Array 1 17129-18187 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADQUA010000007.1 Corynebacterium diphtheriae bv. mitis strain 01-18 NODE_7_length_121468_cov_45.853265, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	====================================	============================	==================
     17129	    35	  75.0	    28	AGGCACCC...-........................	TCAGCGGATTCCTTTTGGGCGCGGGCTG	
     17192	    36	 100.0	    28	....................................	GGCGGCGGCGTGGAAAATAGCTATTTAA	
     17256	    36	 100.0	    28	....................................	AACCCCAACCACGTTAAAGCCCCAAAGC	
     17320	    36	 100.0	    28	....................................	AACCCCAACCACGTTAAAGCCCCAAAGC	
     17384	    36	 100.0	    28	....................................	TCTCGGGAACGTTTAAGAAGCTGGATGC	
     17448	    36	 100.0	    28	....................................	AATTCGGCTATGAATTCCTCGCACATGT	
     17512	    36	 100.0	    28	....................................	TCTCGGGAACGTTTAAGAAGCTGGATGC	
     17576	    36	 100.0	    28	....................................	GAGGGAAAAAATGAGCGTTGTCGATAGG	
     17640	    36	 100.0	    28	....................................	GTGGCCTCCCACTTTTTCACAACCTCAG	
     17704	    36	 100.0	    28	....................................	TGCGCTACATCGGGGATCGCTTCTTTCA	
     17768	    36	 100.0	    28	....................................	GGTTTGACCAAGGGGAAGTCACTGCCGT	
     17832	    36	 100.0	    28	....................................	CCGCAAGACGCTGCTCCGAGCCAGCTAG	
     17896	    36	 100.0	    28	....................................	CTGACGAATGGCTGGGTGTCCTCGCCGA	
     17960	    36	 100.0	    28	....................................	CCTACCAAAAGGGATAGACGGCATGTAC	
     18024	    36	 100.0	    28	....................................	CTTCTGGCTCTGTCTCACGCTCGTCGTC	
     18088	    36	 100.0	    28	....................................	CGTCTACGATTCACCCCACCTATGCCGG	
     18152	    36	 100.0	     0	....................................	|                           	
==========	======	======	======	====================================	============================	==================
        17	    36	  98.5	    28	GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC	                            	       

# Left flank :   TTGATGCGTAGAGCGTCAAGGAAGATCACGGGGTAGAACTCTTCTAACTGACGGTTTTTACCACACCATTACTTCATCAAGTACTGCGTCAGTGACCGCGGAAATCGTCTCATGGGAGATGTCCACCCGCATAACAGTGGCCATATGGTGCCTGATATCGCGCACGGTCATCCCACTGGCATACAAGCTCACGATCATGTCATCGACATCCGTTAAACGCCTCGAGCCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCTTGGGGACGTCTACGGTAACTGGCCCGTCGTTGGGATCAACAGTCTTTAGGTAGGTGCCGTTGCGATAATTGTAGATCCCAGCAGCAGCTTTAGCTTCGCGATTTCAGCATGAGCAAGCAGCTTTTCCTCAGGTCGCGTCAATCTTGGCCTTATCAGCCGAGTCTCGTCTTACCACAGTAGTCATTCTGACTTATCTCCTTATGCGGAATAGAATCCCAAACACAAACCATC
# Right flank :  CAGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.20,-3.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.78   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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