Array 1 11728-11482 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEY01000014.1 Neisseria meningitidis strain M39858 M39858_S12_cleaned_ctg_8053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 11727 30 93.3 46 ...........................G.C TTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 11651 30 100.0 38 .............................. CCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 11583 30 96.7 42 ..........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 11511 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 97.5 42 CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : CTGTTGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCTCGGCGTTCGCGGCGCGCCGCCCTGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGGGGGGCGCAGGCGCAAACATATTCATACGCTATTGTAATGAACAGTCAAAAGCTGCCCGAGGTAAGGAATGGGAGCTCCCAAAGCAAGCACCGCCAAGCTACCTTTATTGCACAATTTAGTGGACCAAAAAAAAACTCTATTTTCTCATTCAATAATACCGATAACGTTGTTGCTAAAAAAGACGGTACTGTCGTTTTCGGCACAGCGACCTACCTGCCGCCCTACGGCAA # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATCCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 26763-25275 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEY01000028.1 Neisseria meningitidis strain M39858 M39858_S12_cleaned_ctg_8081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26762 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 26696 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 26630 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 26564 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 26498 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 26432 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 26366 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 26300 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 26234 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 26168 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 26102 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 26036 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 25970 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 25904 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 25838 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25772 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 25706 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 25640 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 25574 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 25508 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 25442 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 25376 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 25310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGCTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //