Array 1 796539-803259 **** Predicted by CRISPRDetect 2.4 *** >NC_020546.1 Bifidobacterium thermophilum RBL67, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 796539 33 100.0 35 ................................. CGCACATGGGCGCAACGAAACGAGTCACGAGACGG 796607 33 100.0 33 ................................. ACTTCGTTGCTCAGGAATCGTAGGTTGTCGGGG 796673 33 100.0 34 ................................. CGTGTCGATGAAGAATGTCGGGATACCTCTGCCA 796740 33 100.0 35 ................................. TTCGGATATGCCGCTGGTCTTTTCCGTGACTGATT 796808 33 100.0 33 ................................. CCCTCCAGAAACCGCATGATACAGATTAGCCGC 796874 33 100.0 35 ................................. ATACGTGGCCGAATCAGGGGCGACCTGAATGGCGG 796942 33 100.0 34 ................................. CTCCCTTTAGGATTCCTGTTGGATTGGTGTCAGC 797009 33 100.0 34 ................................. TTCGAATGAGCCGGATAAGGAATATGATTTTATC 797076 33 100.0 33 ................................. ATTGGTCGGGCGCGGTTGGGATTATCGTCTGAC 797142 33 100.0 33 ................................. AGCGCGTCGCTTATCCAGTCGCTTGGTGGTGAC 797208 33 90.9 34 ............................TG..A TCCGAATATCCGGGAAACCAGAAAGGGGCGGCGA 797275 33 100.0 34 ................................. TGTGTCACGTTAGTCGGCATCATCAGTCGCCTTC 797342 33 100.0 34 ................................. ATTACCAAAGGAATCGGCGCATAATGTCCTGCGA 797409 33 100.0 34 ................................. ACGCAGTCAATCGAAGATAAATTTAACAGTCTGT 797476 33 100.0 34 ................................. CTCTCGTGGTTATGGTTGAGCCTATGTCCTGCGT 797543 33 100.0 33 ................................. CTCGCATTGTCATTTTAATTACCTCCTTAGTTT 797609 33 100.0 34 ................................. TGCAATGCGTCAACGATCGCGTCAACGATATTAG 797676 33 100.0 33 ................................. GTGCAGGAAAGGTTTTACGATTCTGTGATGGCG 797742 33 100.0 33 ................................. ATGGCACGATACACGGCGTATCAGCAAGTGTTT 797808 33 100.0 35 ................................. ATGAGCCGCCGTCGAATACAAGATGATTAAGAGAA 797876 33 100.0 32 ................................. TTCTAATCTTGTAGTCCATCCTGCTGGTACGG 797941 33 100.0 33 ................................. GTTGACTGCACGGTTGGCAAGGTGGACGTGTTC 798007 33 100.0 33 ................................. CTCGATCGTCACCACGGTTAATGACCGGCTGAA 798073 33 100.0 35 ................................. ACAATATCTGCTATGACCCGGACGAAATCCCGCTA 798141 33 100.0 33 ................................. CTGAGCCGCATAGCCATATGAGATTAGACGCAT 798207 33 100.0 34 ................................. GGCAAGGTGGACGTATCCTCGGATATGCCGCTGG 798274 33 100.0 33 ................................. TCATACATGCAACGCATTAGCTCGTACCGCGCA 798340 33 100.0 34 ................................. TTTGCTTGGCTCCGCATTCCGCATCTGCTCGATC 798407 33 100.0 33 ................................. ACCGTACAACACGCGCATCGAATCAAAGTCATA 798473 33 100.0 33 ................................. ATGGCGTTACGGTTGGACGTTCCGAGCCTGTTC 798539 33 100.0 33 ................................. TTGGCGAACTTGACCACGAGCGGGACGCCGATG 798605 33 100.0 35 ................................. TCGCAGAATCTGAGTGGAGATATCCTCAGAGAATT 798673 33 100.0 34 ................................. TCCGCCTCGCGACGCTCCTGCTCGGTGACCTGCA 798740 33 100.0 33 ................................. CGGTGGGCGTGTTGACGCCTGCGGTGAGCGTGA 798806 33 100.0 33 ................................. GACTTCGACCACCCGGACAAGTCGCTCGCGTTG 798872 33 100.0 33 ................................. GCCGGGTTGGGGTTTTGCGACAACACGGTGATG 798938 33 100.0 34 ................................. CACCATCGCTTGTCCCTTTTGTTTCTCCCTCACA 799005 33 100.0 35 ................................. ATGATTTTCACCCCCTTCCAATCAGGGAACGGACA 799073 33 100.0 33 ................................. ATGATTTCCGCGATGTAATCCGCCATGCCGCTT 799139 33 100.0 35 ................................. AAAAGTGCCGTGCTGAAGTCGCCGGAGATGACCGG 799207 33 100.0 34 ................................. CTTTTCGCGTCCACATAGCGCTGATGCCGCGATG 799274 33 100.0 33 ................................. TTTTTTGAGGAGTGAGAACAGATGGATATCAGC 799340 33 100.0 33 ................................. GTGAAAACCTTGCATACGGACACGGATTATAGT 799406 33 100.0 33 ................................. GGGTCGCCGTTCAACCTGTGGGCGAGGCAGCGC 799472 33 100.0 35 ................................. ACGAGTGCTTGGACGATTGACGGCACTTTAAACAT 799540 33 100.0 35 ................................. TCGGTGAGCACTTGAATCGTGTACGCGCAGTCATC 799608 33 100.0 34 ................................. ATCGAGCCAGCGATAGGAGCGACATATTTAAAAG 799675 33 100.0 34 ................................. AGCTTGTGCGCCATTGGTGCGTTGCATGGTCTTA 799742 33 100.0 33 ................................. TAAAAGGACGGCAAAACGTATTTCACGCAATCG 799808 33 100.0 34 ................................. ATGGAGAGTGCAAGAATAGCTTAGAAATCGACCA 799875 33 100.0 34 ................................. ACGCTTGTTGCGTTCGACACTGCACTCGCACGCG 799942 33 100.0 34 ................................. ATACCCGCGTACAAGCGGACGACACCGCCGAAAC 800009 33 100.0 34 ................................. CAGAACGCCACATCCCCTTTCACGGGGCTGTAGT 800076 33 100.0 35 ................................. TGAAGCATCAGTGGTACTTTTAATCTCGCCTTTTT 800144 33 100.0 35 ................................. ACGTCCTGCGCGGCCTGGCTAACTCTCAAACCAGC 800212 33 100.0 33 ................................. ATCAGCGTATCCGACACGCCCTGATCGATGACA 800278 33 100.0 35 ................................. TGGCGGTATACGCAAAATGTGTGGCAGAAGCCGAA 800346 33 100.0 34 ................................. ATCATCCCCACCACGCGCCTCAGTCAGCTCATCG 800413 33 100.0 34 ................................. TCGGCGTCTGCCATGCGAACGCCGACCGGCTGCT 800480 33 100.0 35 ................................. CTTCGGCTTGACTTCGTCATCCACGGTTTGGGTCT 800548 33 100.0 34 ................................. GCAAAACACCATAGCGGTCATCGTGAGGAACAGC 800615 33 100.0 34 ................................. ATTACCGAAGGGATCAGCGCATAATGTCCTGCGA 800682 33 100.0 33 ................................. CGGTCATGCGACGGTGAACGTGCAGGTCGCGGA 800748 33 100.0 34 ................................. CTCCGCACGCCTCTCGGGAGACCATGCGGCACGT 800815 33 100.0 33 ................................. CCTAGTCCTTTCCATCAGCCGCGAGCAATGTCG 800881 33 100.0 33 ................................. AGCGAGCACCGTCTGTATCCATGCGGACCGGTA 800947 33 100.0 34 ................................. GTGTTCTTGAATGCGGAGCTCGCCAACGGCAGTC 801014 33 100.0 34 ................................. TTCAACGGCATAGGCCACAGAATCGCCGACAAGT 801081 33 100.0 36 ................................. CGAGATAAAGGGAAGCCGCTGGAGGACTTGCAGAAG 801150 33 100.0 36 ................................. CCGCTCGAGTCGAACCCGGAATGCTACGAGGCGAAG 801219 33 100.0 34 ................................. AAGCATGCCGGGTATCTCGCAACGTCATTAAAAC 801286 33 100.0 33 ................................. AATTTCACCTGCATCAGCTTGCTTGTGGTGTGT 801352 33 100.0 34 ................................. AAGACACTGAGCACCCGTGGAGACAGGCGTCGCT 801419 33 100.0 33 ................................. CAGTTCATCCTGTTGCGCGGCATGCCCATGCCC 801485 33 100.0 34 ................................. ACCGTGAACGGGCCCATGCCGTCCGGCGTGCGGC 801552 33 100.0 34 ................................. TGGACAAGGTACGTCTCAAGGGCACCGACGATTA 801619 33 100.0 36 ................................. ACGAAGTGGGCTGAGGAACACGCCGACGATCTGCTG 801688 33 100.0 33 ................................. GACGTGGACGGCAAACATTATCGACCGACAAGC 801754 33 100.0 34 ................................. ATGAACGAGATGGTGTTTAATGTGATTGACGCAC 801821 33 100.0 33 ................................. GACCTGAACGGGCCGGATCTTTTCGCCGACACG 801887 33 100.0 33 ................................. ACCACCGTCGCCCCACCGCCCGTGGTACGAAGC 801953 33 100.0 33 ................................. CCGCACATGGCCGTGTACTTCGCACAGAACATC 802019 33 100.0 36 ................................. CACCATATCTCAGCCGTGTTCATGTGGAAAGCGGGT 802088 33 97.0 37 ........A........................ GGCAACAACGGGTTTCGGCAACCCAAACCAGCGCCGC C,G [802101,802108] 802160 33 100.0 33 ................................. AAGAAACCACGGGTCGCAAGTCTTCGGCAGATT 802226 33 100.0 34 ................................. AACATTTTTCGTACCGAAATGCGTATGGCATCCA 802293 33 100.0 35 ................................. ATCGGGGGTGCAGGCTGATGGATATCAGGTCTATG 802361 33 100.0 35 ................................. ACAGTCTACGATGGGCATGAGCTTGCTGGGATTGA 802429 33 100.0 33 ................................. CCGGCGCACCCGTCGTAGTCGTGCCCACCGTAA 802495 33 100.0 35 ................................. AAACAGTTCGGCCGCAAACCGCACAAAGGCGACAA 802563 33 100.0 34 ................................. AGTCTCTTCTTCCAATCATCAGATTCAGCCATTT 802630 33 100.0 33 ................................. ATCTGTGAGCCGACTTCTTTCAGATTCTGCGAG 802696 33 100.0 34 ................................. CGCGCTTGCCGAGTACCAGCTGGTCTGGCTGGTG 802763 33 100.0 33 ................................. CAACAACGGCGTGAGTTGAAATAGTAGCAGCGA 802829 33 100.0 34 ................................. GAGCCGTCTGCATTATGATTCACGCGGTGTGTAG 802896 33 100.0 34 ................................. TTCGGACTTGTCTGTATCGACCCCGAGAATGCGT 802963 33 100.0 34 ................................. GCGTCACAGACCAAGCAAGCCGCTGCTGAAGCTG 803030 33 97.0 34 ........A........................ TACTATGGGTGCCAGACATCGCGCTGCGAGACGA 803097 33 100.0 33 ................................. TCTGCGGTGCTCGACATTCTCAGCACGCCAACG 803163 33 100.0 32 ................................. GGCAAGACCAGCGAACGCGAATACCGCATCAA 803228 32 93.9 0 ...........T......-.............. | ========== ====== ====== ====== ================================= ===================================== ================== 101 33 99.8 34 ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT # Left flank : CACCCGGGAATCTATCAGGAAACCGGACGGCATCGATGCCCTATTCCGCAACCGACCACACCTTCCAAAATGAACGCCACGACTGTTCAGAAATAGTGACGAAACCGTCCACATCTAAGTGAACACAAACAACGAGCCGGCAGATGCCCGGCAATCTGGTCGTTCCCATGTGCTTCCACCCGGTCGAGTATGTCACCACATATGCAACGAAATGGAACGTGTGAAGCAATAACTTTGGTCCCTATGCGCCTTCATGTTGCACCCTTTAAAAAATGAATAATGCATAGAAACTTATCGTTTGGTGCGAACCGATAGTTCTCATCCTGCGTTGGGTGTGCTCGCACCTTATTTTGTGTACTATTGGGGCATGAATCGAGTATTTCGACTTCACGGCGGTTTGAAAAATGGCAAAGTGTTCTAAGTTTGTCTTGCGCGCGGTATTCTAAATATGGCGATATGGGAACGTGTCCACATGTTGGATAAACTATTTCATTTTCGCC # Right flank : TCCCGGCTCTTGTACAATATTCGAAACGATGTTGAAAGAGGCGATGCAATGAACGGCGAAACTCTGAATGAGAGATATGAACGGCTGTGCCGCGAGTACGAGGACAAGTTCGGTGAACAGATTTATGGCGCTTTTCAGGTGGATCCGTACACTGAATGGGCGTGTGATCTGATCGAGCACTGCATAAAGCGTGGCACGCCATGCAACTACACGACCGACATCGGATTGACACCAGAGCAAGCGAAAGAAGTAGTGTTCTAAACGTCATAGCCGCCTTCGGGCGGCTTTTCTATTACCAAACCCCGGCAGATTCTGCTGGGGTTTCATGTTTTTGGCCGGGGCTAGTGCCCTACGCGCGGTTTCTCTTCTCAACCCGCCACTCACCTCCACCGCGTGTCATGGTGCGATCCCATGACCGGCCACGAAACCCGGTGCCGCACGGCTGCCGGATGGACGCCCGCACGGGCGGCAAGAAAAAAGGAAGGGGCACGAATGCCTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCCCGCATGGGGAGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //