Array 1 58515-57942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEZ010000016.1 Enterococcus ureilyticus strain DSM 102981 Ga0454077_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 58514 33 100.0 35 ................................. TTACTTGCGCGTCACTTTACGTTAAGACAATCTTA 58446 33 100.0 34 ................................. TCTAAATTTAATAGTCCTACTGAAATACAAGTTT 58379 33 100.0 33 ................................. TTTTGTTTCTGTAGGTGCCGCTGCCGCTGCAGG 58313 33 100.0 34 ................................. GTCTCTATGTCTTCAAGCATGCACGTATCGATAA 58246 33 100.0 35 ................................. CTAAAGTGATGGGTGCTTTAGGCTTTAGCGCGAAA 58178 33 100.0 36 ................................. ATTATGATGCTCTATTAGGGGATGGTTGTTTCGATA 58109 33 100.0 34 ................................. CTAGTCAAAAAGAAACTTTAGTAAATCAACTGGC 58042 33 100.0 35 ................................. AGGAAATGGTACAACGTATGAATTTAATTGAAGAA 57974 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : CAATGATTTTGGTGGAATCAATCATTCGACTGTTGTGATCGGGAACAATAATAAAGTTACTAATGGGAAAAATCAAGAGATTGATTGGGCGCAATTTTCTACAGAAATTAGAACAATGTTGACACAGCTTCCCCAAAATAGTGAAGAATTTCAGGCTAGTTTGAAATTACTGATAGAATCTGAATCAAAAGATCAAGGGAAAGTTGCTACTTTTTTAAAGAAACATGCACCGCAATTTACTTCGGATGTGTTTAGCAATTTAGCAAGCGCAGTTCTTTCCGATACGATCAAGAAATTAATGTTTAATATGTAGTGAATAAAGTTAAGTGCTAAAAAAATGTGGGTGCGAACCCTAAGTGTACATGAAATAGCTGGGGGATCCGCACTGATTTTTACTGAGAAATGACTTGTTTTCAGTGTTTTTCTCATCGTAATCTCATCTTATAAGTTACTTTAGTTGGAAATAGAGTATTTTTTTAGAAAATCACTCTATTTTCACG # Right flank : CAGCTGGCAGATCATTAATTTCATTTGTTTCTTTCGGTCTCACTCTAACAAAAATACACTAAATCCTTAAAACCATCTAATTAAACAGATGGTTTTTCTATTTACGCTCATTATTTCTCAAAAATTTCCGTAAATAGCAAAGGAATTGAGTGGTCGCAACAACATTTTAAGAGGTATAATGAAAAAAGCGATAAAATAGATAGAAACGGCTATAGAAGATTCTAGAAGCGTTAAAAGGAGAGAACATATGATAAGAAATGAACTAAAAAAGAAAGCTCAAACCCATCTACATGGACATTACGGAAACTGGAGTTTGATTGCTATTTTACCTTGTGCAGTATTATTTATCTATTTCTTTTCTATAATTTTCCTGTTTCAATCGTCAGCGCACGTTAGTGATCCGTCAAATGATTATCACTCTTGGCAAGATGAGTATACTGAAAAATCGAACCGCACTTATTCTAACTATGAAAAAGGCTATGATGATGGCTATTCAGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42394-42223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEZ010000014.1 Enterococcus ureilyticus strain DSM 102981 Ga0454077_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 42393 34 97.1 35 .................................G TAAACTGCCAGATGGAAATAATATCATCCTGTTTT 42324 34 100.0 34 .................................. GGACAATTACCGTATTTTTCCATTAGTTTGATAC 42256 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 3 34 99.0 35 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : AGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGTTCAAAAAATGGGACTCGTCGTTTAAGAAAAGTGGCAAAAAAGTGCCAAGATTATGGACAGCGTGTTCAAAATTCTGTTTTTGAATGTGTTGTTGATGCGACGGAGTTAACGAAATTAAAGAAAGAACTGATTGATTTAATTGATGAAGAGCTGGATAGTTTGCGCATTTATCGATTAGGAAATAATTATCAAAATAAAGTAGAGCACATAGGGGCAAAGGAGAGCTTTGATGTAGAAGCGCCACTGATATTTTAATAAGAAAATTAAGTGCGAACCCTAAGTACACATGAAATCGCTAAGGGATCCGCACCAAAATTTAGCCATTTTTATTAATAAAAAGTTGTTCCTCTCATGGAAATTTAATTTTACAAGTGTTTTTTTGTGGAAAGGTGAAAATTTGTCGTATATTTTTGCTAATTTCACA # Right flank : TAGCTGCTTCAGCTGCCAAAATATCAGTTTTTTGAGCCTAGCTCTATAACAACTTCAAATCAAAAAAATCAAAATGAAGATTTTTTCATCATCTCCTGATTGACCTGACTTAAATTACTAGGTACTCTATAAAAAAGGCGGGTGGGAGAATGAATGAAGTAGTCATTTTATTAATAGAAGATGAAGCAAGCTTAGCAAATTTCATTTCGGAGGAACTTCGGTTTGAAGGGTATAATGTTCTTTACGCCTCGGATGGTGAACAGGCATTGGAACTATTTAAACAAAATCAAAAAAGAATCACCATGCTGCTACTGGACTGGATGCTGCCAAAATATGATGGGATTACAGTTGCTAGAAGGATTCGAAGAACTAGTCAAGTACCAATCATTATGATGACCGCAAGAGATCAGTTGACCGACAAAGTGACGGGTTTAGATGCTGGTACGGACGATTATATTACAAAACCTTTTGAGATAGAAGAATTATTAGCGAGAATTCGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 136875-139544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEZ010000005.1 Enterococcus ureilyticus strain DSM 102981 Ga0454077_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 136875 33 100.0 33 ................................. CATATTGGGACACTTGCGTTATCGTCGTTTGGG 136941 33 100.0 35 ................................. AAATAAGCAAAGCATTGAATTTATCAGTACACGAA 137009 33 100.0 35 ................................. ATTTAATGAAGATACAGGAGAAACTACTAATGGTG 137077 33 100.0 34 ................................. ATTTAATGAAGATACAGGAGAAACTACTAATGGT 137144 33 100.0 33 ................................. GATAAAATTGTTTCACCTGTAAATTTATATTGT 137210 33 100.0 35 ................................. ATAAGGAGAATAGTGGTTCCTTTCAAATACAACAT 137278 33 100.0 34 ................................. CGTATACATATAATTGTATAAAGTTTCCTCCTGC 137345 33 100.0 35 ................................. GCCCCCATTACAGAACTATTATTATCGTTACTAAC 137413 33 100.0 33 ................................. AATCACCTTATTTCGTTATTTATTATATCTTGT 137479 33 100.0 33 ................................. TCCTGTTTTAGGATTATCCCATGAATAATAAAT 137545 33 100.0 35 ................................. TAAAGACGAAAGTATTATAGTTAAAGGAAATGATA 137613 33 100.0 36 ................................. AAACAGAACGGATGGAAAATCATTTAACTATATAGA 137682 33 100.0 36 ................................. ATTAGATATAAATTCATCATATCCTTATGTTATGAA 137751 33 100.0 35 ................................. CATGTAAAAATAGACAGATTAACTGTTATAGCTTG 137819 33 100.0 36 ................................. CCTAACATGCGCAAGCTGAACATCGGGGATCTGGGC 137888 33 100.0 36 ................................. AAAGATAGCCAGCTTGTCGCATCGATGAGAGCGCAG 137957 33 100.0 33 ................................. TTTTTCTATTTGAGCTTGTTCGCTCAACGTTTT 138023 33 100.0 35 ................................. ATTTACAGGGTATTATATTGTAATGTACGCAATGA 138091 33 100.0 36 ................................. GATATAATCGTGTGCCGTTAAACCTAGTTTTTTGGC 138160 33 100.0 34 ................................. TTGTGTGATTGTACTTCCTGCTAAAGCATAAATT 138227 33 100.0 35 ................................. TGGAAATAGCGACATACAAAAATCTACAGAGATGT 138295 33 100.0 33 ................................. ACAGCAAACATATCCTTAAAATTATCAATACTA 138361 33 100.0 35 ................................. AGATGCCTCAACGCTTTGTACAGTTCCCAGTTTTG 138429 33 100.0 33 ................................. TTGAAAGTGCAAGCTAAAGCATTGACTGAACAA 138495 33 100.0 36 ................................. CAGATAAATACAAGTCTAAAACGTTGCTATGTAAAA 138564 33 100.0 35 ................................. CTTACGAGCGCCACCAGAATTATAGGATACTTTTT 138632 33 100.0 35 ................................. AGAAATATTTATAGAAAAGTTACAATCTATACATT 138700 33 100.0 33 ................................. AGATATTCTAAATTGCTTAATCATTTGGCGGTG 138766 33 100.0 34 ................................. CTTGTGCATTATCATTTCTTGTCATAATCATAAT 138833 33 100.0 33 ................................. TGTACCCATTCAACAATTGGAGCTAAGTCTACT 138899 33 100.0 35 ................................. TTGTTGAAACTCTTTTGACATAGGGAAAAACTCCT 138967 33 100.0 35 ................................. TCATAAAAGCCCTGTTATTTAATCGTGTTACTCAT 139035 33 100.0 33 ................................. AACGCTTAACAATGATGATTTTACGTATATAAG 139101 33 100.0 36 ................................. AGTACATAAAACATAGTGTTCCGCGTAAGGTACAAT 139170 33 100.0 35 ................................. AAAAAAATGATCGGTTATCTAAAAGAATTAAATAT 139238 33 97.0 34 ...............A................. TTTGATATTGAAACACTTATGTATAATAAAAGAA 139305 33 97.0 36 ............A.................... AATTCAGGTTCAAACGTGACAATCTCACAATCAAAT 139374 33 100.0 35 ................................. ACGGATCAGTTAAGCAAAGTGAAAGCTGATATCGA 139442 33 100.0 35 ................................. ATTTGCTTAAGATAATCAATTTGGGCTGCAACGCT 139510 32 87.9 0 .......................-TC..A.... | ACC [139532] ========== ====== ====== ====== ================================= ==================================== ================== 40 33 99.5 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGCAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCATTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACTCTCATGTAGTTTGGCAAAAACGAGTATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAATAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGATTTTAGTTAAGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : TCTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAACGATTTATTTTAAAAGATAGTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGTAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACAATCCAAAGTTACAAACACGATGGACATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 205685-205921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEZ010000005.1 Enterococcus ureilyticus strain DSM 102981 Ga0454077_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 205685 33 100.0 33 ................................. ACTTTATACGTATAATTTTGACGATGAAGACTT 205751 33 100.0 36 ................................. TATATTATTTACCTTGTTAGTTAGCTCTGTTAAATC 205820 33 100.0 36 ................................. TAAAAGTGGTATTGAGGTAGAGAAAATAACAAAAAC 205889 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TTATGACAAATGCGCAAGCAGGTGTAAAAAAGATGACGATCAGCGCTGTACATGCTGGAAAGATATTTGTTGATATTTTGGGAAATAATACAACAAAAGTTATTTTAGATGAGGCAGGTGCGGGGGATTTTCCAGTGAATGGTGGAGAAATTTCTATTTATGTAAATGAAGCTATTGTAGAACGATTACGTAATGGGTATGATAATGGGATTAATCGGAAGGAAGAATCTATATAAGTATCAAGGTGCTAGGAGCCAAATAGAGCGTGACTTATGACAAGATTGTGATTATACTATATATAAGTGATATAAGTGAAAAGCCATTTGTTCGCATTGAGATTCGGTGCGAACCATAAGTGCGCATGAAATCTCTGGGAGATTCGCACCAAATTTAGAGAGGAAAACAATATAAATAGTTGTTTTTTCTCATCGAAATCACATTTTAATGTGATTTATAATGTGTAAAAGAGCAAATAGGTACAAATTTGCTGTCTTTTCACG # Right flank : TATCGGATGCCATCTGCATTCAAAATATACTAAATGTCTCACTCTTTATTGAGTGATTTTTTTTATTTAACTTACGCGTCTATCACTAAAGAAAAAAGCAACACACGATCATTTTATTCTCTTAAAATACGAACTTAAAAAAAGAAAATATGTTCTATAAATTCCATCATTATTAAAGAATTTTCCAGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCACGACAAAAGGAAGCCGTTTTACATACAGAAGGGCCTTTACTGGTTATGGCGGGCGCAGGTAGTGGGAAAACAAGAGTATTAACACACCGCATTGCCTATCTAATTGAAGAAAAAGATGTTAATCCATGGAATATTTTAGCAATCACTTTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAATTACTAGAAGTTGGCGGAAATGATGTTTGGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //