Array 1 39496-39014 **** Predicted by CRISPRDetect 2.4 *** >NC_002935.2 Corynebacterium diphtheriae NCTC 13129, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 39495 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 39433 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 39369 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 39305 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 39241 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 39177 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 39113 36 100.0 28 .................................... ATGGAATTGTTTTTGAGTGTTGAACCGC 39049 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 96.9 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 2306022-2307638 **** Predicted by CRISPRDetect 2.4 *** >NC_002935.2 Corynebacterium diphtheriae NCTC 13129, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2306022 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 2306083 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 2306144 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 2306205 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 2306266 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 2306328 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 2306390 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 2306451 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 2306512 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 2306573 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 2306634 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 2306695 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 2306756 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 2306817 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 2306878 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 2306939 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 2307000 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 2307061 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 2307122 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 2307183 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 2307244 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 2307305 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 2307366 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 2307427 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 2307488 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 2307549 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 2307610 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //