Array 1 101284-99608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKBO010000006.1 Escherichia coli strain CAP43 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101283 29 100.0 32 ............................. TTCTCGACCGTTGCCCGTCACCGAAAAAAATC 101222 29 100.0 32 ............................. CTGCTGCTGATCCCGTTTGCGGCGTGATATAC 101161 29 100.0 32 ............................. ATGAAGGACGCTGGCAAAACAACGACAACCCC 101100 29 100.0 32 ............................. TCTCGCGGTTTACGGGCGAACCCGCGTTACTA 101039 29 100.0 32 ............................. GTGGGCGACCGCCGCCAGTTGGAGCTGGCGAC 100978 29 100.0 32 ............................. GATCGTGGGGTGGATGTGTTGCCACTGAGTCG 100917 29 100.0 32 ............................. TCTTGGTTAACACAATACTGAGGGCTTGATGT 100856 29 100.0 32 ............................. CGGGATAATTCAGCTTTCACATCACGGCAAGA 100795 29 100.0 32 ............................. GCATCTCTTCCACTTAAATCTCCTTGTTACGA 100734 29 100.0 32 ............................. GATTTACACATTGACCTAAACCGGATTCTATT 100673 29 100.0 32 ............................. TTGGCTAGATTAACGTGAATAGTATAAACAGC 100612 29 100.0 32 ............................. GGTTATTCAGGATGCCTTTAAGCCCATTCCCA 100551 29 100.0 32 ............................. GATATAGAGCGGGTACTCGAGCGGAGCGGGGA 100490 29 100.0 32 ............................. ATTTAACAAATATCCCGCGATTAATATGCGGA 100429 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 100368 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 100307 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 100246 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 100185 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 100124 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 100063 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 100002 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 99941 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 99880 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 99819 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 99758 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 99697 29 96.6 32 ............C................ CCGGCGAAGGACTTGCTCGTGTGGTTAAAGCC 99636 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127726-126964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKBO010000006.1 Escherichia coli strain CAP43 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127725 29 100.0 32 ............................. GCCTGCTCGTGAGTCCGCGGCGCGAACTGCCG 127664 29 100.0 32 ............................. ACGGCGCGTTCTTGAGTTCTGTATACTGCTCG 127603 29 100.0 32 ............................. GAATGTGGGGCGCTGCTTCATCGTCAAATTAT 127542 29 100.0 32 ............................. ATGGAAACCCGTCGCCTGGTTAAACAGGTTAT 127481 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 127420 29 100.0 32 ............................. CTGGCGGCGTTTCAAATGAGGCTGGAGGCATT 127359 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 127298 29 100.0 33 ............................. ATCACCCCGAGCGTGACGCCGTTCGCCGCGTGC 127236 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 127175 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 127114 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 127053 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 126992 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //