Array 1 11001-10733 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPJ01000074.1 Vibrio paracholerae strain SIO NODE_28_length_11210_cov_147.785_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11000 28 100.0 32 ............................ GTTGAAGTGGAACTATAAAGCAAGTGAGCCTC 10940 28 100.0 32 ............................ AGCTTGAAAAGTACATGGCTCGCGGTGAACTT 10880 28 100.0 32 ............................ TTGTCGCCAACGTTTGTATCACCGATGTATAC 10820 28 100.0 32 ............................ AGTTTGCATTGTGACTTTGGCTTGCACGTACC 10760 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTGTTCTGCCGAATAGGCAGCCAAGAAA # Left flank : CGCTATGCGACTAGGCCTTCTAGAAAGCGTAACTCAGCTTAACTCACATGCATTACGACGGTACCTGACTTACGTTTTAACTCTTTTGACGAAGACTCTTTTTTAGTTCATTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAAGGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTAT # Right flank : AGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTTATCTTGGTGGTTTTTTGTTTAAAAGGCTCCCCATGTATTTAAAAAGACTTGAAGCTATTGATGTTAATTTCAATCACTATGAGGTAGGACTTGAACGATATGTTAGGTGTACTTGGGCCCTGAACATGTATCGGCATCATGTGTTTCGTGCAAACCTGCCAGACACATTTGTGTTGGAGATCAACCGAATCAATGAATCTTTGGGTATTGCGGTAGAAACCATTGATTTGAAAGAGTATAGAGACAATTTTAGGTCGTCAGAAAAGATTAACAAGTCTATTAAAGAAAATGAATATCCTCGTTGGATCTGGTTTTACGGTGTTGAAGTGTTAAGGGATACGAATTATGCAGGTTGGTTACGTAGTCGACTAACAGTCCGATCAATAGAGAACTTAAGAGTTATCTTTGTTGTTGAGTCTAGTGACGATTATCGAGAT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 111506-114053 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPJ01000029.1 Vibrio paracholerae strain SIO NODE_13_length_121262_cov_164.261_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111506 28 100.0 32 ............................ TCCAGTTGGGATAGTAGTTGTTTGGCTTCATG 111566 28 100.0 32 ............................ TAACGAAAGAGCAGTGGGACATTCTTGAGCCA 111626 28 100.0 32 ............................ GCAACGCTGCATTGCATGAATTGGGATATTGA 111686 28 100.0 32 ............................ GCCGCAATCGCTAATGGTGCAGAGTTGCAAAT 111746 28 100.0 32 ............................ TTAGAGAATCTGTTACAGACATTGATGGGAAC 111806 28 96.4 32 A........................... TGTCTGACCGTTTCTTCGTTGATTTCCTTCCC 111866 28 100.0 32 ............................ ACCCAGCTTAATAAAAAATATCTCTTTAAATA 111926 28 100.0 32 ............................ TTGCCAAAAAAGTCGCTCATTTTCATTTCATT 111986 28 100.0 32 ............................ AGCAGCATTCATCGACAGGGCTAACCGTAAAA 112046 28 100.0 32 ............................ CTGCATTGACGCAAGATACTCATTGCGGAACT 112106 28 100.0 32 ............................ AGACGCTGGTTAGGCGCAAAGAAAACCCGTTC 112166 28 100.0 32 ............................ TTCAATGTAAATGGAACAATCATTATTCATCC 112226 28 100.0 32 ............................ GATAAAATCCAGACCTTGCTATTCATTCTAAA 112286 28 100.0 32 ............................ ATATCTAAGCCGCGCTTACTAAACTTCTTGTG 112346 28 100.0 32 ............................ GCAATAAAAAGATAGTTAAAATCACCCATCAC 112406 28 100.0 32 ............................ AATCACCGCCATGCAATACGCGTCTGTCGCTA 112466 28 100.0 32 ............................ GTTCCAAGTGGTGAGTTAGATGTCACCATACC 112526 28 100.0 32 ............................ AGCAGAGAAGTTTTTCTTGAACAAGCATGAAT 112586 28 100.0 32 ............................ AATCGTGCAAAGGTTGGTCGCGCCAGCAACCC 112646 28 100.0 32 ............................ ATAAGTCCTCCTGTTGTGCAGCTAAATATAAC 112706 28 100.0 32 ............................ TCAGCATCTGCTTGAGATCCCCGGTGCTATCC 112766 28 100.0 32 ............................ ACTAAAAGAAACCACAGATACCAAAACCAAGC 112826 28 100.0 32 ............................ TAGCGTGAAAAAACTGTTAGGGCTGCCTGAGT 112886 28 100.0 32 ............................ CGACGCAACTTGTCCAGCACCACCCACAACCC 112946 28 100.0 32 ............................ AGCAACCATTGCTTTCTGGGTCTTCTCGATCT 113006 28 100.0 32 ............................ GTTTTATTTTTGCGATGAACCCGAACTTTGAT 113066 28 100.0 32 ............................ ATAGAGAGGAAGCTGAGCAAAATCAACACCGG 113126 28 100.0 32 ............................ TAGCAAGCCAGCACAACCCCGCTCTCAGGCTC 113186 28 100.0 32 ............................ ACTTAGACTCTAATCGGACACCTTTACTGGTA 113246 28 100.0 32 ............................ AAGCCAGAGCAGAATCACGCCTAACCCCATGC 113306 28 100.0 32 ............................ TACATGGCCTGATTGCCTTGATAAGCCGCATC 113366 28 100.0 32 ............................ AACGGTAAACCGCGGCGGCAAAATCAAGCTGT 113426 28 100.0 32 ............................ ATTTAAAGCCGATTGCAAAGCCCATGATTAAT 113486 28 100.0 32 ............................ AAACTTCGCAGCACTGGAAAAGCAAGTTATCG 113546 28 100.0 32 ............................ ATTCCATCTGGAGCTTGCGAAGACCATTGATC 113606 28 100.0 32 ............................ TGTTTTCTTACTTCCCATAATTACGGGTATTT 113666 28 100.0 32 ............................ GGAATAACACCCGAAAACGGCGTTTTATACGC 113726 28 100.0 32 ............................ AATTGACGTTCTCGATCGCTGCACGTCAGTTC 113786 28 96.4 32 ...........C................ CGAAGAGATCAGCGCGACGAGAGCGATCTGGC 113846 28 96.4 32 ...........C................ TTTAGGCTCAGGGGCTTTAGGGGGAGTAGAGC 113906 28 96.4 32 ...........C................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 113966 28 96.4 32 ...........C................ ACTGGATAACATCACCAAAGCTAAGATCATTG 114026 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGTCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGGTCTCCTTATTTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGGGCAAAGCGCACCACTTGATGGGTTTCCCCTAGGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTACAGAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGTAGATCAACTCCCGCATCCTTCAAGCGATTAAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 730-1899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPJ01000081.1 Vibrio paracholerae strain SIO NODE_34_length_4488_cov_133.101_ID_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 730 28 100.0 32 ............................ CTCACCTTATGCCCGGTGACAAGCTGTCTATC 790 28 100.0 32 ............................ TGCTTAAAGTTGCTCATCTACATTGGCCGATT 850 28 100.0 33 ............................ CGATGAATAACTTGCCTGACTCTGCGCTTACTA 911 28 100.0 32 ............................ TATCTTGTGCTACTGCATATCCTAATCACTTC 971 28 100.0 32 ............................ ATCCATTTCTGCGATATCTCGCTTAGTGAAAT 1031 28 100.0 32 ............................ CCTTGGGAATAACCAAAGTAGCCACGTTTTTC 1091 28 100.0 33 ............................ AGTCAGGGAACCAAGTCAGCGACACCCCTTTAT 1152 28 100.0 32 ............................ CACTCCCCGCCGCCTACTGGCTCAAACACGCC 1212 28 100.0 32 ............................ AGTAGCTGGATTCATCAAGTATTTGGTTTTCA 1272 28 100.0 32 ............................ CAGCTCATCAGGTAGAGGCATGAGCACAAGGC 1332 28 100.0 32 ............................ CTTAACAAAATCGTAAGCGACTAAAGCAGCAA 1392 28 100.0 32 ............................ TGATGGCTCTACAGTGGGTATAAATCGTGCAG 1452 28 100.0 32 ............................ CCAAAAGTAAGGATGAAGCATGAAAGTCGTTC 1512 28 100.0 32 ............................ TTTAATGTTTTAAAATCCTCATTCGTGAAAGA 1572 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 1632 28 100.0 32 ............................ AGTATCGATTATTCGATTATGGCGGCCTTAGA 1692 28 100.0 32 ............................ TGTGGGGGCTGTGTCAGTTATGCTGAGAATTC 1752 28 100.0 32 ............................ TTTTGTAATTTGAAATCAACAACCCAATTTTT 1812 28 100.0 32 ............................ TTAAATCAGTTGGAGATAATCCTATGAAATTT 1872 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACCGGTTTCTTGGTCTAAAACGAGAGTGCATTCGGTAACAGAGCCGTGTTCAGAAAACAGTTTACGAATGTCGTGCTCAGTTGTGGTGCGAGCAAGGTTGCGAACTAAGAGTTTCATAGTTGTCCGTTGATGTAGAAATAACGGTGAGGATTGTCTCAATAAAGACAGTGGCTACCAAGCGATAGTTTGGTTTTACCGTAAAATAACAGCATTCATAGCAACCAACTGCATAACAAGCGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTGGTGGTAATGCGTTGGCAGCCCCTTAGGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTAAGTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCATTGATTTTATTGGTTTTTAGTGCAATGCGGTAAGTTGGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGCCCTTAATAGGAATATCATGTGAAATATTTTCAAAAAGGTAGTGGTGAATATTTAGTCTTGGTTCATGGAGCATTAACAGATGGTTCTATGTGGCTCCCTCATACAGATTCGTTGTCTCAATATTTTGATGTGGTTTCAGTGACTTTAAGTCATTTTGACAATGATGATAACTTAATTTTTGGTCTGAACTCACACGCTCAAGAACTATGTGAGCTTGTGAAAAAGTTAGTTTCAGATAAGCCCGTGAATGTTGTTGGCTGGTCTTATGGTGCAGATGTTGTATTGAACATGATAGCATCGTCTCAATTGCCATTGTCTAAGGTATTTTTGTATGAGCTGGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270818-268447 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPJ01000076.1 Vibrio paracholerae strain SIO NODE_2_length_296977_cov_154.707_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 270817 28 100.0 32 ............................ TGACGACGAGATGATGCTGCCTTGACCAGCTC 270757 28 100.0 32 ............................ CCGTTCTCACTCAGTACAGATAGAAAGCCGGA 270697 28 100.0 32 ............................ TTTGCGGCACATCAATAGCCGATAACAACACA 270637 28 100.0 32 ............................ GTTCAAGGTTACCGCGTTTAACTCGGTTCAGG 270577 28 100.0 32 ............................ GTTGGAATATCGAGTAGATAACTGGAATTAAT 270517 28 100.0 32 ............................ ATTGAACCGAACCCCCTGTGGTTTAGGTGTGA 270457 28 100.0 32 ............................ CAAAGCGCCGTGACGTAATCATTGCAACGCTT 270397 28 100.0 33 ............................ CCTCAAATTATCATTGATGCGCTGAAATCAATG 270336 28 100.0 32 ............................ TGTCTAATGCACCGAGCCCAGTATACCCAAGA 270276 28 100.0 32 ............................ GAAATACGCCAACGCCCAATCTTGCTCGGTCA 270216 28 100.0 32 ............................ AGTAAGATAAATTGGTGCTACTGCGTCTGCGC 270156 28 100.0 32 ............................ TTTTAGGCATTTCTTTATGTCAGCGCCAACGC 270096 28 100.0 32 ............................ TAATCGCAAAAACTCGGTAATCTGCTGCGGCA 270036 28 100.0 32 ............................ ACTTTGATGGAGTCTGCAATCGCGTCCATCGC 269976 28 100.0 32 ............................ ACAAAATCAGCCGTGATGTGGTTCGCACCCAT 269916 28 100.0 32 ............................ TTTAACTGGCACTCTTGGCAGATCATTCTTGG 269856 28 100.0 32 ............................ TTATCGATTCTGAATACTGCATCACCGACCGA 269796 28 100.0 32 ............................ AAATAGCCCTAGTGCATTGATGAACACGCCAT 269736 28 100.0 32 ............................ ACTGTAAGTTCGGGTTTCTGGGTTATACGTAT 269676 28 100.0 32 ............................ ATTTTGAAGCCGTCAACCCACTCCCAAACATT 269616 28 100.0 32 ............................ TTCACGTTCGCTGACTGACACACCGATACCGT 269556 28 100.0 32 ............................ ATCATCAAGCTCGATTTCCATGTCGGCGTACT 269496 28 100.0 32 ............................ TTAACGGTGACTTTTTGCATGTTGAGTCCTCA 269436 28 100.0 32 ............................ ATTCGTCGGTTGCTTTGTAGGGATAGTGGAAA 269376 28 100.0 32 ............................ GCATTGATACAGTATATTGTGATGCGGTTGGT 269316 28 100.0 32 ............................ TGTGTCGTAGGGTACTAGTGTTAAGTTTGTCG 269256 28 100.0 32 ............................ CATAATGTCAACTGCGTTTAACTGGTCTGACT 269196 28 100.0 32 ............................ ATCAAAAGCGGGTGTTTTTACACAGCGCTCAT 269136 28 100.0 32 ............................ GTGGTGCGGAATTGATTTTGAATTGCTGCCGC 269076 28 96.4 32 ..............T............. TAGTGCAGCCAGTCCGATTTTTTGGGGCTGGC 269016 28 100.0 32 ............................ TTTGTAAGAGTATGCTTCGTGCTTGGTCGATA 268956 28 100.0 32 ............................ TGCTGTCTGGGATCCGGTCTCTAACCAATGCA 268896 28 96.4 32 ...........C................ GACAGGCAACACCGAAGGATTAGGATAGATAT 268836 28 96.4 32 ...........C................ GTTGTTGGGTTTGTTAACGTAAAAATCACCAT 268776 28 96.4 33 ...........C................ ACCATGCCGCAGGAGTTTGGCACGTTTTTATCA 268715 28 96.4 32 ...........C................ GGATTTTTCCATAGAGCGGATCCGCGCCTTCC 268655 28 96.4 32 ...........C................ ATTGTCCCAAGCGGTTTCATCTTCGCTTAGTT 268595 28 96.4 32 ...........C................ AAAAACCGGATTGACGAACCACGAGATGCTTA 268535 28 96.4 32 ...........C................ TGTTGTGTATCGGTCCTGACCGTTCTGATCTT 268475 28 89.3 0 ...........C..........G.A... | T [268455] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.0 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGATTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATACCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCCTATAGTTGGGGTTATATAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCACCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTCGGTGAGGACTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCTCGTATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //