Array 1 1000440-1001691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056232.1 Citrobacter freundii strain RHBSTW-00965 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1000440 29 100.0 32 ............................. TGGGTGCCAGCGCGTAGCTGTGTGACGGCGTC 1000501 29 100.0 32 ............................. CGGGTGAGGGACTTCAGGCTCGCGGTCAGAAC 1000562 29 100.0 32 ............................. TTGAGGTTTTAAGCCATTGGCAGTAAATCAGG 1000623 29 100.0 33 ............................. CTCGCAACGGGAACTATCAATAATGCTCACTAA 1000685 29 100.0 32 ............................. ACGCCCCGGCATTTAACTACGAGTAAATTTTA 1000746 29 100.0 32 ............................. ATGCTGGATCAGCCACCGCAACCATTTACAGG 1000807 29 100.0 33 ............................. CAGATCAGGAGTGTCAGAGGAAATGACGCGTGT 1000869 29 100.0 32 ............................. AGCAACGCAGGAAAATTGCCCGTCGTCTGGAA 1000930 29 100.0 32 ............................. TCTAACGACTGGACAGAAAACGGTAGATTCAT 1000991 29 100.0 32 ............................. GAATGGGCGTTACACCCATGACGTCGGATATG 1001052 29 100.0 32 ............................. CCCGTCAAAACTCCGCGAGAAGTGGGACACCC 1001113 29 100.0 32 ............................. CGATTGACCAGTATCGTATTGACGACCTAAAA 1001174 29 100.0 32 ............................. CCTGTACCCGTTACGGTGTCATAGGTGCTTTT 1001235 29 100.0 32 ............................. CTCACTTTTATTCACCTGGTTAACGTGATCGT 1001296 29 100.0 32 ............................. GGGTGGGGGTCCGCAGCCCAGACGAACGTAGA 1001357 29 100.0 33 ............................. CGCATGAACGGACTGTTGCTGGAAAACGCCAGC 1001419 29 100.0 32 ............................. ACACGGCAGCGAACAGAACGGCAGCGGACTAC 1001480 29 100.0 32 ............................. TGATCCGGGCGCTTAACCCTGCCGGATTCATG 1001541 29 100.0 32 ............................. TATCGCCGAGGATTTGCGCAAAGGCTCCGGGA 1001602 29 100.0 32 ............................. TGGCGTTATTGGAATTTCAGTGGGGATCATTT 1001663 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGGTGACCGTATCGCCGAAGGTGAATATGCGTGGCGGTTATGATGTGCTCTCGCAGGCGCTGGAGCGCGCGAATGAAATCAAACATCCGGTTGGTCGCGTTCGCGATATTGAAGCGCTGGATGAACTGCTGGCGACGTTGAGTGACGACAAACCGCGAATCATCGCCTTACAACCAATCAGCCAGAAAGAAGATGCGACGCGTTTGTGCATTGATACCTGTATTGCACGCAACTGGCGTCTGTCGATGCAGACCCATAAGTATCTGAATATTGCCTGATTTGGCTGTATCAACAAAAGCTGAGAATGGTCCACTGAAACAGTGGACTTTTTCGAATATCAGATTGTTTTTTCGGAGACGGTGGTGAAATCCGAGAATGTCTACAGATGAATATCCAGATATAATAAAATCAATATGTTAGCGATCTTTGTCAATCAGGGAAAATCGGTAGAAATTTTATAGCTGTAAAAAACTAATAAATTCAATTCGTTGCTTTTAGA # Right flank : GGCTTGGGTACTACTGGATATGGGGCACCTTTGCATTATGATTATTATAAAAAATCATTTTCACATAATACAATCTGTATTAACGGGAAAAATCAGCCTCCAATAAATCCAGTTGTCAAATATTATAACGATAATAATGGCAGCGTGCAGATCATTGCAGAAGTTGACTGGAAAAATCCCCCAGTGTTGCCAGATAGTAATACTCGCATTGAATGGGATAATGAAGTATATAAAGATGTTTTGTTTCGTCGAAATTTAATATCTAAAGAGAATATTCTTATTGATATCCTAACAATTGAAAACCCACATAATCAGACTGTAAATACTACATATCTGATAGATGCTGATTTAGTTGGTCCTACTGAATATGATAAATATAGTAATGCTTCAGGTAATGATATTTTAGTGGGTACTGGCGTTCGCTTGTTTGATTCGACTAAGATCACCTATCAGTCACTTAATAAGTTGAATATTTATTGTATGTCATTAGGAAATAGTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1021716-1023821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056232.1 Citrobacter freundii strain RHBSTW-00965 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1021716 29 100.0 32 ............................. CGATAGCGGCCTGATGCAGTATCCCGCGCCGG 1021777 29 100.0 33 ............................. CCCCGAAAAAATCCCTCACAGATGCGATCAAAA 1021839 29 100.0 32 ............................. CGAATAACTGAAAAAATGGTCACGGGTGCAGC 1021900 29 100.0 32 ............................. CGCGTCATTCTCAACGGGAACAGAATATTGGT 1021961 29 100.0 32 ............................. ATGAAGATGTGCCGTATTTCGTTGACGCTATT 1022022 29 100.0 32 ............................. GCGACATTTCTATCTATTTCTCATTCTATCTG 1022083 29 100.0 33 ............................. CACATAACCCGGCGCGATGGCCGATACATCATC 1022145 29 100.0 32 ............................. TAATCATGGCGGCGATCACGTTTGACGCCGCT 1022206 29 100.0 32 ............................. CAGATCGCTTGACGCCTCCACGACGGCGCACC 1022267 29 100.0 32 ............................. CAGGCAAAAGTTGGCTGGTTTGAATCGGCAAA 1022328 29 96.6 32 ............................T CAGACAGACGCAATGATCGTCGTTGTTCGTGT 1022389 29 100.0 32 ............................. AAAAAAACGCCGTCAATTAAATGGATTACGCA 1022450 29 100.0 32 ............................. CGCCCCGCTGCGTGGTATTCGTCAGCAGGTCA 1022511 29 100.0 32 ............................. CATTACGCGCAGTGGGTTGATCCGGAGCTGGT 1022572 29 100.0 32 ............................. CGGCCACACAGGCCGCTATAAACAATTCTTTA 1022633 29 100.0 32 ............................. ATGCCCGAGGGGGTCACACTAAAGACGCTGAG 1022694 29 96.6 32 .................C........... GGCTTTTTGCGCTTCCCTGGTGCTGAGTGATG 1022755 29 100.0 32 ............................. CGCTCTGACGCGCGTCCTCACATCGTCATGTA 1022816 29 100.0 32 ............................. ATAGAGTTTACCAGCAGCCAGGCTCTCTTTCG 1022877 29 100.0 32 ............................. CGCGGAGTCTGACAGTGATTGAGGATATCGAT 1022938 29 100.0 32 ............................. ATCCAGTCCACCCCACAAACCCACGATCAGAT 1022999 29 100.0 32 ............................. TTAACATGATAATTTTCTCCCCGACTCAGTGT 1023060 29 100.0 32 ............................. CTGCCTCTGGCGGCGCACTTGTCTATGACCCC 1023121 29 100.0 32 ............................. ACAGGGGATGAGGACGTGCCACCGGAAGAAAA 1023182 29 96.6 32 ............................T CAACTCGGCGTTGCCAGACAGGGCAATCAGGT 1023243 29 100.0 32 ............................. CTGCGCGCAATCCGGTTTTTATATCCTCAACC 1023304 29 100.0 32 ............................. TAGATGCAACATCGCCAGGTGGTATCACTCAT 1023365 29 100.0 32 ............................. CGCCCCCGCCACCATGGGAACTCCGCGCGACA 1023426 29 100.0 32 ............................. TCAATAAATGTGCAACTGACAAAAACTGTATA 1023487 29 100.0 32 ............................. CGGCGTTCCGAGCTGCAATCGGGGTAAATGAA 1023548 29 100.0 33 ............................. CCTGTTGATCTGGCGTGGTTTTCTCCAGACTGC 1023610 29 100.0 32 ............................. GGAAATGTAACCGTTAGCACCGGGACTAGCGC 1023671 29 100.0 32 ............................. CGCTTTTAAAAATCTGAACAGAAAAGATAGTG 1023732 29 96.6 32 ............T................ AATACTCCTGAATTAAAAGTGGTCGCTGTCGT 1023793 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATCGAAGATGTTCTCGTGGCAGGTCAAATCCAACCGCCGTTACCTCCCGAAGATGCGCAGCCCATCGCAATCCCACTTCCTGTTTCTTTGGGGGGTTCTGGTCATCGGAGCAACTAACGATGAGTATGCTGGTTGTTGTTACAGAAAACGTACCTCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTGCTGGAAATTCGCGCAGGTGTATACGTTGGTGATGTTTCAACGAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGAAGAAGGGAACGTTGTCATGGCGTGGGCAACGAATACGGAATCGGGTTTTGAATTTCAGACATGGGGTGAAAACAGACGAATTCCGGTAGATCTCGATGGATTACGATTAGTGTCGTTTCTGCCTGTTGTAAATCAATGAGTTAACGATCTTTAAAAATACGGAAAAGTTGGTGGATTTATTGTATGCCAAAAAAGGCTTAAAATTCAGTTGGGTAGTTTTAGA # Right flank : GATTATGGAGTTACGCATTGAGCCGGTGACAAAGTGTTTCCTGTTGGCTCGGGGCAAAAATAGCCCAATGGCTTCATCGAAAGTGGGCTAAGAGTTTTTACCCGCTTTTGCCAGTTCTTTTACCAGCGGCAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCGGCCCGGTAACGCTTTATCGATGTGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAATGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGGTTCCAGTTGGTCGCTTCAACGGAGAGAACGGCAATCCCTGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTGCCTTTCGGATAATCTTTGTTCAGACCTGGATTGGTGCTGGCAACGATACCGCGGCTGTGCGCGATAGCCAGTGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //