Array 1 200404-198239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQA01000017.1 Escherichia coli JT5 Contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200403 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 200342 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 200281 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 200220 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 200159 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 200098 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 200037 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 199976 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 199915 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 199853 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 199792 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 199731 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 199670 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 199609 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 199548 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 199487 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 199426 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 199365 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 199304 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 199243 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 199182 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 199121 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 199060 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 198999 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 198938 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 198877 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 198816 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 198755 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 198694 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 198633 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 198572 29 93.1 32 ...........C...C............. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 198511 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 198450 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 198389 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 198328 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 198267 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227004-226121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAQA01000017.1 Escherichia coli JT5 Contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227003 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 226942 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 226881 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 226820 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 226759 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 226698 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 226637 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 226576 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 226515 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 226454 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 226393 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 226332 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 226271 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 226210 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 226149 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //