Array 1 34107-33163 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOG01000011.1 Levilactobacillus brevis strain MCC633 NODE_11_length_38107_cov_82.884560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34106 29 100.0 32 ............................. TGGTAAGTGGGCTAAGGGAGCTTTTAAGTCGG 34045 29 100.0 32 ............................. CTCCTTCTCGATTCCAATCTCAACATCACTCG 33984 29 96.6 32 ............................C CGGTTATTTAAGGGAAAAAGCAATCCTAGATA 33923 29 96.6 32 ............................C AGGGAGATTGCGGACAGACAGGTGGAAAATGC 33862 29 100.0 32 ............................. CAATTGAGCGCATGGATTAGTAAATATCCAGA 33801 29 100.0 32 ............................. AGCGGCATATGATGGAAATACTACAAATCAAT 33740 29 96.6 32 ............................C TCCCGTTTCCCATGCTGTGATCATTAACAAAA 33679 29 100.0 32 ............................. TTTGTATAATTTTTAAAACTATTACTTTTTGA 33618 29 96.6 32 ..G.......................... AGGCTTGATCAGCAGTTTTTCCTAACATGAAG 33557 29 96.6 32 ............................C ATTTACTCGATTCTGTCTGGTAAATGGACGAA 33496 29 100.0 32 ............................. CAAAATGTTGCGATTACTGATAAGGGTGTTTT 33435 29 100.0 32 ............................. ACATTGGAAACTGGCTTGAATGCCCTCTTAGC 33374 29 93.1 32 ........A...................C ATCGTTAATACCATCTTGAGCAATGGACTTAA 33313 29 100.0 32 ............................. GGATTCGGTGCTTCTCGTTCATTCGGTAGCCA 33252 29 100.0 32 ............................. AGTCTGAATGATAATCTACGGACAAGGTACGG 33191 29 89.7 0 .......................A..GG. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : GTAAAGGATGACATCATTTCAATTGGTGCGGTCAAACGGGTACCGGGACAACCAGAGGATTTATTTGATAGTTTAATCAAGGCTGAGCGAGCTATACCGGAGAATATTACAGCTTTGACCGGACTTACGGCGGAAATGTTAGCGACACAGGGGATTAGTTTATCGGCAGGACTACAAGAGTTACGTGAATTTGTTGGTTCCTTACCGATTATTGGTTATAATCTGCGGTTTGACGAAATGTTTCTAACAAGCGGATTTAGAACAATTAATCAGCCAGAATTAACAAATCGGCTGATAGATTTATTACCGGTGATGAAGAAGGCTGATAAGTTTCTGGATAACTATCGCTTACAAACGGTATTAGCTAAATTTAATATAGTGAATCAGGAACCCCATCATGCCCTGGCAGATGCGAAAGCTACTTTTGCGCTCGCGGACAAACTCATTGAAAACCGGGTTTTGAAAATTTAGGAATCCCGGTATGACGGCGATTTTTTAGT # Right flank : TATCAAGGTTTTTAGATGCTGAACAGTGTCTCGTATTTCCAGCAGATGGCAGAATTCGTATTTAAAGATTCCAAATAGAAATATGACCTTTTACATGGCGCTCCGTTCTTAAGGAGATATCGGTTGTTCAGAAGCGTAAAAAGGAAACTAGCTCCCAATCCGATCAGACCAGTGTTAGTCGTCGCGTATGGTATACTGGTGAAATTAGAAATCGCTTAATCCGGCTGTATGCCCACCGAATGAGCATTTTTCGGGCAAATAAACCACCAAAAGAAAGGATCATCACGATGTCAATTTTAAATTATGCGGAGCAGGCTTCATGGTCAAATGGGTTTGGTTTCCAACAATCACCGATTGATCTACGTCAGGCTAAACCCACTAGTGTTACTAATTTTATGGTGACAGATCCATGGATAGCTGACCGAGAAATCGATGACCAAGTGACCATTCAGCTTGCTGGTCACGGGACAACGCGAATCAATGAGATGACTTGGCATTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12488-12700 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOG01000114.1 Levilactobacillus brevis strain MCC633 NODE_124_length_93190_cov_72.004456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12488 29 100.0 32 ............................. GACTATGGAACCGGGGTTGAGGTTAACTTAAA 12549 29 100.0 32 ............................. CATCATTCCGTGCTTCATGGTGTAGCCTCCTA 12610 29 96.6 33 ............................C CAATCAAAAATGGCCGTCAATCCGTCTGTATCC 12672 29 82.8 0 .............A....A......A.GG | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.9 33 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : TAGTGTCAAAAGGTAGTCACGGTACTTTGGAACAGGCTAGTGATTTGGTGGCCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCAGTTGGATAGATGATTGTTAATCAAGTATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAACGAAAATGCTGGTATATCAAGGATTCTTTAGTGTATTCCCCACATGTGTGGGGGTGATCCCAACGCAAGCAACGACCACAAGCACCACTAACTAGTATTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCAGGGACTAAGGCATTCATGACCTCAGCA # Right flank : GAGACGTTTCAAAAATGATTGTAATGCTGCGCTTAAATCAAAATAGACTTTTTATGGAAAGATAGTTGATAGAGCAGACCACCCAAGTACTAGCAGGCCATGGTGATGGGATACAGGTGTTGATTGATTTTGCACGAGGACATTATCAAAAAAAGGATCGGCGTGAGATGAACTCATCGAGGAGTTTATCGGGTATTCAGGCACGGGGACCGTATAAATGAGGCTAACTGTCAAGAAGTAAAGTGCTGGTGGTTGACAAAGTTAATGGCTCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTTTCAATGTCCAAGATTGCTAAGGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTAAAACAAGTTTATTTAGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8-463 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOG01000120.1 Levilactobacillus brevis strain MCC633 NODE_131_length_6095_cov_76.319931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 ............................. TAGAAAAGAATTTAACGGATTCTGGACATACT 69 29 96.6 32 ............................C AAAATCCCGAATATTAAGAAGTAACTCCCGAT 130 29 100.0 32 ............................. CTCTTGCACATCAGAATCATAGGTCATAATCT 191 29 100.0 32 ............................. ACAATGCCGCTCTGGCGGACACAGAGCAAGCG 252 29 100.0 32 ............................. GAGTTAATCGCATTCGTTGACCCTTCCACGTG 313 29 96.6 32 ............................C AAACGCCATGATCGGCCAATCACAGTTGATGA 374 29 100.0 32 ............................. CGGAGATACGGCCACACAAGTGCATACCGAGC 435 29 93.1 0 ..........................GA. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ATAAATGG # Right flank : TTAATGAAAATTAATGATGATGTTTTTATATAAAAGGTATAAGATTAAATAGTACAAGGCGTGTATACGGTTACATGAAAAGAATCAAGTTTAGCAATTATAAATCAAATGTTAAATAGGGTATGAAATATTTTGTAGGTGTCATTAGTTGATTTAAGCTAGTAAATTCGGTTATCTTAGTAATCATAAGGCGAATACCTAGCATTTAAATCTGTTAGAGAAGGGATGGTTATGTATGGAAGTGTCTAAATCCGTAGCGGCTTTGTGGGCTAAGAAAAGCTCAACCGATACGCAACAGTACTGGCTTCCGCTAATTTCCCATCTAATCGATGCGCGAAACACCATTAACTGGTTATTCAATCATTGGCTCAGTGATGGTCAACGGCAATTATTAATGGGAACCTTGTCAGAAGAACAAACCCAGCAACTTGTTAAGTTTGTTGGGTTTGTTCATGATCTGGGAAAGGCCACGCCGGCATTTCAGATGAAGCAGTCCTATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //