Array 1 722288-723800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015416.1 Pseudoalteromonas luteoviolacea strain S4054 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================ ================== 722288 28 100.0 32 ............................ GAAGCGGGTGTGATTGTGATAAGCCGTGTCAC 722348 28 100.0 32 ............................ AGAAGCATCCCCTTGCTCTAAAGATTCTAACG 722408 28 100.0 33 ............................ GTTGAAATATGGCAAGCAACTTTTCTAAACCCA 722469 28 100.0 32 ............................ GTATCAAAAGCTGCCAAAAGAAGTTCAAGGTC 722529 28 100.0 32 ............................ TTAAAAGCTTCTATCAGTAACTTTGACATGGG 722589 28 100.0 32 ............................ TCGCGCATTAGTTACGGTCTTGCCTTCGCGTA 722649 28 100.0 32 ............................ GCTTATGGTTCGGCCAGTCTTTCGGTCAATGC 722709 28 100.0 32 ............................ AGCATGTCATCAGACGAAGCCTTGGGGCTTTT 722769 28 100.0 32 ............................ TAGCAAATACAAACGCACAAATTAAGCATGGT 722829 28 100.0 32 ............................ AATTTCTTCTGCAGTTCATCTGCTAGAACCGT 722889 28 100.0 32 ............................ AACATGAGCTGGATTCAACTTGATGATGCCGT 722949 28 100.0 32 ............................ AATCAAGGTAAACAATGACTGCCAGCGCGAGT 723009 28 100.0 32 ............................ AAAATTAAAGAAGAACACGAGAACATTATTGT 723069 28 100.0 32 ............................ TGACAGTCCATTCAAAGCATATGGAGATGTAC 723129 28 100.0 32 ............................ AAACTGTTTGACCATGGTACAACTGCATGTGC 723189 28 100.0 32 ............................ TAACAAAAGAACTGCAGGAGTTAAAGGAAAGC 723249 28 100.0 32 ............................ TTTGCCGTCTCCGTTCATATCGCTGTCTTGAT 723309 28 89.3 106 .........................GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCCCAGTATTGGAACTATTCCG 723443 28 85.7 106 ............G............GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCCATGTTGGAAAAATTCCG 723577 28 96.4 32 ............G............... ACATAACTAAAATGCAGTCGTCTGCTGCAATG 723637 28 85.7 108 ....................G....GTG ATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAACTCTGTAATAGCTTTGTACACTA 723773 27 67.9 0 T.........-C......G.T...CGTG | A [723795] ========== ====== ====== ====== ============================ ============================================================================================================ ================== 22 28 96.6 43 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGACATAGACTACTCAAGGAGAAATCATGAAAAAAGTACTACTCGCTGCGGTTAGTTTTTTAGGAATGAGCGTAGCAGCTATGGCGGCAGACACACAATCGACTACTGAAAATCAAACTTTAAAAGTGGATGGCGTTACATCTGCCACATATCCAACGACCCCAACTATTTTAGATCAATTGATCCCAGAAAATGCGTGTCAGGCTCGTTGCTTGTATGAATATGAAGCCTGTAGTAAGTGGGCACCACCTTGGACAGATTGTGAATACTATGTTGAGCGTTGCTTGAGAAATTGCGCATCAAAATAATAGGCAATTTTAAAGGTCGGTAGAGCGGCCTTTTTTGTTTAGCCAGCAGGGTATTAAAAACCCTTTTTATTTTTGTTGAACAGTAGAGTATTTAAAATCAATAAGTTATAAACCACCTAAAAAAGAAGGTTTTTTTTACATTATTTTGTTAGGTGTTTGTATTCAAATGTTTTTGTGTTAGAAATTTATA # Right flank : GTTTGTGAAGAATTTTAGGGTCTAACGTGAAGCTGCTTGTGCAATGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAATGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGGTAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 724349-725037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015416.1 Pseudoalteromonas luteoviolacea strain S4054 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 724349 28 100.0 32 ............................ GTAGTAATCCCACCTGCACCTTTAACATCAAG 724409 28 100.0 32 ............................ AGGATATATCAGCAGATTTGCGTGACGCGAAC 724469 28 100.0 32 ............................ AGTAGAGAAACAGACCCATGCTGTGCGATTCT 724529 28 100.0 32 ............................ TAATTGTTGTGTTTGTGCCGTACCAAATTCGA 724589 28 100.0 32 ............................ AGACAGCTCAATTCAAAAGTGGAAGACTTTGG 724649 28 100.0 33 ............................ TCCGCTAAATGGACAGTAAGTTCCTTTTGATAT 724710 28 100.0 32 ............................ GGTTAAATGGTTTTCAAGTAAGATGGAGGGCG 724770 28 100.0 32 ............................ ATAAGGGAAATTGACCAGATAATCATACAGAC 724830 28 100.0 32 ............................ TGTTGTATCAGCAACGAATGAAATGCTTGATA 724890 28 100.0 32 ............................ TTTATTCTCTCAAGCACAAAAACCTATGTTGT 724950 28 100.0 32 ............................ ACATGACAAATTCACTGGTTTTATTCCAATAG 725010 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 CTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAATGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGGTAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGCTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTATCTTTTTTGATTTACTCTATA # Right flank : ATTTAACAGTCCATGGTCGTTAGCGGCTTTCAACTCCGTGTTGGAAATATTCCGGTTCACTGCCCTAAGGCAGTTTAATGCATCCGTGATAAAGTGTTGGTCTAACATGGAGTTGCTTGTGCAATGCAGTGACAATGGATCCTGATATTCATGAGGATGACGAGTGTAAGATAGTGGTTTTTTCCTCAACAGATTGTTGTAACTTCACTTTTTTCATTTATTCTTATTTTACTGCCGTGCAGGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTACAACTCTGTACTAGCTTTGTACACTATTTCACTGCCCACAGGCGGTTTAACGTGTTTGTGAAGAATTTTAGGGTCTAACGTGAAGCTGCTTGTGCAATGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 725940-728428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015416.1 Pseudoalteromonas luteoviolacea strain S4054 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 725940 28 100.0 32 ............................ GTTGAAGAAATGGGCGATTTAAGCCGTCACTC 726000 28 100.0 32 ............................ GCCCATCTAGCACCAGCCTAAAAATGTATTCA 726060 28 100.0 32 ............................ TCTGCAATCTCGAACTGCTCGTGTCCATGCTC 726120 28 100.0 32 ............................ TAAATAATCCAATTCTGTATCCGTTGCCTTGG 726180 28 100.0 32 ............................ AGATACCCCTGCAAACTCGCCATTCATTTCGA 726240 28 100.0 32 ............................ ATTATGCGATCCCCAGTATTTGGTTCTTAATT 726300 28 100.0 32 ............................ ATTCTTGGCACTAGCACACCATGCACACACAA 726360 28 100.0 32 ............................ AATAACGCGACCACAATCACCGTTGCAATTGC 726420 28 100.0 32 ............................ GTTATCCAGCTCAGTTGTCGCTGCTTGCTGCG 726480 28 100.0 32 ............................ ACTTCGAGTCTTTGCTGTCTTGCATATCTCGT 726540 28 100.0 32 ............................ ACAAAAGGATAAGCAAAACGCAGTAACCACTT 726600 28 100.0 32 ............................ ATAAAATCATGCACATTCATTCATATGGCATT 726660 28 100.0 32 ............................ GTTCACAAATACATTCGTAACGTCTGTCAGTT 726720 28 100.0 32 ............................ AACTGGGTTTATAGTCCGACAATCACCAAAAT 726780 28 100.0 32 ............................ GCATGCTGAATTAGCTCATAACGTGTTGGTGA 726840 28 100.0 32 ............................ GCATGCTGAATTAGCTCATAACGTGTTGGTGA 726900 28 100.0 32 ............................ CCGCGTGTTGCTTGGGCAAAGCGAAAACAGCA 726960 28 100.0 32 ............................ GGGATGAATCACTTGCCGTTCCAAACCTAAAT 727020 28 100.0 32 ............................ GTATAAGCGCGCAATGTCTAGCGCGCTCAATT 727080 28 92.9 32 ...........TA............... GATGGTGGCCAAAGGCATTGCGATGGTCGGCA 727140 28 92.9 32 ...........TA............... TGATGTGGGCAGCACCACACAAGGCACTTGGC 727200 28 92.9 32 ...........TA............... TAAAAATAGACCCGATCTACAGATTTTTAGAG 727260 28 92.9 32 ...........TA............... TATTTCTGGGGCGTCATGCACGCTTTGGATGA 727320 28 92.9 32 ...........TA............... GTGATGAACAAATTAAGGGGCTTTTAAACTTG 727380 28 92.9 32 ...........TC............... TTCTTAAATCATGATAACGCAAGTCTTCAATC 727440 28 92.9 32 ...........TA............... GCTGCACGCGTTCATGTTGATAATGGCGCGAA 727500 28 92.9 32 ...........TA............... ATCACCAACTACTATGAAGCGCGCCAAATGGC 727560 28 92.9 32 ...........TA............... CAGCGCTTTACTTATGCCAGTGAATGCGCTGT 727620 28 92.9 32 ...........TA............... GCTATTACTAGATGTTCTCAAATCAAACAGCT 727680 28 92.9 32 ...........TA............... ATTCTCGAACTAACTCAATCCAACCTTCAGTA 727740 28 89.3 32 .........T.TA............... ATAATGTGACTAAGCTTGGAAAAGCTATAAAT 727800 28 92.9 32 ...........TA............... AGTTCAACCAAGAAAAAGCGCAAGCGTTCGCA 727860 28 89.3 32 ...C.......TA............... ATCATGGCCCGTGCCTATCTTCATTCTATTTT 727920 28 92.9 32 ...........TA............... TACAAAACACGGCAAAGATAATCTACTCCGAG 727980 28 92.9 32 ...........TA............... TGCATAAACGTGTCCCGTTTGTGATTGAGTTA 728040 28 92.9 32 ...........TA............... TAACAGAGCAGACGAACTTATACAGCAAATGA 728100 28 92.9 32 ...........TA............... TATGCACGTATTTGCACAACGTATGCAAAACG 728160 28 92.9 32 ...........TA............... AGTAACAAGCAAAGTATTAAGCACTTAGATGC 728220 28 92.9 32 ...........TA............... TGAATATAAATGGTCAAGAGGAATAGCAAGAG 728280 28 92.9 32 ...........TA............... TTTGGCAATTATTGCCTCAACGATATTAGCCT 728340 28 100.0 33 ............................ CGTGCAGCATTCAAAACACTGATGACATACCGA 728401 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 42 28 96.0 32 CTTTACTGCCGAGCAGGCAGCTTAGAAA # Left flank : TGAAACTGGATCCTGATATTCATCAGGATGACGAGTGTAAGATAGCGGTTTTTCCGCAACAGCTTGCTGTAACTTCACTTTTTTCATTTATTTTACTGTCAAACTGACAATTTATTGTATCCGTGCTGAATTTTTAGGCCTAACGAGTAGCTGCTTGTGCAATGCATTGAAACTGGATCTTGATATTCATCAGGATGACGGTGAATAGGGTGGTATTCAGAGGGTTATTGGCAAAAGGGAATTTGTTTAAAAACACTGAGCATTTGCAGCTGACAATAGGGCATTTATTGATTCAAATTTCATTGCAAATAAATGATCACACAGATTGATGGCGTGTTTTCCATTTATAACTTATCAAGAACGCTTTTACCCTTTATTTTTTGTTCTTTAAAAATGTTCATAAAATACAGTAGGTTGTGATTAGTTGTTTTTCATAAGGTAAAAATAGGTTTTCTGCCTTAATAGCTTGTTGCAACTTGTCTTTTTTGATTTACTCTATA # Right flank : GATGAGTGACCGAAACGAAGTTTCGCAGCTCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTTCATGGATGGATTTCAACTCTGTACTAGCTTTGTACATTCCTTCACTACCCTACAGGCAGTTTAACGTATTCGTACAGAATTGTTAGGCCTAACGAAGAGCTGCTTATGCAAAGCAGTAAAACTGGATCCTGATTTTCATCAGGATGACGGCGCGTAGAGAGGCGTTGTTAAAGCCGCTTTAGTCATGAATGTTCGATGTAACCAAGCTCCGTAGATGGATGTCAGCTCCGTGCTACCTACACTCACTTACAATGCCATATAAGCACGTACCCACAAGTCTACACTTTCTCACCCCCGTCATTCCGAGCTTGCCTCGGAAACCATTGGCTTTTTCGATGAGAGGCCATTAATAAAGCTTGTAAACATAATTTCTCTTTAAGCCGAGCATCATGGAAATCGAGATCGATTCTCACTGGTAGGTTTGTGAAAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGAGCAGGCAGCTTAGAAA # Alternate repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGAGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 739104-740778 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015416.1 Pseudoalteromonas luteoviolacea strain S4054 chromosome 2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 739104 28 100.0 32 ............................ AAAGTGTCACGCCGTTTTATCTTACATGCCAC 739164 28 100.0 32 ............................ CTAATAGCAGTGAGTTTAGAGACAGTGAAATT 739224 28 100.0 32 ............................ GCTAGATGCTGAAATATCAAGCTATACAATGG 739284 28 100.0 32 ............................ TACGCGATAAGGCGTCTCTTATGCGAACGAGC 739344 28 100.0 32 ............................ GTTTGCGCCAGCTGCCTGACGAGCAAATTTGC 739404 28 100.0 32 ............................ AATTATCTGTGGAATACCAGAAACAACACCGT 739464 28 100.0 32 ............................ ACTAGTAACCGAGTCACCTAAAACTGTACTTT 739524 28 100.0 32 ............................ TGTTAGCACTGCAAAAACGGTGTTGCATTTGA 739584 28 100.0 32 ............................ CTAACTCACTACTATCACGCCCAGCGTTCTCT 739644 28 100.0 32 ............................ GAACTGAACGAAAAGCAGTTGGCCGATCTCAT 739704 28 100.0 32 ............................ TTTAAGACTTACTTTTGCTTTCACAAAGTTAC 739764 28 100.0 32 ............................ TAAGTCCATAACTATCGTGTATGCTCGGCCTA 739824 28 100.0 32 ............................ CCACGACATTGGAGATATGCCAAGTTAAAACT 739884 28 100.0 32 ............................ TACTAAGCCCATTTTGATGAGTACAGGCACGG 739944 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 740004 28 96.4 32 ...........C................ TCTAGACCTAGTGGATTGAAATATGCAATACC 740064 28 100.0 32 ............................ CTAAAGATAAAGTACTCAAAAGTGTTAGCTAC 740124 28 100.0 32 ............................ TAACATTTTTGTGGGTGAACTGATCAGTCACC 740184 28 100.0 32 ............................ CCACATGCCTTGCATCTGTTGAAACGTATCTT 740244 28 96.4 32 ..................A......... GTTTACTGAATATACTTACGACACGTTTAGTA 740304 28 89.3 32 ...........CG.....A......... GTGGGGCGTAACTGGGACTGGAGCTATCAACA 740364 28 89.3 32 ...........CG.....A......... TATCAGCAAACAGCTAAACGACGAGCATAGAT 740424 28 89.3 32 ...........CG.....A......... AAAACATCAATTTCTTTTGCAGTGAGGTTCAT 740484 28 89.3 32 ...........CG.....A......... TGCCAGTGGACGATTTAAAAAGCATCTTTTAT 740544 28 89.3 32 ...........CG.....A......... CAACTCCCAAGCCAGAGTGCCGCATTGCAATA 740604 28 75.0 119 ..........GA.T....A......GTG ATGAGTGACCGAAACGAAGTTTCGCAGCGTAAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCTCCGTGTTGGAAATATTCCG 740751 28 71.4 0 G....T....CC......A.T...TT.. | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 27 28 95.6 35 CTTCACTGCCATACAGGCTGCTTAGAAA # Left flank : TACCAGATGATGTCAGCTATGTGAGTTTCACACGAAAAAACGTTAAAAGCCCTACTAGGATTGAGAAAGATATGGAAGAGCGTGCTAAGCGGCGAGCACAAAAAAGTGGCAAAACGTTTGATGAATGCATGACAGAGCTCGCTGAGACTAAACCTGGTCCATCCGATTTGCCTTTTATCTTTTTGCATAGTCAACAGACTAAGACTCGAACACCAGACACAAATAGTAAATACCCACTCTTTATCACCATGGAAGGACGCGAGGGTAATTCACATGGCACATTTGACTGTTACGGGTTGAACGCGAAGGCAAATGATGAAAATGTATTTGGGTGCGTACCTCAGTTCTAATAAATAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATCTGCATAAAATACAACGAGTTGCGATAGGCTGTTTTTAATAAGGTAAAGCTAGGCTTTTTTACCTTAATAGTCTGTTGCATCTAGTCTTTTTTCATTTATTCTATA # Right flank : ATGTATTCGTGATGAGTTGTTAGGTCTAACGTGGAGTTGCTTGTACACGCAGTGAAACTGGATCCTGATATTCATCAGGATGACGGGTTTAAGATAGGTGTATGATTTTATCTAAGTAGTGCATTTTGTTATGCCTACTGAAAGCTACTGCCCCATAGGAAGTGTATTATTGTTAGCCGTGATGAGTCGTTAGGTCTAACGTGGAGCTGCTTGTGCACGCAGTGAAGCTGGATCCTGATATTCATCAGGATAACGGGTTTAAGATAGGAGTTTTGATTTTGCCTAAGTGGCGTAATTTACTATGTCTACTGTAAACTACTGCCATACAGGCAGCTTACAAATGCCGGAGTTGTTTCTACACACACTAAAACCTTTACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCACTATCTCATTATCTCACTGTCTCACTGTCTCACTATCTCACTATCTCACTATCTCACTATCTCACTGTCTCACTGTCTCACTGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCATACAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //