Array 1 1429593-1428097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH370351.1 Rothia mucilaginosa M508 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1429592 29 93.1 32 ...........A....T............ CAGGAAACACGACCTGGCGCCTGGCACTGATT 1429531 29 96.6 32 ...C......................... CGGCGCGGGTTTCGGTGCTGTAGAGGTCAGTC 1429470 29 100.0 32 ............................. CCCTCCGAATTGATGACGGCGGTAACGTCTGC 1429409 29 100.0 32 ............................. TCGATTGTGATTTCTGGTGAGCCTGGTGACGG 1429348 29 96.6 32 ...C......................... GTGGTGATGCCGAAATTCTCGCCGGCGATGAC 1429287 29 93.1 32 ...A........................C TGGCTCCAGAAGCCGCGGCGGGTACCTGCTTG 1429226 29 100.0 32 ............................. AGCGCGGCTTGGCTGACTGAGAATGGGGTGCC 1429165 29 86.2 32 ........A..A.AG.............. CCCGGGTAGTCTTCCTTCTGACTGCTGAGTGC 1429104 29 100.0 32 ............................. ACTTCAAATAGCTACGCTTAGGGCCCGGGTGT 1429043 29 96.6 32 ............................T CAATATTTTCATGCGATAACAGGATCTGGAAA 1428982 29 100.0 32 ............................. ACATCAGCGAGGGTAAGACTTCGCTGATGATG 1428921 29 100.0 32 ............................. ACATTCTTGAATGGCTCGAATCCGACCACGGA 1428860 29 100.0 32 ............................. GGCGCGGTTCCCTACACTGACGATACCGCCAA 1428799 29 100.0 32 ............................. GGTCTACCCCATATTCGGGAGTTGATGTCCCA 1428738 29 100.0 32 ............................. CCCTGGCCACGCTGCTTCACTCACTACGAGCC 1428677 29 100.0 32 ............................. ACTAGCTACTACGTCCTCACTCCAGAAGGTGA 1428616 29 100.0 32 ............................. GGGAAGGTCACCGGAGCGACTATCGCTAATGA 1428555 29 96.6 32 ......................C...... TCGTAATCCGCGAGCGCATCCTCAGCCAGCTG 1428494 29 100.0 32 ............................. AACGAGCGTGCCCGCGGCGTCGTGGTGGAGCA 1428433 29 100.0 32 ............................. GTCACTCGCTACCCGGGATATAACAACCGATT 1428372 29 100.0 32 ............................. CCGTGCTGACCGCGAACAGTGGTGCGTGCCTG 1428311 29 100.0 32 ............................. TTCCTTTACCGCCAAGGTGAAATTTCCCTGTG 1428250 29 100.0 32 ............................. AACGCATTGTCAGTCTGAATGTGGTTGAGATC 1428189 29 96.6 32 .........................A... AAGGGCGATTGCTGGAACATCGAAGGCGTGAA 1428128 29 75.9 0 ....C...T..AT...T.......TA... | ACG [1428104] ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.3 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CAGGCTCGCCCTGGTGAGAGCGCTCATTATGGTCGTCTGCTGGCGAAGCTGGAGAACGGGCAGGAGTGGGCTTTCCGTCTTGCCGCAAACCCGGTGAAGCGTCACACGAATAAGCAGACGGGTAAGCGTGAAGTGTACCCGCACGTGACTGTTGCGCAGCAGCAGGCGTGGATTCGTGAGCGCGCTCCGCAGTGGGGATTTGAAGTAATTCCCGCGGTTGAAGGTCAGGATATTGAGGAGTGCCCGATGGTTTCTTCTCGTCAGGACCTTGCATTTGCCCGCCGTAACGCTGAGGGCAAGGTCGGTAAGGTAACTCACCGTAAGGCTCAGTTTGATGGCGCTCTTCGCATCACTGATGTTGAGCTGTTCCGTCAGTCTCTGCTCTCCGGTATGGGCAGGGGTAAGGCGTACGGCATGGGCCTTCTGACGTTGGCGCCTCTGTCCCGATGAGTGCCGTGGAGCAGAGGGGGAGCTAATCTGTGCGGGACAATGTTTTGCTT # Right flank : CCTAATCCTCTCAAAATCAGGTTGTTTCAAACATTGAAAGATGTTCAGATGCTGGTGCCATGATTCTTCTTCGTCAGTAGTATGGTATATACCTTGCTATGTCGCAAGGCGCATATCTTGTGAAACAGGTAAGGATAAGCTCACCTCGTTTATCTACGATATGCAGTCCTGCATACGGATCCATGTTCTTCCGGGTTTGGCGAAGTAGCTACAGAGCGCAGATTCTGGCGTTGGCTCGTGATGAGACGGATATTCGCAAGGTTGCTAAGGGTCGCGCTCTGGTTCGTGATTGGCGTGACCAGGTGGCAGAAGTTCAGTTCACGTTCCCGTCGCGGACGGTTCAGGAGTTGCTTTCGACGGACCCGAACGCGACGAAGAAGAAAGAGGAGATGGAGTCATGATGAAGAAGAACGTAGCGTTGGTTGCTGGTGTGTTGGTGTTGGGTTTGGCTGGTTGTGGCCAGGGTGCTGGTTCGTCGGGGCAGAGTGTGTCTGATGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //