Array 1 942626-944057 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BBS1406 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942626 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942687 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942748 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942809 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942870 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942931 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 942992 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 943053 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 943114 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943175 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943236 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943297 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943358 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943419 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943480 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943542 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943603 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943664 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943725 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943786 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 943847 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943908 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943969 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944030 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960190-961178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BBS1406 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 960190 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960251 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960313 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960374 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960435 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960496 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960557 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960618 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 960679 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 960740 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 960801 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 960863 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 960924 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [960966] 960966 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961027 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961088 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961149 29 100.0 0 ............................. | A [961176] ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //