Array 1 440705-441648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026979.1 Pectobacterium parmentieri strain IFB5432 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440705 29 100.0 32 ............................. CCGATTCAAGGGCAGATGCGCGGTCTATTGTT 440766 29 100.0 32 ............................. CATTTCAGACCCGAATTTAAGAGCCGCTTGGT 440827 29 100.0 32 ............................. TTGTATGCAATTAGCGACCCGTAAAACCCGCC 440888 29 100.0 32 ............................. GGCTTCACATGGCACAAAACAAATCGGCGCAA 440949 29 100.0 32 ............................. TAAAACGAAATGGAATACAAGGAAATGGGATG 441010 29 100.0 32 ............................. GATGAGCAAATGGAAACGATCAACTATAACGG 441071 29 100.0 32 ............................. AATTACCAGATGAGGCGTATGAGTATGGGGAT 441132 29 100.0 32 ............................. ACGTAAAGCCGCACAGGCACCTCGCCGGGAAG 441193 29 100.0 32 ............................. TCGTCGATTCAATGAAGGCGTATGGCGGAATC 441254 29 100.0 32 ............................. GATTGCGTCAGCGCCGTCAGAAAATGCCTTTG 441315 29 100.0 32 ............................. AGGTGTACCGCACCGCTCTGGAGCAGTCTGGT 441376 29 100.0 32 ............................. TTATTTAGTGGAATTCGGCCTGACGCCAGCGG 441437 29 100.0 32 ............................. CCAATGGCACCGGGGATAGATGTAATATCAGA 441498 29 100.0 32 ............................. CCACTCTGCGCCGCATTGGTGCTAATACAGAT 441559 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 441620 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGAGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 443518-443790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026979.1 Pectobacterium parmentieri strain IFB5432 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 443518 29 100.0 32 ............................. CATGGATAAGAGCGACGTAGGAACGCAATTTG 443579 29 100.0 32 ............................. CTATCGTTTGCGAACGTGCATCCTTGCCCGTA 443640 29 100.0 32 ............................. CGTTACTACGCAGTGATGGGAATATTTCTGGC 443701 29 100.0 32 ............................. GAGAAAGAGCGCGAGCTAAAAGAGTTGCGCAC 443762 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGG # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3938677-3938945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026979.1 Pectobacterium parmentieri strain IFB5432 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3938677 28 100.0 32 ............................ AACATCGCCACGGCGAAAAGTGTGTTCATGGC 3938737 28 100.0 32 ............................ TCAACTCTGCCCGTTGCTGCTGTCGGCGGGTA 3938797 28 100.0 32 ............................ ATCTACGAAGCTGATTATTGGTATGGGCCGCG 3938857 28 100.0 32 ............................ TCAGAAGAAATTCCGTAGTCTGTTGAGAATGT 3938917 28 89.3 0 ............GC..........A... | G [3938943] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3956173-3959266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026979.1 Pectobacterium parmentieri strain IFB5432 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3956173 28 100.0 32 ............................ AAACGCATCAATGAACGGCACTGCGCCGCGAT 3956233 28 100.0 32 ............................ CTTCCGAAGTGGGCAATGACATCTTGCTTTCG 3956293 28 100.0 32 ............................ ACCGACGCCCCATTGATTCATGCGACGAGCAC 3956353 28 100.0 33 ............................ CTGATGAAAGCCGAGAAAGCCGAGCGAAACGAT 3956414 28 100.0 31 ............................ AGATAATTTACGAAACGCGATATCGATGCGC 3956473 28 100.0 33 ............................ AACTCGCGGACTTCCCGAGCGTCACCGCTACAG 3956534 28 100.0 32 ............................ ATTACGGATAAATGGGGTGACACTCAGGATTG 3956594 28 100.0 32 ............................ AGCCACGCATCCAGATACATCGGGCAGTCAGG 3956654 28 100.0 32 ............................ CAGATCACGGCGGTTTTGTTCTTGCGCCATGT 3956714 28 100.0 32 ............................ AATTCCACTGGAAAAACTGACAGCATTTACAA 3956774 28 100.0 32 ............................ TAGCGTTAGAGCCGGGACTCATCTCGTTTTAC 3956834 28 100.0 32 ............................ CGTCATCAACATCTACGCCGACGGTTCATTTA 3956894 28 100.0 32 ............................ TTGCCCAGCAACTTTATAGCCAGTTGAGTAGA 3956954 28 100.0 32 ............................ CGTTTGCGGATTTTTTCATTGCATCGCTGACA 3957014 28 100.0 32 ............................ GTCCGGACGGCAATCATTTTAGCATCGAGCAC 3957074 28 100.0 32 ............................ ACGCCGGTGCTGTGGCTGAAAGACGTCCTGAT 3957134 28 100.0 32 ............................ AGGCGGTTGAAATCTGGCTGCGTCGCAGGGGA 3957194 28 100.0 33 ............................ CCAGGGCAGGAGGGAGATGAAACACGCAAGGGA 3957255 28 100.0 32 ............................ TGCTAACGCGGAAATTTGACCGAATGAGGGGG 3957315 28 100.0 32 ............................ ACTAGCGCCGCCCGGCTTGCTTGCCATGCTTC 3957375 28 100.0 32 ............................ GATTGACATACGCACAGGCTGTTTACTGGATT 3957435 28 100.0 33 ............................ CACCGACAGACAGATTATCCGGCAGACTGGTGA 3957496 28 100.0 32 ............................ ACGAAACAATAAACCCATTAATGGTATAAGTT 3957556 28 100.0 32 ............................ CATGTCATTTTCACCTGAGCGTTAGCATTGTT 3957616 28 96.4 32 .............T.............. TACGCGATGACGCTGCCCGATAGTGCCGCGTT 3957676 28 96.4 32 .............T.............. GAGACGTACAAGCCCCAGCTTCAGGAGGGTAG 3957736 28 96.4 32 .............T.............. GCTGCGACGCCTCGGCAGCCGACACCCGCATC 3957796 28 96.4 32 .............T.............. GAAGTCACGCTGGAGTTTGACGATCTGCCCGA 3957856 28 96.4 32 .............T.............. AGCTTGTGCGCGATGGCATAGCGGGCAATCTC 3957916 28 96.4 32 .............T.............. GAGCGGGTGATCGTCAAAGAGGTAGACAAGGC 3957976 28 96.4 32 .............T.............. GCAGATACGAATACCAACTTGACCCACTACTA 3958036 28 96.4 33 .............T.............. CCCCTTCCCCCGACCTAATCTGTCATTTCTAAG 3958097 28 96.4 32 .............T.............. AAGGTGCCGAGCCTCTTGACCGATAATGACTT 3958157 28 96.4 32 .............T.............. CGCTAACGTGGGGAAATATGACTCAGTCGTCC 3958217 28 96.4 32 .............T.............. AATCCCATAAAACAAAAGCCCCTGCATTTCTG 3958277 28 96.4 32 .............T.............. AGTGAATACCACGCCACCGACAGGTGGTTTTT 3958337 28 96.4 32 .............T.............. TAGGCGCTTGCTGGCATCCGGCACGTTAAATA 3958397 28 96.4 32 .............T.............. TTCAATTCGCCGACTTATTAGAGCTAACGGAA 3958457 28 96.4 32 .............T.............. AATATTAATACAGGACAACCGACATATATCAA 3958517 28 96.4 32 .............T.............. TGTGATGTAATAACTGAGTCCGGTCACGGCGA 3958577 28 96.4 32 .............T.............. AGATACCGAGCCCCTTGACTGCAATTTAGTGC 3958637 28 96.4 32 .............T.............. AGAAATACCCTATGTCATTCTGGATAAATCAA 3958697 28 96.4 32 .............T.............. CTGGTCGAATAGCAGGGATAACCGGCAATGTC 3958757 28 96.4 32 .............T.............. AGACAAAGATTATTGCCTGATATTCGATCACT 3958817 28 96.4 32 .............T.............. GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC 3958877 28 100.0 32 ............................ CAAATCGGCGTTCGACTCCCACGCATCGGTTT 3958937 28 96.4 32 .............T.............. ATAAAATCCGCCAGTTGGGTAGACAGGCGGCG 3958997 28 96.4 32 .............T.............. TGTACTCACGCCCACGATCATCATTGTACAAA 3959057 28 100.0 34 ............................ GGCGCGACCGTGTTCTAGACGATTTACGGGACAC 3959119 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 3959179 28 100.0 32 ............................ GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 3959239 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================== ================== 52 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //