Array 1 4421-192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXHB01000177.1 Xanthomonas oryzae pv. oryzae strain IXO792 contig_177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4420 31 100.0 34 ............................... AATCGCCTCGTGCGCGAGCGCTACATCACGCCTA 4355 31 100.0 34 ............................... CTGAAGCGTCTATCCCGGCACGTCAGCCCGTCAA 4290 31 100.0 35 ............................... AGAGCTGTAGCACATATGGCCGATCTGCCCGAACA 4224 31 100.0 34 ............................... TGGAAGCCCTTGATGATCGCCTGCGTGTCGTCCG 4159 31 100.0 35 ............................... TTGTTGCGTATCAATGCCCCTGTTCCGTCAGCATC 4093 31 100.0 35 ............................... GAAAAGAGGGCAGCACCCATGAAGCGATGGATAAA 4027 31 100.0 35 ............................... CTCAATGACGTTATTACTCTCATCGATCCATTGCA 3961 31 100.0 33 ............................... AGGCATTGGTATCTTCCGAAATCAGCCTAGGCA 3897 31 100.0 35 ............................... GCACGTCAAAGCACGCCCGCGCAGATACAAGATTT 3831 31 100.0 36 ............................... ACTGAGCTGAGTGCAACCTGGGAAGTATCCGGGCCG 3764 31 100.0 33 ............................... TTCACTGGTGACAACATACGCAGTAACACTCCC 3700 31 100.0 35 ............................... ACTAAAGTAAACGCGAACTTTGCGGATGTGCAGGC 3634 31 100.0 34 ............................... GTGCTGGGCATGGAATGAGCAACCGTACCCGTAG 3569 31 100.0 35 ............................... GCCTTCGTTCGATGCAAATGGAATTGCAACAGTAG 3503 31 100.0 36 ............................... AGATGTTGTCAGGACTATGACATACGAGTCAGCAGT 3436 31 100.0 36 ............................... TTGAATCCTGGGGATGTGTATGCAACCTCGCCGGCA 3369 31 100.0 34 ............................... TGTACTCTTCCTTGACCCACCGGGGCGCATCCGC 3304 31 100.0 34 ............................... TGGCACTATTGCTGATGTGGTTGGGTTTTTAACT 3239 31 96.8 36 ..............................A AGGTCTGCCGTGACTGTGTAGACCTGCTCCTGCACC 3172 31 100.0 35 ............................... ACTTTTGGCTAGATTATGAGGCATGGGTATTGCAC 3106 31 100.0 35 ............................... ATCGTATGACTCTTAAAAAGGATGTGCCACCCGGC 3040 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 2973 31 100.0 34 ............................... AATATTGCACAAAGGACAACAGGTGAGACGGCAC 2908 31 100.0 35 ............................... GTGCCTAGGGTCTTCCCAGCGACGCTCGGCACATC 2842 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 2776 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 2709 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 2644 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 2579 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2513 31 100.0 34 ............................... AATGCCCTTGCTTCAGATAGACAAAGCGATGCCG 2448 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2383 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2317 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2252 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2189 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2125 31 100.0 33 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCAC 2061 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 1997 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 1931 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 1866 31 100.0 34 ............................... GAGTTGTTACGCGCCTGGCGCCCCTTGGACAGGC 1801 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1735 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1670 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1605 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1539 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1472 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1406 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1337 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1271 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1207 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1141 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1077 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1012 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 947 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 881 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 813 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 747 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 681 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 615 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 550 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 484 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 418 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 353 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 288 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 222 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 65 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //