Array 1 134707-133153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHMP010000002.1 Pseudomonas aeruginosa strain SK014 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134706 29 100.0 32 ............................. CAGCTCATCGAGTACAGCAACGTGCTCAACAA 134645 29 100.0 32 ............................. TAGTCATAACGGTCATAGTGCTTAGACGACAC 134584 29 96.6 32 ............................A CCGACACCTACACCTCGACCAAGACCGGGGAA 134523 29 100.0 32 ............................. CGCTGCTCCTGCTCTGCCTGATCCAGGCCGCC 134462 29 96.6 32 ............................C GCAACGCCTCGTCGAGCGACGGCAGCGCGCTG 134401 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 134340 29 100.0 32 ............................. CCACTGGGTTACCCCGTATTGGTAGAGGGTTC 134279 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 134218 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 134157 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 134096 29 100.0 32 ............................. TGCCGGTGGCGGTGCCATGCCGGGTGCCGACG 134035 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 133974 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 133913 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 133852 29 100.0 32 ............................. CCATGAAGGGTTCCTTCCGCGCCGTAGAGCAG 133791 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 133730 29 100.0 32 ............................. CCCGCGCGGCAATAAGGTGAAACTGGGAGACG 133669 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 133608 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 133547 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 133486 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 133425 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 133364 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 133303 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 133242 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 133181 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145188-143878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHMP010000002.1 Pseudomonas aeruginosa strain SK014 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145187 29 100.0 32 ............................. CAGCCGTGCATATCGCGCTGGATGTGCAGGGC 145126 29 100.0 32 ............................. CAACGCTTGGCGCGCTGCGAGGCGCTGGCGAA 145065 29 100.0 32 ............................. ACGATCCCGACCGCCAAGATTGGCCGTCGCCG 145004 29 100.0 32 ............................. GCTTGGATTCTTCTGCGTATGCGAAGCCGCAC 144943 29 100.0 32 ............................. ACGATGGCGTCCAGCAGGGTCGGCTCGATGTT 144882 29 100.0 32 ............................. AACGCGATATCGGACAGCGAACCGCCAGCGTG 144821 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 144760 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 144699 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 144638 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 144577 29 100.0 33 ............................. ACTGGTACCGCGCGGGCAATCAGCGAACCCGCG 144515 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 144454 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 144393 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 144332 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 144271 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 144210 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 144149 29 100.0 32 ............................. CTGCGTGTTCACGCCGAAACCCTTGGCTGGGT 144088 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 144027 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 143966 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 143905 28 79.3 0 A..........A..C.....-..A....T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGTCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGAAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //