Array 1 370285-371345 **** Predicted by CRISPRDetect 2.4 *** >NC_016808.1 Pasteurella multocida 36950, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 370285 28 100.0 32 ............................ TTTAAAGGTCTTCATTTCACCCGTCTGTAAAT 370345 28 100.0 32 ............................ TACCTCTTCTTCACTTATACACTGTAAAGCTA 370405 28 100.0 32 ............................ TTTTCCGAAAACGAAATCGTTAATAACTCATC 370465 28 100.0 32 ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 370525 28 100.0 32 ............................ TTTTTAACTTGTCAACAATTATTTAAAATTAA 370585 28 100.0 32 ............................ TTCACCAGTAGCTACAAACAGCATAGCTCTGA 370645 28 100.0 32 ............................ TTGTGTTGTTGTTGTTGTTAATCTTTATGATA 370705 28 100.0 32 ............................ GCGAGTGGGACACTACATAGAGCTAACAAAAG 370765 28 100.0 32 ............................ AGTCTTTTTAGTTTGTCAACAATTATTTTAAA 370825 28 100.0 31 ............................ ATTTTAGTTCCTTGTGTTGTTGTTGTTGTCT 370884 28 100.0 32 ............................ TAAGGAGGTATTAGAAGATGAGCGCGGATAAC 370944 28 100.0 32 ............................ GAGAGTGGGACACTACATAGAGCTAACAAAAG 371004 28 100.0 47 ............................ TTTAGTACATTCTAGTCTAGTAACCGTCTATAACCTAAGCTTGAAAT 371079 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 371139 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 371199 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 371259 28 100.0 31 ............................ GTTAAAGCTAAGAAACTAACGGATATTGCGA 371318 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ =============================================== ================== 18 28 99.6 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1603671-1595901 **** Predicted by CRISPRDetect 2.4 *** >NC_016808.1 Pasteurella multocida 36950, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1603670 28 100.0 32 ............................ TTAATTATCCTATTCTCTACTGTTAATTAGCC 1603610 28 100.0 32 ............................ AACGGATGACCGCACGCAAATGATTAGCGTCT 1603550 28 100.0 32 ............................ TTGATTGTGTCCGTGCACTGTAAAATCATAAT 1603490 28 100.0 32 ............................ TATACCGTCGGAGCTTAGGACGGGGGAGAGTA 1603430 28 100.0 32 ............................ TCCCCTTCATCCAGACCGTACAACGTTTGAAC 1603370 28 100.0 33 ............................ CTTTAGAAGGCTCTTGGGATTGAAGTGTCTTAA 1603309 28 100.0 32 ............................ TGAAAAACAATATATAGAAGTAACAAGTGGTT 1603249 28 100.0 32 ............................ AGAACACTTCGATAAAGACACACATGAGCTTG 1603189 28 100.0 32 ............................ CTAATGACACACTATCCCCTACCTCTTCTTCA 1603129 28 100.0 32 ............................ TGAATGGTCTGTAAGTCGTGGTCGTTTACTGC 1603069 28 100.0 32 ............................ AACCTCAAGAGACTAAAGGTTTTGCTTCTCGA 1603009 28 100.0 32 ............................ TTGAGACTAAGAAGAAGTGGAAGACCGTTATC 1602949 28 100.0 32 ............................ TTCAACACGAGCTTGTTCTCGAAGCTCAGCTC 1602889 28 100.0 32 ............................ CACCGCTATAATAAGGTAAATCTAACTTCTCA 1602829 28 100.0 32 ............................ TAAGTCAAACCCTCTGTTAGCTGTGTAGATTT 1602769 28 100.0 32 ............................ AATTATTAAGAACGTTATAAGCGTCTGTTTGC 1602709 28 100.0 32 ............................ TGTTATGACTTTATCATACGGTGCCACAAAGT 1602649 28 100.0 32 ............................ TTTTGAGATTCCGTTTGAATCTGTAAAGCTTC 1602589 28 100.0 32 ............................ TTTATAAATAAGGAGACGCAATGAAGCAGAAT 1602529 28 100.0 32 ............................ TAAAAGACTGATATATTATAGACAACAAGTTA 1602469 28 100.0 32 ............................ TTTATAAGTTGACATTACGAAAACAGCCTCAT 1602409 28 100.0 32 ............................ GATTAGAAAGCGAAGCTTGTTTTATCGAGATG 1602349 28 100.0 32 ............................ ATCTCCGCCACTCAAAAAATCTTCTAAATAAA 1602289 28 100.0 32 ............................ GTTGGTGGTCTGAACAAGAGTCACCATTCCAG 1602229 28 100.0 32 ............................ ACAAGGCGATGACATCATGAAAGGTTGTCTTG 1602169 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 1602109 28 100.0 32 ............................ TCTTCTTATTTATTATCTGCATCTACTGTCTT 1602049 28 100.0 32 ............................ TTGAAGCCATCGAAGTGATTGCACGTAACTGT 1601989 28 100.0 32 ............................ TTAGTCGCTTCTTTTTTACTTTGTGGAGACTC 1601929 28 100.0 32 ............................ AGTCTGTTGTTAAATCTTTACAAGAACGGGGC 1601869 28 100.0 32 ............................ GAAATACTCTTGCCATACCGGGAAATAGTCAG 1601809 28 100.0 32 ............................ TTATGTTTGATATGGATGACGCTGGTCGAAAA 1601749 28 100.0 32 ............................ AGCCCACTCACTTGGCGTACAGTTACGTGCAA 1601689 28 100.0 32 ............................ ACATATCAATTGTAGTCTCAGCATCTGAAGAA 1601629 28 100.0 32 ............................ TAGTTACTCATCTAGTTACTCATCTAGTTACT 1601569 28 100.0 32 ............................ AAAAGCTAACCATTCGCGCGCTAATGACTTGT 1601509 28 100.0 32 ............................ TTAAAGACTCAGACCGCCGAACCCCTCAGTTA 1601449 28 100.0 32 ............................ TCATTGTTTAAGTGAATCTTTGTATCCACTAG 1601389 28 100.0 32 ............................ ATCGACTTTGAGTTGTCCTGATTTTATATGAC 1601329 28 100.0 32 ............................ AGCAGGTCGCTTTGGAACTCGAATCAGTCACG 1601269 28 100.0 32 ............................ AATCTCCTGTTCTCGCACTGCTGAATATTTCA 1601209 28 100.0 32 ............................ AGAAAACTTCGATAAGAACACACATGAACTCG 1601149 28 100.0 32 ............................ TTCTGTGATGACTATTTTCTTACCACCATTCC 1601089 28 100.0 32 ............................ TATCCGTCACCTTCACCATGTCGTAATGCACA 1601029 28 100.0 32 ............................ AGATGAGTAACTAAGGTTGACTATCTGTCGAT 1600969 28 100.0 32 ............................ TATGAGCGTAAAATCCACATTAACATTTTAGG 1600909 28 100.0 32 ............................ TTTAAGTACAAATGAATATGATGACTTAGGGG 1600849 28 100.0 32 ............................ ACAAAGTTTGGCTTTCGTGACCAAATTTTAGA 1600789 28 100.0 32 ............................ AACTATCCCGTATCACTAAAGATAGAGGAGCA 1600729 28 100.0 32 ............................ AGATGAGTAACTAAGGTTGACTATCTGTCGAT 1600669 28 100.0 32 ............................ AATTTAAAGATTGGAGAAACGGGCTGTGTTCA 1600609 28 100.0 32 ............................ AGATGAGTAACTAAGGTTGACTATCTGTCGAT 1600549 28 100.0 32 ............................ GCATGAAGAAAGAAGACTTATGGGGTCTAGTT 1600489 28 100.0 32 ............................ GTTTAATTCAATCCCCCCAACACCCGAGAGAA 1600429 28 100.0 32 ............................ TTGTCCGCTTGTCCTAGTCACTTGTAGGCTAC 1600369 28 100.0 32 ............................ AATTCATACACGTAAGAATCGGAACGATGTTT 1600309 28 100.0 32 ............................ TGCACAGTTAGCACCGTGTACTTTCAACCACT 1600249 28 100.0 32 ............................ TTTAGTCATCGTCTATGATTGTTGACTTATTG 1600189 28 100.0 32 ............................ TTGTCACAGATGACATCTTTTGTCTCAACGCT 1600129 28 100.0 32 ............................ CGCTTAGGAGTGGAATTGTTTGATGAAAACAA 1600069 28 100.0 32 ............................ TGTTGGTAAAAAGCTTACAGAGGTCTTGATTA 1600009 28 100.0 32 ............................ ATTATAGCGGTGGGGACATGGCGGACTATACA 1599949 28 100.0 32 ............................ ATACATGAAAGAGTTAGGGAGAACACAAAAGG 1599889 28 100.0 32 ............................ AATTGTTAAGAACGTTATAAGCGTCTGTTTGC 1599829 28 100.0 32 ............................ ACTCGATAACAAAGAGGAGTCTTTAGTAGGCA 1599769 28 100.0 32 ............................ TCTACAAGGAACTAGAAGACAATCGTGGTTAT 1599709 28 100.0 32 ............................ AATCAGAGCTATGCTGTTTGTAACTACGGGCG 1599649 28 100.0 32 ............................ TATCTCATACGTCTGGTATTCAAAGCGAGAGG 1599589 28 100.0 32 ............................ ACGACTTACAGACCATTCAGGGCATCTTAAAG 1599529 28 100.0 32 ............................ TCATAAGTACTCTCAAAGTTACTCAACAAGAC 1599469 28 100.0 32 ............................ TTGTGTTGTTTGTTAATCTTTATGATAAGCAC 1599409 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 1599349 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 1599289 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 1599229 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 1599169 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 1599109 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 1599049 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 1598989 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 1598929 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 1598869 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 1598809 28 100.0 32 ............................ TCCCTCCAAACAACCTCGTCTAATTAAATTAT 1598749 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 1598689 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 1598629 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 1598569 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 1598509 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 1598449 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 1598389 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 1598329 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 1598269 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 1598209 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 1598149 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 1598089 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 1598029 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 1597969 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 1597909 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 1597849 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 1597789 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 1597729 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 1597668 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 1597608 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 1597548 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 1597488 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 1597428 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 1597368 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 1597308 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 1597248 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 1597188 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1597128 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1597067 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 1597007 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 1596947 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 1596887 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 1596827 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1596767 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1596707 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1596647 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 1596587 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 1596527 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 1596467 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 1596407 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 1596347 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1596287 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1596227 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1596167 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1596107 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1596047 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1595987 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1595927 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 130 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //