Array 1 3264258-3270310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT827015.1 Chryseobacterium phocaeense strain 6021061333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3264258 47 89.4 30 A..T...............G...................A.....A. TGCTCTGTCCACCTGTAACGAGTGCATGGC 3264335 47 97.9 30 ..................................A............ AGCAGTACAGCTATTTCGTTGAGTATTTAA 3264412 47 100.0 30 ............................................... GTGTCGTTAAAATCCCAGTCTATATAGGGC 3264489 47 100.0 30 ............................................... TATCAGCTGGAAAGATGAATAAAAGAGGTG 3264566 47 100.0 30 ............................................... TTTTTACCTTGTTTTGTGACGTTATAATTA 3264643 47 100.0 30 ............................................... TAACCAACTGTGTAGTTGTGAAATCTCCTA 3264720 47 100.0 30 ............................................... TTTATTAATAGACATATGTCAATTAGTTTT 3264797 47 100.0 30 ............................................... AAACCGGAAAATTAGATGAAGATGACGACT 3264874 47 100.0 30 ............................................... ATAAAATGAAATTTAATATCGGCGACTTAG 3264951 47 100.0 30 ............................................... GAATAGTCTCCTCGGAATTTTAATCGTTCT 3265028 47 100.0 30 ............................................... TATTTACATCTATACTGTTTACTGTATTGT 3265105 47 100.0 30 ............................................... ACTTTGTTTTAGTCTCAATTGCCAACATGG 3265182 47 100.0 30 ............................................... TGTTTTTCCTGAGTACAAAGACAAATTAGT 3265259 47 100.0 30 ............................................... AAGATTAATTGTCATCTGGCCGTCCAGAGA 3265336 47 100.0 30 ............................................... AAAGCGGAAACCCGGACCGCAATCTTCCGG 3265413 47 100.0 30 ............................................... TTTTAGTTTCATATTCCTTCATCGCTTCAT 3265490 47 100.0 30 ............................................... TCCCCCATAGAATTATATGGCAAGATTGGG 3265567 47 100.0 30 ............................................... ACGGCCTCGGCGTTTGAATCTTGCCATAAC 3265644 47 100.0 30 ............................................... CTTGCCATATAATTCTATGGGGGACAAAGA 3265721 47 100.0 30 ............................................... TAATCATGTTGCCAAGCTCTATTTCTGAGT 3265798 47 100.0 30 ............................................... CTACATGGGATATATCTGTGGAGGACTTAC 3265875 47 100.0 30 ............................................... TTTCTAAAACACGTCTTGCGGACGGATCTG 3265952 47 100.0 30 ............................................... CACAAAGGGAAACATGGAAACCTTCATTCC 3266029 47 100.0 30 ............................................... GAACTGGAATTATCCCTATTACTGGAAACT 3266106 47 100.0 30 ............................................... TGACGACTGAGCCAGGTCTTACCACCAATA 3266183 47 100.0 30 ............................................... ACAATGAAAGCCCATTTATAGGGTTTCATT 3266260 47 100.0 30 ............................................... TTAATGTAAGTTGTGGTATTCTCACATGTC 3266337 47 100.0 30 ............................................... TTAAAATTTTTCTAATGCTTGTTCTTTTGT 3266414 47 100.0 30 ............................................... CCATACATCTGCAGTACGGTAAAGCCTTTA 3266491 47 100.0 30 ............................................... TTTTGAGAATAAATATTGCTTTCAGGAAAC 3266568 47 100.0 30 ............................................... ACATCCCCAGGAGGGGTAGGATCTCCAAAC 3266645 47 100.0 30 ............................................... CTAACTTTCCGCCGTATGTATCTACTTTGG 3266722 47 100.0 30 ............................................... TTATGGGTAGCATGGAGTATAGCAGCGTTA 3266799 47 100.0 30 ............................................... TTAATGTATTTAGATTCCGGTTCTCCTGCT 3266876 47 100.0 30 ............................................... CTGATCCCCCGGCGTCCTCTCCTGCACCTT 3266953 47 100.0 30 ............................................... TTACTTCCCATTCAGGTAGTATGTTTTCTA 3267030 47 100.0 30 ............................................... ATTCGAGCTGCTTATTAGCAGGCTACGATG 3267107 47 100.0 30 ............................................... TGGAATCTATCGCTGTACTCCTCTGATACT 3267184 47 100.0 30 ............................................... AATGGTACAGTAGTTGTTTTAGTAGATGTT 3267261 47 100.0 30 ............................................... TCCAGATCTACTAATTCATCTGTATCTCTA 3267338 47 100.0 30 ............................................... TAAGGAAAAAAGCTGCCAAAACTTCTATTA 3267415 47 100.0 30 ............................................... TAATAGGAATACCGTGGAACGCCAATTTAT 3267492 47 100.0 30 ............................................... GTTCTTTTTGCTTGTTTGCCCTTTCGATGT 3267569 47 100.0 30 ............................................... TTGGAAACGATTGAATGGTACATTAAGCAT 3267646 47 100.0 30 ............................................... CATTCGTCCAGTTATCAATCGGCGTAATTA 3267723 47 100.0 30 ............................................... CATGCGATTATGCTCAAACTAATCAGTATC 3267800 47 100.0 30 ............................................... CGTCTTCGGCTCGCTTTCCCATAAACATCG 3267877 47 100.0 30 ............................................... GCGAAGGAAGAAGCACAGCTTCAATTCGAC 3267954 47 100.0 30 ............................................... ATGGAAGACGCACAGGATAAGCGAACCGCC 3268031 47 100.0 30 ............................................... AGAAATTCAGATCAGAAGGAACGGAAAATG 3268108 47 100.0 30 ............................................... AATAATTTCTTCGGATTGCAGCCGTACACG 3268185 47 100.0 30 ............................................... TTTTTTTAAGTTTTTCAGCGATGTCCATTG 3268262 47 100.0 30 ............................................... CATCCCATAACCCATTAACATATCGTGAAA 3268339 47 100.0 30 ............................................... TTGGATTACTGTCAGATGCTCTTCGAGATA 3268416 47 100.0 30 ............................................... TTGAAATGCCAGTAGATAAGCCCGCCCCGG 3268493 47 100.0 30 ............................................... AATGTTGACATTATGCCAAACCATCATATT 3268570 47 100.0 30 ............................................... ATGGTTTTTTATTTTATCATGGGAAAGATT 3268647 47 100.0 30 ............................................... AATATTGGCACGTCTACAGTGTCGCAAATT 3268724 47 100.0 30 ............................................... TGCCTGTCCAGATATATCGCTCTCCATGCT 3268801 47 100.0 30 ............................................... TTTCAGCACAAAACCATTTAAAAAGGGTGT 3268878 47 100.0 30 ............................................... TTACATTAGCGAGTGTCTGAGCTTGTTCCA 3268955 47 100.0 30 ............................................... ACCCTGTACGCTTCTACGTAATCCTCCTGC 3269032 47 100.0 30 ............................................... TGATGGCGTTGCGGATTGGTATGAGTGCGT 3269109 47 100.0 30 ............................................... CGAAATAACCCGCATTGGAAGTACACTACC 3269186 47 100.0 30 ............................................... ATAGCTTGTATTGTCTTGCTTATCAAAATG 3269263 47 100.0 30 ............................................... AGAATTTTCTGATAAATACCCGGAAACAGC 3269340 47 100.0 30 ............................................... CGATGTGGTCTACAAATATGAGCGATGCCT 3269417 47 100.0 30 ............................................... AATGAATATCAATAGGTATATGAATTTTGT 3269494 47 100.0 30 ............................................... AGTGGCTGAAGGTTTATATGCCGAAAGGGA 3269571 47 100.0 30 ............................................... TTATTTCAGATATGAAAAATATATAAATCT 3269648 47 100.0 30 ............................................... GCTTCTTTTTCGGTTCCCGGATGCGTTCCA 3269725 47 100.0 30 ............................................... TCACAAACCTTGCACCAGCATTCATTCTAT 3269802 47 100.0 30 ............................................... TTGAACTTCTGTTTATAGGTATACTTTCAC 3269879 47 100.0 30 ............................................... TGAAGCTTAAATTTCGTGACGTAAAATTGT 3269956 47 100.0 30 ............................................... TTTTCATAAAAATTAACGGTCAAAATATTA 3270033 47 100.0 30 ............................................... TTGAGGTTAAAAAGCTGCAAAATGAAGAAT 3270110 47 100.0 30 ............................................... ATTGATTGTTTTCGGGTGTGCTGGAATTCA 3270187 47 100.0 30 ............................................... ATCGCCATAATTCTTTGATACGCTTCTTTG 3270264 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 79 47 99.8 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTAGTGATCAGTCACAGC # Left flank : CAAAAATTTTCGGAGTGCCGGTAGAACCCGAAGTCTGCACTTTTACCCGATCACCATTAGAAAACCATTCCTCTAAAAAATTTTTGATACTATATTCAAAATCGGTTTGAAAAGATAAATTATTAATATTGAGATTATTGAAGTCTAGCAGCATGATTGTGTAAAATAAAAACCAGTGTAAATTTAAAAAAAAGTTTAAAAAGTTCTTGTATCTAGAGAAAAAAGCTGTAAATTTGCCCCACTGAAATAACAAAGACCCATGGTGTAGCGGTAACACTACTGATTTTGGTTCAGTCATCTGGGGTTCGAATCCCTATGGGTCTACAAAAGTCTTGTTAATCATTTGATTTTCAAGGCTTTTTTATTTTTCTAGTCAACACATAGTCAATAAGTTTATTTTTGAGATGATTTTAATAAATTCAAAATTTACATTACAGTCTTTTTAAGAATTTGCTTATCTTGGTCACAACAAAACATTAGATGACAGAACTTGACGCATT # Right flank : CCTCAAAACACAACCCACTGTTATTCAGTGGGTTTATTTCTTATTTAGGATTTGAAAATTAAAATAATTCAAGCTGTTGGAAGGTTGCTGGTGGCTCTTCTTTATTTCTGGCAAAAAAGATTTCAATGTCACCAAATTGTTTATCTGTAATACACATAATGGCTACTTTTCCGGCTTTAGGAAGTGCAAATTTTACTCTTTTAATGTGGACCTCGGCATTTTCTCGACTTGGACAATGGCGCACGTACATTGAGAATTGAAACAATGTAAATCCATCATCAATAAGCGCTTTCCGGAAACGGTTAACATCCCTCATATTAGCTTTGGTCTGAGTTGGCAGATCATATAGTACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCATTCATATCAGTTCAGGATAAGAGATCAGACGTTTTTCTCCTGTGTAGCATTTGTAAAGGGATGATGCAGTTGTCTTAACAGCAACTAACAAAAGCCTGGTTTTACCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTAGTGATCAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //