Array 1 31684-29580 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVO01000028.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU405x NODE_28_length_55304_cov_13.1877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31683 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 31622 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 31561 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 31500 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 31439 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 31378 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 31317 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 31256 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 31195 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 31134 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 31073 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 31012 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 30951 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 30890 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 30829 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 30768 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 30707 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 30646 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 30585 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 30524 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 30463 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 30402 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 30341 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 30280 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 30219 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 30158 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 30097 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 30036 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 29975 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 29914 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 29853 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 29792 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 29731 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 29670 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 29609 29 96.6 0 ............T................ | A [29582] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49877-48446 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVO01000028.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU405x NODE_28_length_55304_cov_13.1877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49876 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 49815 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 49754 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 49693 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 49632 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 49571 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 49510 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 49449 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 49388 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 49327 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 49266 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 49205 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 49144 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 49083 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 49022 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 48961 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 48900 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 48839 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 48778 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 48717 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 48656 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 48595 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 48534 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 48473 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //