Array 1 17-1318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOM01000516.1 Mycobacterium canettii CIPT 140070005 isolate STB-G, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 17 24 100.0 34 ........................ GCGCTATCCGGTGCCGGACCGGGCGCTGGGGTGC 75 24 100.0 37 ........................ GGGTGGCCGGCAGCGGGTGGTGCCGATCACCGCGTGC 136 24 100.0 37 ........................ CTGGTACTCACGTTCGGTCCAGGACGCTTTGCAGTGC 197 24 100.0 37 ........................ CTCGAGGTGGGTGCGATCCAGCACCAGCACCCGGTGC 258 24 100.0 37 ........................ CAAGGACAAGATCGCCCAAACCCAGCGCGCCTAGTGC 319 24 100.0 37 ........................ GGCGTGCGACCCATCGGTGATGGTGCCTGTGGTGTGC 380 24 100.0 37 ........................ GAACAGCCTGCTTCGCTAAGCCCGTCTTGATGTGTGC 441 24 100.0 37 ........................ GCCTTTTCGCCAGCGCCGGCGTGCTCTCGATCAGTGC 502 24 100.0 37 ........................ TCGGACGACGAAGGCGGCGGTGGCGGTTCTGGCGTGC 563 24 100.0 37 ........................ GGTGGTCGATCGCCTCAGCTGTGAGCCGGGCGAGTGC 624 24 100.0 37 ........................ GGTCAACCGTTACGCCGCCTTGCGGCCTCGATGGTGC 685 24 100.0 37 ........................ TCGATTTCGGTCACCGCTTGGTTGTCGGTGGTTGTGC 746 24 100.0 37 ........................ CCAACTGTCGCTGTCCCGTCATCGCCAGCTGTCGTGC 807 24 100.0 37 ........................ TGACATGGATAGCGCGCCAACGCGGCCGCCGAGGTGC 868 24 100.0 37 ........................ TTTGTTGGGGTGAAGACTTCGATGCCGGGGTGGGTGC 929 24 100.0 37 ........................ TAATCGCCCCGGCCTCTGACCGTTCGTCCACCAGTGC 990 24 100.0 37 ........................ TGGCGGTAGTTCGCGCCACGTTGAGATATAGGCGTGC 1051 24 100.0 37 ........................ GGCGCCGATCGTCGCAGCGCCCACCGGGATAGTGTGC 1112 24 100.0 37 ........................ TCGACTGTGATAGCCATCGTCTTGCGTTCCGTGGTGC 1173 24 100.0 37 ........................ GCGTTGGCATGGCTCACCCCGGCCGACGTGTCCGTGC 1234 24 100.0 37 ........................ GTGAAAGCCACCAGCGGAACACTGACATTCACCGTGC 1295 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 22 24 100.0 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : CTGTTCCATTTGGTGCT # Right flank : TCCCCCGCGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18675-20406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOM01000374.1 Mycobacterium canettii CIPT 140070005 isolate STB-G, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 18675 24 100.0 37 ........................ CGACACGATGCTGGCGCGCAATGCGCGGCGGTGGTGC 18736 24 100.0 37 ........................ TGATGTCTGCGACGAACTGCTGTAGCTGCTGGAGTGC 18797 24 100.0 37 ........................ TTGCGGAGAGACGGCGGTGAACGCGCTGCCCACGTGC 18858 24 100.0 37 ........................ GATGGTGCGTTTGGATTGGCCGTCGTCATAACCGTGC 18919 24 100.0 37 ........................ CTACACGAGACTGTCTCAGTGGGCATACGACAAGTGC 18980 24 100.0 37 ........................ TAGACGGGAACCGTGACGGCGCTATCACCACCGGTGC 19041 24 100.0 37 ........................ CACTGTAGGTCACTAGCCGACCCCTCTCTGGACGTGC 19102 24 100.0 38 ........................ ACAATCGAGCTGCGTCTATTGTGTTACGCAGGAAGTGC 19164 24 100.0 37 ........................ TATCCTCGACCTCCTCGCGCACCCGCTCGGGGAGTGC 19225 24 100.0 37 ........................ GCACACCGCAAACGCCACAGCCGGTGACGTGCTGTGC 19286 24 100.0 37 ........................ GATCGCCAGCAACGCAAACCCGTAGTGAATCGTGTGC 19347 24 100.0 36 ........................ GCACCGACCGCCCGTCCGAATCGATCCCGAACGTGC 19407 24 100.0 37 ........................ TCAATCGACCGACACTGAAAGGAAACCTCCGATGTGC 19468 24 100.0 37 ........................ TCGGTTGTGGCGTCTTTGAATCCGTGACTGGTTGTGC 19529 24 100.0 37 ........................ GATCCGCCCGACCACCCTGCGCGACTACCGCGCGTGC 19590 24 100.0 37 ........................ TGGGCGGAGCGCGGACACATCCGCGTCGGCTACGTGC 19651 24 100.0 37 ........................ ATAACAACGTAGGGGCGCACGAAATTCAGCCCCGTGC 19712 24 100.0 37 ........................ TCGCTGCCGCGTCTTGGGTAGCCGCACCTTGTCGTGC 19773 24 100.0 37 ........................ GCAGTTGATCACCCATTCGCAGTGCCCGGTCGTGTGC 19834 24 100.0 37 ........................ GCAGGCTGTTCTTGGCTGGTTGTTTGTGACTGTGTGC 19895 24 100.0 37 ........................ GGTACAGGGTCGCCGCCGCCGAACCACCAGATCGTGC 19956 24 100.0 37 ........................ GCGGCCGCAGATGACTGCATCCGGGTAGGCTACGTGC 20017 24 100.0 37 ........................ GACGTTGGTTGCGCGACCATCACATCCGCAACCGTGC 20078 24 100.0 37 ........................ TGTTCTCGAAGAAATCGTTTGTCCATTCAGGCAGTGC 20139 24 100.0 37 ........................ GCATGGTTTCGAAGATCAGGGGACCCGCGCAAGGTGC 20200 24 100.0 37 ........................ CAGATTTGGAGGCCGCTGATTTCAGCTAGCTGTGTGC 20261 24 100.0 37 ........................ GCTGCGCCACCGGTTTGCGACTCGCGGGTACGCGTGC 20322 24 100.0 37 ........................ GGGACTTGGCGGCGGCGCGGATGTTGGCCGCGGGTGC 20383 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 29 24 100.0 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : GACTTTTGACCGTTGTCGTTCTTACCGCCGTACCGCCAGGCCTACGAGGGCACTTGACTCGCTGGCTGCTTGAGATCAGCCCCGGGGTGTTTGTCGGCCACATCTCCGCGCGCGTCAGGGAGCTTATGTGGCAGCGCATAGTCGAATTCGTTACCGATGGGCGAGCTTTGATGGTTTACACCGCCCGCAACGAACAACGACTCGCCTTCAAGGTGCACGGCCATGATTGGGTTCCGGTTGACTACGACGGTATTTCGCTCATGCGCCGCCAGACGGTTCCCGATTATGTGCGAGCCAACCGACCGATCGGTGATGCGGTCAATCGCCTGCCACAGTCTGCCAGGGGCCAACCTATGGGAACGGCCTCAGACACCGTCTGGAAGCGCCGAAACGCCCGCAAGAAGTTCAAACGCAAGGCGTGACCAATTGGCATGTCGTTGCCGGCCGAATGAGCGAAATTTGTTGGTAAGATGAGCAATCGCCCTGGTCAGGAAGTGTGC # Right flank : TCCCCCGCGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17-3396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOM01000515.1 Mycobacterium canettii CIPT 140070005 isolate STB-G, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 17 24 100.0 37 ........................ TTCCGCAAGGTCGACGCCGACAAATACGGGGAAGTGC 78 24 100.0 37 ........................ GTCATTACGCCAGGTGCCGTCCAGCGCGAACGGGTGC 139 24 100.0 37 ........................ GGCGACCCGCTCAGGCTTACCCCCGGCCTTGTCGTGC 200 24 100.0 37 ........................ GGGATCGTCGCAGCTACTATGCCGCTGCGCTGGGTGC 261 24 100.0 37 ........................ TTGTCGCGCCGTCGGTCGATGCCACGCTGCACCGTGC 322 24 100.0 37 ........................ TCACACGCGAAAGGCTCGACATGGAAATCCTCAGTGC 383 24 100.0 37 ........................ TTCGGAGGCGGCCCAGGTCCATATGGTGGATACGTGC 444 24 100.0 37 ........................ TCAACTTCGATTCCGCGAAATTCACGTCCCTCCGTGC 505 24 100.0 37 ........................ GTTCGCGCCCACATTCAGCCCAGCTAGGGCGGGGTGC 566 24 100.0 37 ........................ CCAAGACGCCCGAATACAAGCATCCTCGACGACGTGC 627 24 100.0 37 ........................ GCCCGCCCGCAGCGGTCTCACCATTAGCAGCAGGTGC 688 24 100.0 37 ........................ GGGCCTTGGCCGCTGCGCGGATGTTGGTCGCCTGTGC 749 24 100.0 37 ........................ GTCGAGCATGGCCGGAATTGACTTGTCCCCCAAGTGC 810 24 100.0 37 ........................ TGATCTCATCAACGCCGGCATGTGCGCACTTGAGTGC 871 24 100.0 37 ........................ TGGGAGCACCGCGTCGAAGCGGCCGCAGATGACGTGC 932 24 100.0 37 ........................ TGTCACACCGTCGCAGCTACTATGCCGCTGCGCGTGC 993 24 100.0 37 ........................ TTGAAGATGGCGAGGTTGATCTCGTTGCCGGAGGTGC 1054 24 100.0 36 ........................ TCAGACGGCCGCACTTATGATCTCCCTGAGATGTGC 1114 24 100.0 37 ........................ CTGTATGAGGCACAGATGGCGTACCACACGGTGGTGC 1175 24 100.0 37 ........................ GGATTCGGTGCCGACTGTTTCACAGACCTGTTCGTGC 1236 24 100.0 37 ........................ TTCGCAGATCGTCATCAACGCTCCGTAGGCCAGGTGC 1297 24 100.0 37 ........................ GCGGCCGAAGAGACGCAGGTGGCCGTCGTCGCAGTGC 1358 24 100.0 37 ........................ CGAAGACGCCGTGGAGGAGCTGCGGGACCACCTGTGC 1419 24 100.0 37 ........................ TCATGACGCGATCTCGAATTGAGGCATGGGCAAGTGC 1480 24 100.0 37 ........................ ATTACTGTACACCCGGTTGTACACAGTCGCGAGGTGC 1541 24 100.0 37 ........................ GCCCTACACGAAGCCGTCGGCAAACGCCTCATCGTGC 1602 24 100.0 37 ........................ GCCTTCACCGATGTGATCAACACCATCATCGAGGTGC 1663 24 100.0 37 ........................ GGGATCGTGGCCGCGTTCGGCAGGCCCCTCGACGTGC 1724 24 100.0 37 ........................ GCTGGTCACCGCCGGCTACCGGGTCGTCGCGTTGTGC 1785 24 100.0 39 ........................ GCCAAACGTACAGGAAAGGATCCACACTGATGGGTGTGC 1848 24 100.0 37 ........................ GCTGACCCAACTGGCCGCACGCCTACACGACGCGTGC 1909 24 100.0 37 ........................ GCGGCCCAGCTTCTGCCCGCAATCCCGCTGGGAGTGC 1970 24 100.0 37 ........................ CCGAGTTGATGTATCAGGTACCGTCACTGCGCAGTGC 2031 24 100.0 37 ........................ TACATTCTCCCGGCGCTTGGGGCGCTGTTCGGGGTGC 2092 24 100.0 37 ........................ GAGGCGATTTCCCCGTGGGTCGACTGGCCGGAGGTGC 2153 24 100.0 37 ........................ GGCACTGCACTCGCAGCGGTCGCGCAGATGCCCGTGC 2214 24 100.0 37 ........................ CTATTTTCGGCGCACACACCCAATACCCAGTGCGTGC 2275 24 100.0 37 ........................ AGCGGCAGTGCAGACTATGGAGTCTAACCTTGGGTGC 2336 24 100.0 37 ........................ TTCTTTAACATCGTCTCGTTTACCGTTGAGCAGGTGC 2397 24 100.0 37 ........................ CACGTTCCTGGCGGGCTTGGCGCAGGCGTTCAGGTGC 2458 24 100.0 37 ........................ GCTAGAGCTGTAGATTGATCCGCCCGGCTGCCCGTGC 2519 24 100.0 37 ........................ GATTCCGCGCACCGCCGGGCGTCGCGGAGTGGCGTGC 2580 24 100.0 37 ........................ GTCGAATTCTTTTGGCTTGCTGAACCCGTACTCGTGC 2641 24 100.0 37 ........................ TGCGTTGTGGATCGCATCTGGCATTCGCTGACCGTGC 2702 24 100.0 36 ........................ CAAACCCCCCGCCCCGCCCCGCCTTGCCCCCCGTGC 2762 24 100.0 38 ........................ ACCGCCCCTGCCGAGGGTTTCCGGGATGCGATCAGTGC 2824 24 100.0 37 ........................ GATGGTCGATCTGGCGATCGGTGAACTCCTCAGGTGC 2885 24 100.0 37 ........................ GGCTCAACATGGGCGTGGAAGTCGGCTGCGAACGTGC 2946 24 100.0 37 ........................ TCCAGAGGTCGAAGTGATGTTCGGTGTTCTCCTGTGC 3007 24 100.0 37 ........................ GCACACAGCAGCAACTCGCGCAGCAACAAGGATGTGC 3068 24 100.0 37 ........................ TGGAGAGACTCGGCTGCGGTCAGCGCCTCCTGAGTGC 3129 24 100.0 37 ........................ CCAGACGGCCACGCCGTCACACGTCACGCACAAGTGC 3190 24 100.0 37 ........................ CCGTGGAACAAAGCGTTCAGGATCGCCTCGAAAGTGC 3251 24 100.0 37 ........................ TTGGCTGATGGAACCGGTGCGCGATGCTATTGCGTGC 3312 24 100.0 37 ........................ TGCTGTGAGAAATATTCCGGCGTCTTTGTCCTCGTGC 3373 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 56 24 100.0 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : CTGTTCCATTTGGTGCT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [11.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //