Array 1 2602728-2602308 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP078554.1 Enterococcus hirae strain Colony616 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                                                                    	Insertion/Deletion
==========	======	======	======	====================================	===================================================================================	==================
   2602727	    36	 100.0	    31	....................................	TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN                                                    	
   2602660	    36	 100.0	    30	....................................	TNNNNNNNNNNNNNNNNNNNNNNNNNNTAA                                                     	
   2602594	    36	  77.8	    30	............................NNNNNNNN	NNNNNNNNNNNNNNNNNNNNNNNNNNGCGG                                                     	
   2602528	    36	 100.0	    30	....................................	NNNNNNNNNNNNNNNNNNNNNNNNNNNNTA                                                     	
   2602462	    36	  94.4	    83	..........................T........T	GTAGAAGCGTTGTGCTTTACTCGATCGCTGTTTTAGTTTTGTGTTATTTTGAGTGCTGACCTTATCAACTATGATAAGAGGTA	
   2602343	    36	  75.0	     0	.C.......T................AA.GA.G.TG	|                                                                                  	
==========	======	======	======	====================================	===================================================================================	==================
         6	    36	  91.2	    41	GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC	                                                                                   	       

# Left flank :   CTAAAATCAAGGATTGATCAATTAACCACCAAGGTTCAGGAATGGATTAGTGAGGAACTCTTAGAACATGAATTAGATTTAGTCTGTGAAGAAATGAGTATGGTTGAGCTATTCAAAGCATTAAAAATAAGAATTACGACGCAACCAGAATTAATCTTTCAAAAAATAATGGAGATTTTACAGATTTATAAGTATCTAGTGAAAAAGAAATGCTTGGTTTTTATCAATGTTGGAGCGTACTTAACAACCACAGAAATGGCTGAACTACAGGAATATATTTCTTTGTGTCATATGCCTGTCCTTTTTATCGAACCACGAAAAATAAAAGGATTGAAGCAAACTGTTTTAGATCAAGACTATTTTTTGTGTGAAGAAATGTGGTAAAATAAGAACAATCAAAATAACAAAAAAACAGCATGAATGAAGCATTCAAGACGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGAGATTTCGTGAGAAAAAATTTTTCTGCGAG
# Right flank :  CCTACTTTATCATGAAAAGTAGGCTCTTTTTTTACTTATATATAGGAAAGTGTCTTCAGTTGTTGAATCTGCTAAGTTTTGATCATTGAAAGGGGGAATCGTGCCTTTTAAAAATGAATGGGTATGTTTACGGAACAGGACACAATTGTTCAGTCTTATCAACATTGAAACGAATTCATTTTCTCAAAGAAAAGATGAGTTGCTAATTTCGTGCTTTTTCTCTATCATCAAACAGTAGGCATTTGTTCGTGAACTAAAATGAATGTGAGAGGGGACAGTGAGATGTTTGATACAAATTTGATAACTTATTTGGACTGGTTGATCGCAATTTTGAATATTGCTTCAATCATTATTTTGCTGGTAGGGATTTTTTTAGTCTTAAAAAATCTTTTTGACTGGCACCCACTGAAAAAAGACTACGAACAGCGTAATTTCCGAAATGCGGAAGTACGCAAATTATTGGCTAGTTATATTTTGCTGAGTCTAGAGGTGCTAGTGGT

# Questionable array : NO	 Score: 4.94
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.87, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.57%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.30,-2.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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