Array 1 150184-151127 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBP01000010.1 Pectobacterium versatile strain A67-S18-O15 Pectobacterium_sp._A67-S18-O15_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150184 29 100.0 32 ............................. CTGAAAGAGCGTTACGTGGATATCGCCGTACC 150245 29 100.0 32 ............................. TGGATGTACACACAGGCGCAGGAAACGCGCGC 150306 29 100.0 32 ............................. GGAGGACAAAAATATAATAATAATTACCCATT 150367 29 100.0 32 ............................. TAGCTGGTGCAATGATGGCAGTGAATCCACTG 150428 29 96.6 32 ............................T TGGGGGGAATAACATGTCGAAAACAACAACGT 150489 29 100.0 32 ............................. ACTGCGGGCTATCTTGTTGGCCTTGCCCCAGA 150550 29 100.0 32 ............................. TGAATATCGCAGCGCAAGGGACGGCGATGCTG 150611 29 100.0 32 ............................. AGTGGTGTGCATGGGATCATGGGGGTTTAGAT 150672 29 100.0 32 ............................. CACACGGCGCAGGTTTAATTAAATGGGTTGAG 150733 29 100.0 32 ............................. TTTTCCCGTATGAAATTGGTTGCCAATGGCAC 150794 29 100.0 32 ............................. GCGCAGAAGGTTGTCACTATGACAATCTACGA 150855 29 100.0 32 ............................. ATAGTCCAGCGTCCTTTTTTCCTCGTATTTAA 150916 29 100.0 32 ............................. TTAAAAGCGGAATGATGCTGAGAGCCGCGTTC 150977 29 100.0 32 ............................. CACGGTGCCTGGCGAAATCAGCGACCCTGCAC 151038 29 100.0 32 ............................. TCGGGACGGCGTTTTTTCATCGCGCCCCCACT 151099 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 124570-124299 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBP01000012.1 Pectobacterium versatile strain A67-S18-O15 Pectobacterium_sp._A67-S18-O15_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 124569 27 89.3 32 T.........-...G............. AGTGCCTCAGCGAATGGTGGAGGAACAGCGTT C,GA,T [124552,124563,124566] 124506 28 100.0 32 ............................ CGCAATCAGGATGACGCGCTTAAAATGGTCGC 124446 28 100.0 32 ............................ AGAGGCAATAGTTAGCGCTCAGGAGTCCACCA 124386 28 100.0 32 ............................ GTTAATTAGAACTCGCAATGCCAGCGATTCAG 124326 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGAGATACTGGCGCAGGTCACCGCACTGCGCCAGATAAACGTCGGGTTGATGCAGATATTCATCAAGCACACCTCGGCGGCGCTAACGATTAACGAGAATGCTGACCCCACGGTGCGGCAGGATTTCGAGAGTTTCTTTAATCGCTTGGTGCCGGAGGATGAACCGTACTACCGCCATACGTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTCGGCAACAGCCTGACGATCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGTATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACGCCAGCGACGCATCCTGATAAGCATCTAGCTGCCTGTACGGCAGTGAACCCTCAGAAAGCTGATCTCAACCAAGGCGCATGTTTCTAAGCTGCTTATACGGCAGTGACCTTGGTCGGAAAGTCCGAAATCTTCATGGGTTT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //