTGGCATAACCGAT 1566305 35 100.0 33 ................................... AAATATGGCGCTGTTTTGGGTCTCGAAAAAAGA 1566237 35 100.0 36 ................................... AGAAAATAAGGAGCGAATTGCAGAGGTTGGCTGAAA 1566166 35 100.0 36 ................................... TCAAAATCCTAAATAACGACCACCATGCCCAATATT 1566095 35 100.0 35 ................................... GAACGTGAAGAGAAAATTTATGACAGCCTGTTGGT 1566025 35 100.0 37 ................................... TAAATGCCAAAACCGTTATCACCGTGGTATTAAATTC 1565953 35 100.0 35 ................................... ATTACGACGATATGGAAGGGATTTATTCCATTGGT 1565883 35 100.0 37 ................................... TTTGCTAAACGACGGAACTCCAATCAAAAAAGAAACC 1565811 35 100.0 32 ................................... ATTCTTTTCGCACTTATTATTCCGGCAATAAT 1565744 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 27 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 3604039-3604851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072257.1 Bacteroides fragilis CL03T12C07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3604039 47 93.6 30 ...A......A.............................G...... TTGATAAATGCGAGTACGCAAACAAACTGT 3604116 47 100.0 29 ............................................... ATTCAAATTTTGTACATAACACAATTTTA 3604192 47 100.0 30 ............................................... AAAGACTACCGAAGCGGAAAAACAAAATGT 3604269 47 100.0 29 ............................................... ATAATAATACTCTAATGAACATCCGGGAC 3604345 47 100.0 29 ............................................... ACCAAACGTTTCTGGGGAGTAAAGTTCCT 3604421 47 100.0 30 ............................................... TTTTCCTGTTTCATTATTCTGTTTTGTTAT 3604498 47 97.9 30 ............C.................................. GTCCCTCATTTTCTTATAGACGTTCCACAC 3604575 47 100.0 29 ............................................... GTTTATATCAGTCAAGCGAAACTCTATCA 3604651 47 100.0 30 ............................................... TTCGTCTTTTTATCTCCGCATGAAGAAATG 3604728 47 100.0 30 ............................................... ATTTTGCGTGTACTATTTCCTCAGCAGCAG 3604805 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 99.2 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCTAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGCGTGTTAAATCAAGTAATAGGAAGAGAGGAAACAAAAGGAGAAAAAGAATTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTTACATAACATATTGTCCTTCAATAAGTTAAGAGTAAATTAGAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTAAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //