Array 1 288813-291932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRD01000014.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN024719 CFSAN024719_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 288813 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 288874 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 288935 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 288996 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 289057 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289118 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289179 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 289240 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 289301 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 289362 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 289423 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 289484 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 289545 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 289606 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 289667 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 289728 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 289789 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 289850 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 289911 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 289972 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 290033 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 290094 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 290197 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 290258 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 290319 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 290380 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 290441 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 290502 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 290563 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 290624 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 290685 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 290746 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 290807 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 290868 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 290929 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 290990 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 291051 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 291112 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 291173 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 291234 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 291295 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 291356 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 291417 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 291478 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 291539 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 291600 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 291661 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 291722 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 291783 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 291844 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 291905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 51 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308478-310887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRD01000014.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN024719 CFSAN024719_contig0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 308478 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 308539 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 308600 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 308661 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 308722 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 308783 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 308844 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 308905 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 308966 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 309027 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 309088 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 309149 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 309210 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 309271 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 309332 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 309393 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 309454 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 309515 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 309576 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 309637 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 309698 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 309759 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 309820 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 309881 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 309942 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 310003 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 310064 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 310126 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 310187 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 310248 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 310309 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 310370 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 310431 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 310492 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 310553 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 310614 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 310675 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 310736 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 310797 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 310858 29 100.0 0 ............................. | A [310885] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //