Array 1 36125-36397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000031.1 Nocardiopsis coralli strain HNM0947 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36125 29 100.0 32 ............................. TACCTGAATCAACCGACAGCGGCCGACGACGC 36186 29 100.0 32 ............................. ATGTCGGAGGCGGTCGCGATCACGGAGAGCTC 36247 29 100.0 32 ............................. CAGGATCCGGGATCTCCGGACTCGGGGACGCC 36308 29 100.0 32 ............................. CGGCGGCGAGTATTGAGTTGTACGGCGTTGCC 36369 29 93.1 0 .........................AG.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCACGCACGTGGGGATGGCCCG # Left flank : GCTCGTGCGGCGCGACGGGGACGCGGACGAGGCGTTGGAGCTGCTCGACCGGGTGCTGTCGGAGCCTCCGGTGCCCGCGCGCGTGAGCGAGTGCGGGCTGATCGACCCGGGGCCGGGTTCGCGGTCGAGCCTCAGCTCGAGTCCGGACCCGAGCCCGGGTGCGCATGCGCACCCGCATCCGGGGGCGGAGGCACAGGCTGATCAGGGGTTCCTTCCCCGACCGCGTCCGTGGCCTGGGCTGTGACCCTGTTGCCCGCTGCCGCGTGGGTGCGTGGGCGGCCCGGCGGATCGTGATCCCGGATGCCTGATGAGTCGGGGCCTGTTCTGTTCGAGCAGGCCCCGTCATAATGGCCGCGTGGTCGCAGGGCAGGGAGTTCATGCGCGCAATTTCCGGTGGACTAGGATCACGCAGAGAATTCGAGTGGCCACAGTAGTGCGGGCGGCAGCTCCGAATGTGGTTGCAGAACCATAACGCGCTACATCGCACCAGGTCACTAAGT # Right flank : GGCTGCCGAATACCCTGCGGGCCGAGAACAGGACCTCTGAGGAGATGGCATGACGCGGATCGGAATCACCGGCCACTCGAACCTCTCGGCTGACAGCGTTCCTCTCGTGCGCGAGGCCCTGGCCGGGGTGCTCGCGCCGTACAACGATGGGGAGCTGGTCGGCCTGTCGTGTCTCGCCCGAGGGGCTGATCAAGTCTTCGCCGAGGTCGTGCTGGAGGTCGGCGGTCACCTCGAAGTCGTGCTTCCTTCGGTCGACTACCGCGAGGCGAAGGTCAAGCCGTGCAACCTCGACCAGTTCGACGACCTTTTGATGCGCTCGACGCTGGTCCGCTACATGCCGCACAAGAGCGCCGGGCGGGAAGCCTACGAGGACGCGAACGAGACGATCCTGGATGGCATCGACCGGCTCGTGGCCGTGTGGGACGGGAAACCGTCGGACGGCAAGGGCGGCACCGGGGACGCCGTCGAGGCAGCACAGGACCGAGGCGTCCCCGTGGACG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38781-39297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000031.1 Nocardiopsis coralli strain HNM0947 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38781 29 100.0 32 ............................. GTTCCGTGCTCCTGGTCCCAGAGGATTGTCTG 38842 29 100.0 32 ............................. CGGCGGTCTTCTGGTAGGCCAACTTGCGGACA 38903 29 100.0 32 ............................. GGCACGGCAGGTGCTTCCGGTCTGGGGGTCGT 38964 29 100.0 32 ............................. TCCAACAAGATCGACGCACTCCTTGAGATCCT 39025 29 100.0 32 ............................. AGAGCGCCGAGGGGCAGCACAACGGCCAGTTG 39086 29 100.0 32 ............................. AGTCTGGGGGTCGTAGACCGCGTTGCGGACCG 39147 29 100.0 32 ............................. GTCCAGTACATCGCGCTATGTGGGAGTGAGCT 39208 29 96.6 32 .........................T... TCCGAGTACACCTGGGCCACGAACCCCTCCAC 39269 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGCTCCCCACGCACGTGGGGATGGCCCG # Left flank : TCGGCGCCGGTGCGCGGCCACGGCCCGCCCTCGCGGATCCGTCATGGCTTGCGTTGAGGCTGTTGAGGCTCTCGCACATGCCTGCTTCCTCCTGTCCCTCCTGCGCGGTCCGGGTGGCCGCGCGTTCCGGCGCTGCTCCGGTGCGTTCCCGTGTGTGTTCCGTGCGGCCTTGGGCCCTTGGAGTCCTGTGGGTCCCTGTCGGCCCGGTGCCGTGATGCGTGGTCGCGGCTGCTTGCTGACACACTCCAAGTTAGAGATCAGGGCAGCCGTGAACATCGGTCGCAAGGACGAACCGGGGGTCCAACGAACGTTGGGTATCCGGGGCACCGGAGGGCGACGAATGGCTGAGGAAAGCCGCCGGTCGTTGGTCACCGGCCGCCCGCGTAATTGCCTGTGGACCGAGCTTACGTAGAGGGTTCGAGTAGCTACAGTGGTGCGGGCGACAGTTCCGAATTTGGTTGCAGAACAATAACGCGCTGCATCGCCCCAGGTCATGAAGT # Right flank : GATCTCACCGGGGCGGTCGAATGGCCGCATACGCTGGTCCGATGCCCGGCGGCGCACGCCGCCGCCCGCGCCCGGACGAGGAGACCCCATGGCAGAACCGGCAGAACCACTCTCCGAGATCCTTGCGGACGCCCCGGTCGTCGCCAGCGTCAAGAACCCCGAGGATCTCTCCGCCGTACTGCGCTCCGACTGCCAGGTGGTGTTCCTGCTCTACGGCACCCTCCTGGACCTGCCCGAACTGGTGCAAACTCTGAAGGACGCCGACCGCACCGTTCTGGTCAACGTCGACCTCCTCGACGGCTTCGCAACCAAGGACGTCACAGTCCGCTTCATCGCCGAACGCACGTCGGCGGACGGCATCCTCAGCTCGAAGGCCTCCCTGGTCCGCACCGCCCGCGAGTGCGGCCTCTTCTCGGTGCACCGCTTCTTCCTGATCGACTCCATCTCCTACCGCAACCTCGTCCCGCAACTCCGCTCCTCCCGCGCCGAGTGCGTGGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 58411-58818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000031.1 Nocardiopsis coralli strain HNM0947 Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 58411 30 100.0 31 .............................. CAAGGGCACCGCCGCCGACCAGGACGAGGCC 58472 30 90.0 31 .........A...............T...C GACAGCTTGAGCCAGGCCTTGGGTGATGGAA 58533 30 93.3 31 .........A...................T TCACGATCGTGAAGCCGCGCGCCGCGAACTC 58594 30 93.3 31 ................C............T CGACCAGGTTCGGCCACCCGATCGCGATCGA 58655 30 80.0 43 ...........A....C....G...C..CC GCATCACGTCTCACATGGTCGCGCGGGAGCGTTCAGCGACGGC 58728 30 93.3 31 ..............T.C............. TGAGGGGGTCGGTATCGGAGTCGATGCGGGC 58789 30 86.7 0 ..............T.C........G..T. | ========== ====== ====== ====== ============================== =========================================== ================== 7 30 90.9 33 GTGCTCCCCGCGCACGTGGGGATGGACCGG # Left flank : AGGCCCCGCCGGTGATCCGGGAAGGTGCGGTCGCGGTGCCGGACGCGCCCGGGTTGGGCGTGACGCTGGACCGGGAGCGGTTGGCGGAGGCGCACGAGTTGTATGTGCGGGAGGGGCTCGGCGCTAGGGATGATGCGGCGGCGATGCAGTTCCTGATCCCCGGTTGGGAGTTCGACCCGAAGAAGCCGTGCATGGTGCGGTGACTGTGCGACGTCGGGGTGCCGGCGGGAAGGCGCCCGTCGCGGGGGGGCTCCACCGGGGAGGGCCGAGGGCCACGGGTCATGGGGCTTGTGGCCGAGCTCGGTGAGGCTCCGGCGGGCGTCGGGTCTCGGGGCTTCGGGCCTCGGGGCCTGTACTGCCCGGGGGCGCCACGCGCCTTGTGCGCGACTGCCTGTGGGCTAGGCTCACTCGGAGGATTCGAGTGCCTACGGGATTGCCGAGGGCGGGCCCGACCTTGGTTGCAGAACCATAACGCGCTGCGTTGCCGCAGGTCGTTAAGG # Right flank : GACCGGGCCTCCGTCCCGAACGGCCTCGACAGCGCGATCCGCTGGCTCGGCCGTGACAGAGTCGGAATGGCCGTGACCAGCCGATCGAGTTCAGGTGCCGGATGAGCGAGAAGAACCCCAGGGGCGTGGCGGCCGACAAGGTCGACTTCAAGAAGACGCTCGACGCCTACCGGGCCGAGCGCGACACGTTCCGGATCCTCGACGTTCCCGCGACCCGATACCTCATGATCGACGGCCACGGCGACCCCAACACCTCACCCGCCTACGCCGAAGCGCTCCAGGCGCTCTACCCCGTCGCCTACAAGCTCAAGTTCGCCAGCAAACGCGAGCTCGGCCGCGACTACGTCGTCCCGCCCCTCGAAGGCCTCTGGTGGGCCGAGGACATGGACTCCTTCACCACCGCGCGCGACAAGTCCCGCTGGTCCTGGACGATGATGATCATGGTCCCCGACTGGATCGAACCCCCGATGGTCGACGCCGCCATCGAGCAGGCCGGCGCC # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19058-19268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000017.1 Nocardiopsis coralli strain HNM0947 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19058 29 100.0 32 ............................. GGCGCGTTCGGAAAACGGTCGGATACCGAACG 19119 29 100.0 32 ............................. GTCCCAGCTCCAGGACCCTGAGCTCGACGAGG 19180 29 100.0 32 ............................. ATCGATACTGCTGCCGGCGCGCTTCCCGGTAA 19241 28 75.9 0 .....T.....G.A...-...T.....TT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : GCTGGTCGCCGGTCACCAACGATCGCCGCGCTGGTCGGGCGCCGTGGTCGGGCGCGCTGTTCGGACTCCGGTCACCACGCGGTTCCCACAGTGCCCACGCTGTCGCCGCAAGGACGCTGTTCGCTGCTCACTGCTCGTCGCTGCCCGCTGCTCGTTCCGCGCAGCTCGTACGGCAGACCAGCCCAGCTCTCGTTGCCACTCCCCTGCCCGCTCGCGCACGCGCTCGAACGGGCGAACGAGCGGAACGAGCGCGCGCGGGCAGGCGGACAGAGCGCACGAGCGCCAAGCGCTGCTCGTATGCAGGCAACCCGGGAGGGCCTGCATACTGGTGCCACGCTCTGCATCACTTGGGCACTGCATTACTGCATTACTGCACGCCTGGCACAGGAGCTGACGCTGGACGCGGCACTGGGACTGGGGCTGGGAACCATTTGTGACCTGCACAGCCACAACTTGCAGATTTCCCGGTTACCCACCGGTAGACATGCAGGTCAGGAAGA # Right flank : TACACGGCAGCGGTGGCTGGTGGCCAGTGCGCCTTTCAGGTGGCGGACGAGTCTTGGGTGGACAGCTCCATGGCCAGTTCGACACAGCGCCGTCGGGCTGGGGAGGCGTCGTAAGGCACCATGCCGATGACTTCGAGCGCGCTCATGGAGCCGACCTTCCGCCTGCCAGAGCTGGGGCCGGCCTCGTCCTGGCCGTCATCGGCGGGAGCGCCGTCATCCTCAGCAGCAGGGTGCAAAGCGTCCCAGGCGTCGAACAGGGCATCGTCCTCCTCATCCAGGCCGGATTCCTCGATGACGGCCTGCAGGGCGCTTTCGAAGGCGTGCCGCTCGGCGGCCACTTGAGTCACCCGTGGATCATCGACGGCGACACCGTCATCGAGCGCCTCCTCGGCTTCATCGATGCGGTCGGAGTCCTCCCGCAGAGAAGGATGCGTGGCCAAGGCGATGAAGCGGGAGGCCTGGACGGCCGCGCCGAGCGGGCCAAAGATCCGCTCGGTGAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20667-20818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000017.1 Nocardiopsis coralli strain HNM0947 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20667 29 100.0 33 ............................. GAGACCGGGTCGTGGTCGGATGGTCCCGGACCG 20729 29 89.7 32 TG..........................G CACCTCGGCGTGCCGCTGGAAGAGTTCATGCC 20790 29 93.1 0 .....................A...T... | ========== ====== ====== ====== ============================= ================================= ================== 3 29 94.3 33 GTGCTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : GATCGCCCGTGGCGTGGTGTCGGCGAAGACCGCCGCGTCCCCGATCTTGATCTGGCGGGATGGCACGAAAGACGAATGCATGAGCAGGGACCTTTCCTCAAGCGCTCAAGGGATCGGGACGTGAGTCCACCGGACCACATGCCGCTACGGAAGGTGCAACCCCAGGCACTCCGGCCCGCTCTGCACCACGCGCAATGCGCTCGCCACCCGTGCGCTGCCTGCGCGCGGCACGCACAAAGCACCGCACGCCGAGGCCCGGGGAACGGGAACCGGATCGGGGGTGCGCCCGCGTGCCTCGAACAGCGTGCATCGCGTTCCCTGTGCGATGGGCGATGCGCTTGAGGCGGGCGCTCCACGTAGGCGAGTGGGTCGGCAGCCGACACGGCCTGCATACTGATTCCACAATCAACCTGAACGGCACTCAGAACCACTTGTGACCTACACATCCACTTCTTGCAGATTTCCCGGGCGCTCACCGGCAGACATGCAGGCCAGGAAGA # Right flank : CTCGTCGTCCAAAGCCTGGGCTTGCTCCAGCTCGGGCACGTCCCGCATGCATGTGAAGGAAGCAGGGCGCATTCACGGGTGGCGGGTAAAAGATTGCGCCAACCACGCCAGATTGGTGCTCGGCGCGGCATCGTGGCGGTATGGGCATCGAACGGAACGAACCCCATGAGTGGAGCGAGCTCTCGGTCACCGAGGCCCGCGACCACTTCTCCGAACGCGTCAATCGCGCCCACTACGGCGGCGAGATCACGTACATCACCCGTGGCCGCCGCCACCAGCGGGCCGCGGCGATCGTTCCGGCTGACTTGGTCGAGCACTACGAGCAGCTGCTGGACGAGCGCGACGCCCGCGTCGCTGCCGAGCGCTTGGCCGACAACGAGGCCGGCCGCTCGAGCACCGTGCCTTTCGATAAGGCAATGGAGGAGCTCGACTTGGCCGAAGAGCTGGGCCGGTGACGGACCAGCCCTACGAGGTCTCCTTCGATGAGCCGGTCCTCAAGC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24280-24856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000017.1 Nocardiopsis coralli strain HNM0947 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24280 30 96.7 31 .............................G GCGCCGAGTGCGCGCTGTGCGGGGTCACCGT 24341 30 93.3 31 .....................A.......A GGGCGACGTGGCCCCGGCGTTCGCGGTGGCG 24402 30 93.3 30 .....................A...G.... CGGCATCTCCAGCTCGTGGGACTTCCAGTC 24462 30 100.0 31 .............................. GGCATGGGGTGGGCAGCGGCACCCACCGGTG 24523 30 100.0 31 .............................. CCGGCGTCCCGATCCCCGACGGCGCGGCCGA 24584 30 96.7 31 .............................G GTGACCGACCCCGGGTCGGTGAAGGCGGCAA 24645 30 90.0 31 ....G.......................TT CGGACAGGTAGTGGTAGGCGAACCAGGTCAT 24706 30 90.0 30 ....G.......................GG AACAGGGAACAGGGAAAGGAAAGGAAACTA 24766 30 93.3 31 .....................A......T. GGGACCACCAGTCCTTGGCGCCACGGCCCCA 24827 30 80.0 0 .....................A.TCC..TA | ========== ====== ====== ====== ============================== =============================== ================== 10 30 93.3 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GGCGGGATCGTCGTAGAGCAGGTACGGAATGACGTTGGGCGTGTGGATATCGACGGCCATGCTGCACCCCTCGGATACGGAGAGTGACTACTGACGCGGCCACCGTACAAGCGCGCGACCTGCCCGTATCGGATACTCGTCCGTTCCGGGGCCGTCCCGTTCAGGGGTGTGGCTGTCCTGCCGTCGGAGGAGGCCGCGCGGTCCGGTCTAGAGCTTCCGGACGGGCCCCTCGAACGATCGAACGGAGACGGCGCGCTCCCCGTACGTACTGGGATGGACCCCGGCACCTCAGCTCAGCGGACACCAAGCCGGTCGTAACTATCCAGGCGCATGCCCGTCAACCCTGGGCACCCGGAGCCCCGTGTGAAGTGACCCGGTCGCACGACCTGCATACTGGCTACAGGACTCGGATTCATGGAACTCAGAACCACTTGTGACCTGCATGCCCACAAGTTGCAGATTTCCCGGTTACCCGCCGGTAGACATGCAGGTCAGGAAGA # Right flank : ACTCCCCAGACATGCGGCCTTACGCAAATGCGGCAGGAGACAACACCATGAGCAGCCCCAATGCCCGCCCCGCCGTCCTGCTCATCCTGGCGACGGCAGTGCTCGGCAGCGCGGCCGTCATCCTGACACCGGCACTGTTCGACGAGTTCCACGCCGGCCGGCTCATCGCCATCATCGCCCTGGTGGGCGCTGCCATCGCGACGGGCTTCATGGCCAAGCGACACCGGAAGAAGCTCACCGGATAGCCAGAAAACCCGAGCAGCTCGGAGAGCTCGGACAACTCGGACCGCACCCGAGGCACCGATTCGGCACGGCTTCGCGCGATGATTCGCCGGCGAGGCCCTTCGGGTGAAGCGCTTGGAGAGACGAGTCCGGGGCCGGTCGGGTGACCCAGCGAGTGGCGAGCGAGTGGCCGAGAGGTGTCCTGGCGAGCGTCTTCTCGAAGGGGAAGCCGCTCCTTGCAGACGCCTCCCCGGCGGGGCGAACCGGAACCGCCCGGG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10161-10764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000013.1 Nocardiopsis coralli strain HNM0947 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 10161 30 93.3 31 .........................C..G. GGATCTCTTCGAGCAGCTCCTGTTCAAGACC 10222 30 96.7 31 .........................C.... GACGGGGGTCGAACCCGTGTCCGTCGGCGTG 10283 30 86.7 31 ...........T.........G...C...A CCTGGCCCAGGAGGAGCTCATCGCCGCCTTC 10344 30 93.3 31 .....................G.......G CCGCTGCTGACCCCCTGGTGGTGTCCGGCAC T [10347] 10406 30 100.0 31 .............................. CGACGTGCGGGTACCCGAACTGGCCGACCGA 10467 30 93.3 31 ............................TG GCCTGGTCGGCGGGTGTCTGGATCATCTCGG 10528 30 90.0 31 ..A..................G.......G CCACCACGAAGAAAGACGCCGTCATGGCGCT 10589 30 96.7 31 .....................G........ GGGAGCCGGATGACGAGGAACAGTCCGTGCT 10650 30 86.7 31 .........T.....A.....G.......G TCGCCAAACTCATGACGACGTGCCCGTGACC 10711 25 80.0 0 ............T............----- - Deletion [10736] 10736 29 63.3 0 ...-G..T.AA......T....A..A.GGG | ========== ====== ====== ====== ============================== =============================== ================== 11 30 89.1 28 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GCACGGCGGTCTTGCAACCCCTCCCACCCCGGAGTCGTGGAGGGCTCTGGGAGCCGGCCCGGAACCCAGGAGGCCGCGCCGGCCGCTTCGGCGGTCGGACCGCTCCGGCGGCTCCGGCCGCCTGAGCCCGCACGTGCGCCCTGCCGCCGTCCTCTGTCGGCCCTTTGCGGGGCCGCTGTCGGCAGAGTGGGGCACGAGCGTTGTGCGCCGAGGCCTGCCGACCGGGGGAGCGAAGCGTGGGGTGTGGGGCGTGGGGGATGCGACGTGGGGCGAAGATCTAGCGCCGGCGGCGAGTGCCGGCCCAAGGCCGCCGGGCTCCCCCCTTCTGGCCCACTGTCTTGGTTGGACCGAGGCCTGTTCTGCGCGCACCCGGCCGCGGCATACTGGGGCCGCGCACACCCGACCAGGACCCGACCACGAACTGAGGCCACGTGTTGTCCGGGGCTGCACAACTTGCAGAAATCTCGGTTGCCCGTCGGTAGGACCGCAGCTCAGGAAGA # Right flank : GACGCGCGCCGAAGGCGCCCCGCTTGACGCCACTGGGACAGTCGGCGACGAACGAGCAGCTGCGCGCGGAAGCTCGGTCTACTCGGAAGGCAGGACGTAGACGCCCTTACCGTTCACGATTCGCACGTAGCCGCGCTCCGCCAAGAGCGCCGTGGTCTTGCGGATCGTGCCACGTGCGACGCCGAATTCCTGCTCAAGCTGCGTGAGACTCGGAATCGGGCTGAGCACTCGGTAGTCACCACGTTCGATCCGCGCGACGAGAACCGCTGCGAGCTGCAGCCACACCGGGTCAGGACCGCTCACCAGCTCGCTCTCGGGGCCGTAGCCGCTCGGAATGCTCGCTTCTCCCATGCGTCAGAGATTGGCACCGTGCGTCAGGGCGGCCAAGTCGAGCCTGTGGATGACAACACAGGCACGGCCGATGGATGGGGCAGACACACTCCTCCCGGGGCGCGCAGCGCCCCTCCAGCTCGCCAGCGATCTGACACGCCCCTGCCCAC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.29, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11404-11737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000013.1 Nocardiopsis coralli strain HNM0947 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11404 30 96.7 31 .............................T CCAGGTGGGCGACCAGGGCCCGCAGCCCCGG 11465 30 100.0 31 .............................. GCTGACACGGTCACGACAGGTTCCGGGTTCG 11526 30 93.3 31 .........................C...G GTCCGGGCTTCTTGTCGTTGGGCATGTTGCC 11587 30 96.7 31 .............................G CTCCAGCCACGGCTGGAACCAGCCCATCGCT 11648 30 96.7 31 .....................A........ CTACCCAGGACCCTTGGATGGAGGCCTGGTT 11709 29 90.0 0 .....................A...-...T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.6 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCAAGAGCGCCGTGGTCTTGCGGATCGTGCCACGTGCGACGCCGAATTCCTGCTCAAGCTGCGTGAGACTCGGAATCGGGCTGAGCACTCGGTAGTCACCACGTTCGATCCGCGCGACGAGAACCGCTGCGAGCTGCAGCCACACCGGGTCAGGACCGCTCACCAGCTCGCTCTCGGGGCCGTAGCCGCTCGGAATGCTCGCTTCTCCCATGCGTCAGAGATTGGCACCGTGCGTCAGGGCGGCCAAGTCGAGCCTGTGGATGACAACACAGGCACGGCCGATGGATGGGGCAGACACACTCCTCCCGGGGCGCGCAGCGCCCCTCCAGCTCGCCAGCGATCTGACACGCCCCTGCCCACAGAGGGGGTACTCCCGGCATACTGGGCCCGTGAACGCTTACCTCTGCCCCTGCATTGGAACTTCGAGCCACGTGTTATCCGGGCATGCACAACTTGCAGAAATCCCGGTTACCCGCCGGTAGAACCGCAGGACAGGAAGA # Right flank : TTCGAGGCGGCCGGAATAGACCCACCGCCAACACGGGTCGAGTGTTCATGGACGGCACACGCGAGCCGGGCGCGTAGCGACCCTCATCGATGCACTTCTCCAGCTCATCGGCGATCTGACGCCATCGCGGCGCGTCCTCTCGAAACTCCACAAGGAGCAAGGGGAGCGCTACTCGGCCCGCGGGATGCCCCGAGGCGAGGACCGCAGGGCAGTTGCCCCGCGAGCAGAGCTCAGTCTCCGGAAGGCTCTGCGATGAACGTTCCCTTGCCGTGAACGGAGACGACAACGCCGCGCTCCCTGAGCTCCTTCATGGCACGCCGAACCGTCATGTAAGAAACCCCGTAACTCTCGGCGAGCTCACGCTCCGGCGGGAGTCGCGATCCCGGTCTGAGCTTGCCGGTGTCAACCGCAGCGGAGATGTGGTCAGCCACAGCCATGTAGCGCAGCCCTGGACCGTCGGCTGGGATCTTCGGTACGTCCTCTTCGTGCATGCGAGCACG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 15318-15911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000013.1 Nocardiopsis coralli strain HNM0947 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 15318 30 96.7 31 .............................C GCATGTGTGCCGACCTTCAGGGTTGGAGTTG 15379 30 100.0 31 .............................. GCCCTTGTTGGGTCCGGGGCCAGGGGTCGTA 15440 30 100.0 31 .............................. GGTATCGGCGGTCGGGCATTTCATCCTCCAT 15501 28 90.0 31 ............--...............G CCGTTACGGTCGGCGTCACTTCCCCCCTTCT 15560 30 93.3 47 ...........A.G................ GCGACAGCCAACGTGCGGGGCACTGCCCGGAAAGGTCGCGACCCTGT 15637 30 93.3 30 ...........A.G................ GTACGCCTGGAGCTCGTCGAGAGCCTCCTC C [15663] 15698 30 86.7 31 ....G......A.G...............T GCACTTCTTCAGGATCGTTGCCACAGGGGAC A [15701] 15760 30 96.7 31 .............................T GCATGCGCAGAAGTCGGGTCTCGTCGAGCGG 15821 30 96.7 31 .........................C.... GGTGGGAGCCTTCTCCCTGAACTCATTACAG 15882 30 86.7 0 ..............T..........G.G.T | ========== ====== ====== ====== ============================== =============================================== ================== 10 30 94.0 33 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CTTCGAGGTCGGAAGCTGCGCTGTCGGGGTCGGGGTCGGGATCGGGGCCCGGGGCCGGATTCTGGTTCGATCCCGGGTTCGAGTTCGGGCGCGGGTTCGAGTTCGGGTCGGGTCCGATAGTTTCCATGCAGGAAACTGTATTGGGTAGTTTCCATGGTGGCAACTACTTTTGCTGGACCTCCTGGCGCCACCGGCATCCGGCATCGGCATACGTGACCGCCGGCCGGCGTGCTCGGTGCTGGTCCGGGGCGGGGCGGCATGTCGCGGGGGCGGTGGCACTACCCCGGGCGCAGCCCTCAGGGGGCAGCCCCCAGGGGGGGCAAGGCACCGGAGTCGGAGGTCGGCGGTCGAGGCCGGTTCCGTGAAGTCGGATCCGGCATACTGGGCCCGTGAACGCCTACCCCCGCCTCCGTATTGGAACTTCGACCCGCGTGTTATCCGGATATGCACAACTTGCAGAAATCCCGGTTACCCGTCGGTAGGACCGTAGGTCAGAAAGA # Right flank : TCCCCGTTCTGCGCGCCGCGTTCTGCGGCGCGCGTTCCGCCGCACGCGCTTCCGACTTCGCCTCCCGCACCCGTGATCCGCCCCGGCGTTCCACGTCCGCGTTCCACCACCGAGTTCCACCCCCACGTTCCTCCTCGGACACCCAGCGCACACAGCAGAGCGCCGCCGGTACTGACCCACCCCCGCCATGCATCCCACCGGCCCCAAGAGGAAACATGGAAGGAACCTCTCGGCTCTGCCGTACGTCCCAGTCGCAGAGCCGGAACGGCCAGGCGCGAACTCTCGAACCTTTCGACACTCGACCCCCTGGACCCTCGATCTCTTGGCCTCTCGACCACGTGATCTCTCGGTCCCGACCCCCTGTCCTCGACCTCGAATCCGAACCTCGGTCTCGAGCCTCGGCCTCGGGCCTCGCTCCCCAGCCGAGCCCCGCCCGAGTCACAAGTCCCGAGTCCCGTCCCTCGACCCCCTAACCACGAGAGGCCCGGATGACCTCCGAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 19041-20169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000013.1 Nocardiopsis coralli strain HNM0947 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19041 29 86.2 33 ...........G.A...........TT.. CGTTTGCCTGAGAGCTTATTGGAGATGTTGGGT 19103 29 100.0 32 ............................. GTCGAGAGGACCCAGTCGGCGCTGCGGTAGAG 19164 29 89.7 30 ...........G.A.......G....... CTAGAGTTTTAGAGCCACGCCTGGCACATG T,T [19189,19192] 19225 29 96.6 33 ............................A GATCCGGTCTCCGGAGAGCATGAACCGCTCCGT 19287 29 89.7 32 ...........G.A..............G TCCACGACGCGGGCGGCTTCCTCGATGTGCAT 19348 29 86.2 32 ...........G.A...........T..T GTTGTGGCCGTCCCAGTGCTCGTCCCAGTCGG 19409 29 86.2 32 ...........G.AT..........T... TGTGGGCTCACGCGCGGCCAGGGCCTCGGCCA 19470 29 86.2 33 ...........G.A.......G...T... CGGGTGGTCGGCCTGACCACCGCGCAGAACGCC 19532 29 100.0 31 ............................. CGGTGCGCGCCGACCACGCCACGGTGTCCCG C [19557] 19593 28 96.6 32 ....-........................ CGGACCGCACCTGAGATCTCGGCCAGCCGGTG 19653 29 86.2 32 ....C......G.A.......G....... CGCTGGTCCGCCCGACCCCCGCGCAGCACGCC T [19678] 19715 29 100.0 32 ............................. CGGACCGCACCGGAGATCTCGGCCAGCCGGTG 19776 29 89.7 32 ....C......G.A............... GGGCCGCCGGCTCGCGCCAGTACCTCGTGGGC 19837 29 93.1 32 ...........G.A............... TCGGCCTCGGCGTCAGTGGTGGCCTGCTCGAT 19898 29 89.7 32 ...........G.A.......G....... TGGCGGAAACCCACCTCGCCCGGGCTCATGGG 19959 29 89.7 32 ...........G.A...........T... GGGAACAGCTTGCGCGGCATCAGCCGCCGGGT 20020 29 82.8 32 ...........G.A.......G..AT... GTGCTGCTGGGCGCCGACATTGTCGCCCGGCT 20081 29 100.0 32 ............................. GCGTCCCACTCATCACGGGTGAAGACCAAGGG 20142 28 75.9 0 ..A.......AG.A.........-A.T.. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 90.8 32 GTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : ACCGGGGACTGAGTGTTGGGGATTGGGCTATGGCCCGCGGGGCTCGGGGCCGGGGTGGAGGCTCGGATCTCAGGTCCCGGGGATCGGGACCTCGGGCCTCGGGCCTCGGGACCCGGCCTCGATATCGAGCTCGGGATGAGGGCCAGGCGTGCGCATGCGTAGGCCTGCGTAGGCCTACGCACACCCGCGCACGCCTCCTCACGCCTCTCGCCTCAGGCGTGCCCCCACGTGTGCGGCCCGGCATCCGTCTCGGGCGTGCGGCCTCACGGGCTCGGGAGGCCCAGAGGGCCCGGCGGTCCCAGCGGTCCCAGCGGTGCGCCTTCCTGTACGCACCGGGGCCTGACCCACGGGCACGGGTTCCCGGCATACTGGGGCCTGTGACCGCTTACCCCTCTCCTTGCACCTGTCCCTGTACTGGAACTACGACCCACGTGTTATCCGGACATGCACAAGTTGCAGATTTCCGGGTTACCCGCGGGTAGACATGCAGGTCAGGAAGA # Right flank : CCGAGCACCCCTGGTGCCGTGTCAAGCAACGCTTGACCTGCCCTCACCTGCATTTCTGAGACGATCGTCGAAGGAGTCCGGTGCGCTCGCCCAGCCCCGTCACCGGACCGGACGGCGAAGACATCGAGACGGTCGACGAAGCTGCAGGAGCAGCCATGGCGAAGCTGATCTACGCGTCGAACATGTCGCTCGACGGCTACACCGAGACCGCAGACGGCGCCTTCGACTGGGCTCCGCCGGATGACGAAGTCTTCGCCTCCATCACCGAGATCATGCGGTCCGCGGGCACGTATCTCTACGGGCGGCGCATGTACGAGACGCTGGCCGTGTGGGAGACCGATCCGACCCTGGCCGCGCTCTCCGACCTCACGGCCGACTACGCGAGCGCTTGGCAGGCGGCGGACAAGATCGTCTACTCCACGACCCTGGCCGCAGCGGACACATCCGCAACGTCGGCCACACCGGCCGCTCCGGCTACGCCGGCCGCGCCCGCCACTCCG # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [17-17] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 22081-22720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000013.1 Nocardiopsis coralli strain HNM0947 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22081 29 86.2 32 ...........T.........A...T..G TAGTGGAGGTGGATCGTCTTGAAGCTCTCCGG 22142 29 93.1 32 ..A..................A....... CACACCGCCCCCCACACCGAGTAGAGCGCCTC 22203 29 96.6 32 .........................T... GCGCTCTGCAGCAGCGCGTTGGCCGAGTAGTC 22264 29 86.2 31 .............GT......A.....T. TCAAGAGCGAACCTGATGTAGGGCTCCTCCG 22324 29 100.0 32 ............................. ATCTGCTGGGTGGTGGCCTTGATGATGAGCTC 22385 29 96.6 32 ............................T TCCCGGCCCTTCGTCATGTCGGGGCACGGTAG C [22389] 22447 29 96.6 32 ........................A.... GCGACCGGGAGACCGGAGGCGGTACTCACCCC 22508 29 93.1 32 ..................A.........T CGATCTCGTCGAGCTCGTCGACCAAGCGCTTG T [22533] 22570 29 86.2 32 ..A.....AC...........A....... CAGGCCTGCGAGCGCAGGGCCTCGTAGAGCGG 22631 29 82.8 32 C.C.........G.A......T....... CACAAGAAATACCTGACCGAGGCCGCCCGGTA 22692 29 75.9 0 C.......T....GT......A...A..G | ========== ====== ====== ====== ============================= ================================ ================== 11 29 90.3 32 GTGCTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : ACCCTCTTGCTCCTCTTGATCCCGTGGGCAGGGCGGGATGGGGGCTCCGAGTGGCGACGTATGCGGAGCTGTGCGAGGTCCGGGAAAGGATCCTGGACGCCGGGCTGCCGGCCGGGCCGATCGAGACCCTGCCGACGCAGTGGACGATGACGGTCCGCGACCCCGACGGGCGCCCCGTGGACGTGCGGGCGCACCGGGATCGCGGAGCGACGGCGTAGCCGTCCCCGGCTCCCCCGGCGGGCCGGGCGGGCGGAGCGGGCGGTCCAGCGGCCGGCACACGACGCCCGGAGGCAGAGCGGCAAGGCGGCAACGCCGCTTCCCAGCTCGCCGGATCCCTGTCCGCCTGGCCCGAACCCGTTGGCGTTAGCCGTTAGGCCTTCGGCGTTCGGCATACTGGGCCACGTGGCCACACCCTCTGGCCCCCGATCCACCCGTTACCCGCACCAGCACAACTTGCAGACCTCCGGGTTACCCGCGGGCAGCCATGCAGGTCAGGAAGG # Right flank : GCGCCCCTTCTACCCCCGCCGCAATCCGGCGCCCGTGGTGGCGTTCAGCTCCCTACACTGCTGGGGGTGGAGGAACAGGAGATCATCGGGCTCGGTTCCATGGGACGGCTGTGGATCGTGGGCGAAACCGTGCGGCGCGAACGCGGGCCCCACAGCGACACCATCGCTGCCCTGCTGAAGCACCTCGAGAAGCGCGAATACCCCTACTCTCCGCACTACCTCGGCGTCGACGAGCACGGACGCGACATCCTGAGCCGGGTTCCTGGCGCACCCGTGCCGACCTTGCGCGGCGACAAGCAACTCATCGACGTCGGCCAGGCCGTGGCAGGCTTTGCCGACGCCGTGCGCGATTTCCGCGCCCCGTCCAACGCGACCTGGCGTAACCCAGAGGGTTGGCCCCTGCACGGCGACACCGTGATCCACAACGACATCGCGCCGTGGAACATGTTGGAGAACGAGGTCGCAGGCGCTCCGCGCCTGTCCGGGCTGGTCGACTTCGA # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 30552-31137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGI010000013.1 Nocardiopsis coralli strain HNM0947 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30552 29 93.3 31 .................-...........A CGCGCATGTGCGTCTCCGGGGGGCGAGGCAT 30612 30 90.0 31 ...........G.A...............C TGAACCGGTCGATGCTCGCCATGCCGAGCGG 30673 30 90.0 38 ...........G.A...............A CGAGGAGGCTGAGCTCTAGCCTGGCCGCGGCGGGCGCG 30741 30 86.7 31 ...........G.A...C...........C TGCACGTGACCCACCGAGGGAGCCGAGGCGG 30802 30 100.0 32 .............................. GCACCCGCACGATGGAGGCCAAGGGGTGGGTG 30864 30 93.3 31 .....................A.......C TCTCGATCTCGGGCGGGTCGATGCCGACCCC 30925 30 93.3 31 .....................A.......T CACCGTCTGCCCGGTAGCCCGGGTGATGTAG 30986 30 100.0 31 .............................. CCCGGTGCCGCTCGTGCTGCCCGGCTGTGTG 31047 30 86.7 31 ...........G.A..............GA AGGAGTGAGAGGACACCCGGACCTTACGGTC 31108 30 86.7 0 ...........G.A...........A...T | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 92.0 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCCG # Left flank : CACGAAGCAGGTGAGCGCTGCGTAGCCGGCCGCTGAGGTGGCCACCAGGAGCCATGCGCGCAGCATCGGCCAGGCCGACCGGGGAGACCGGGGAGACCGAGGGGACCAGGGAGACCAAGGAGACCGGGGGGATTTGAGGGGGGAACGCACGGGCGGAACCTTACAGGGCGGAGGCGGAGACGAAGGGAGAGGCGGAGGCGGGAGCGAAAGCTGGGCGGAGGCGAAGGCGAAGGCGGTGCAGGAAGGTCAGCGGGACAGCGGGAAGCGAGAGGGCGGTGGTTCCGCACGGATGGGGATGAGACAGGCCGAAGCCTGTTCCGTCAGGGCTGGGTCCCGTCATACTGGGCGGTGGCTATGCCTTTGGATCTTCTGGAGCCCTGGGGGTCTGGATTCGCTGGATTCGCAGGGGCCATTTTGGAACTTCGACCTACGTGTTATCCGGACATGCACAACTTGCAGATTTCCCGGTTATCCGCTGTTAGGACTGCAGGTCAGGAAGA # Right flank : TCATCCCGATCGCCCAGGAGAAGATGTGACCGATCTCCGCACCCAGCATGAAGCCACAGTCGCCTATGACGCCCTGAACGACAGCGCACACGCACTTCAGGCCCGCTACATCTCCCTTTCCCGCGATGCGCTCGGCGATCCCCAACAACAGGAGGCCTGGAACGCGCGGGTACTGAACGCGCGCGATGCGGTGGCTGAGGTCGACCCCGACAACCTGAAGGCCATCGAAACCCTGACCGAGCAGTTCCGACGTGAACTACGCGAGCTCAAGGACGCCGGGTGAAGGCCAGCTGCGCGCAGACCGGGGTGCAGGCCCAGGCCCAGGCCCAGGGCCGGCGCCGAGTCCGTGTCATGTTCAGTGCTTCCCGCCATGCGGGCATGGCACGATGCGCGCGGCCGTCTCAGGACTCTTCACGAGCGCTCCCCGCGCACGCGGGGGTGGTCCCATGAGCAGGTCCGCGGCTACGGAGCCCTTCATGTGCTCCCCGCGCACGCGGGCG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCCG # Alternate repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //