Array 1 9588-14620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNI01000061.1 Lacticaseibacillus paracasei strain 275_LPAR 911_15063_245917_242+,...,581_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9588 28 100.0 33 ............................ CCGGCTCTGGCTGTCGCTTGGTTGAAAATTTGC 9649 28 100.0 33 ............................ CTGCCGAGTGAGCCAGCGGTGCCAGCGCATTCA 9710 28 100.0 33 ............................ CTCACTGACCATACCCCGCTCAGAAGGAGTAAG 9771 28 100.0 33 ............................ TAACTGCTGGTGACACTTCAATATCTCGTATTG 9832 28 100.0 33 ............................ TTTATTCTCAGGACTCGGAGGATGAGGTATTTG 9893 28 100.0 33 ............................ TTCTCATGACTGCGAGGAAAGGCTGCTCATTGA 9954 28 100.0 33 ............................ CAATACTTTCGCGCCGAAGGTTGATTCGATTGG 10015 28 100.0 33 ............................ TAACGTCTTGCAAATCGTGCAAAGCTTGGACCA 10076 28 100.0 34 ............................ CGAAACTTGTATTCATATACGTTCTGAAATCATT 10138 28 100.0 33 ............................ GAGATACCATGAAACGTATCTGAGATGAAAGAA 10199 28 100.0 33 ............................ TATCCGTCAACCTTAGGCTGAGGAAATCACTCA 10260 28 100.0 33 ............................ CAAAGGCCAAAAATCATCGTGTAAAAAATTAAA 10321 28 100.0 33 ............................ TAGACAAATTGAACCGTTTCATAGCCTTTTTAC 10382 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 10443 28 100.0 34 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGGG 10505 28 92.9 33 T...C....................... TAATAGACGCAATACATTTCAAGCTCTGGTTGA 10566 28 100.0 33 ............................ CAAATTGCTAATAATCTTTGCCATTATTTACCA 10627 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 10688 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 10749 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 10810 28 100.0 33 ............................ TATGGTTCCTTTGCCTTAGATTATCAGCCGTAA 10871 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 10932 28 100.0 33 ............................ CAAGTACCGAATAAAAAGGAGACTAAAAATGCT 10993 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 11054 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 11115 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 11176 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 11237 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 11298 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 11359 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 11420 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 11481 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 11542 28 100.0 33 ............................ TTTATTAGAACTAGCTGAAGATGGAACAACTGA 11603 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 11664 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 11725 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 11786 28 100.0 33 ............................ CGGTCACACGTTTGATATCTATGCCGAATCATT 11847 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 11908 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 11969 28 100.0 33 ............................ CAGTTCCTACCTGACTGTCCCACCAAGGTGCCG 12030 28 96.4 33 ....G....................... CGCAACCGCCGGGATTTGAACCCGATAAGGCCA 12091 28 100.0 33 ............................ CCATGCACGGGCAACGGCTACTTGGTTGTCAGC 12152 28 100.0 33 ............................ CGAACGTAACAACGTGGCCACCATGTTTTCGCG 12213 28 100.0 33 ............................ CCGCTGTAAGATTTACATATTCTTGAGAATTGT 12274 28 100.0 33 ............................ TCGAAAGAGGTAGAAAACATGAAAACAGCAAGC 12335 28 100.0 33 ............................ TCCTAAGCTGGCTTTGTTGTTAGGCATTAAAAA 12396 28 100.0 33 ............................ CTCACTAGCAATAGCCTGTGCATATCGGTTAAG 12457 28 100.0 33 ............................ TACATCAACAAAGAGTATGACGTCAGCGGCACC 12518 28 100.0 33 ............................ TGACATCATCACACACAAGGAGCCATACCAAGC 12579 28 100.0 33 ............................ TCGCCATTTGTGAAACATCTTGTATTTTCCAGA 12640 28 100.0 33 ............................ CTATTATGGCGCATTAAATACTAGTTGACATTC 12701 28 100.0 33 ............................ TTATTGTCAAAACCACCGTAGTTTTGGCCTGTT 12762 28 100.0 33 ............................ TGAAATATCGTAAGAAGCCGGTTGAAATTGAAG 12823 28 100.0 33 ............................ ATCCTTACCTTTAGCAATGCTAATCAGCATAAG 12884 28 100.0 33 ............................ CAACTGGCGTGCTCGCTCGTGCATGGTGGGAAG 12945 28 100.0 33 ............................ CGACTTGGACGCGCTCAACTATGATCTTTTCCT 13006 28 100.0 33 ............................ CGTGCGGGTCTCAGGTAGATGTCGAATCAATCA 13067 28 100.0 33 ............................ TGAATACGATTCAGACGGCACACAGTCCAGTGA 13128 28 96.4 33 ...........G................ CCTTATCGCAAGTAATAGGTACCATATTAAGTT 13189 28 100.0 33 ............................ CAGCTTGCGCACACAAATGACAAATGCCGAAGC 13250 28 100.0 33 ............................ CAACTCGCCTATATTCTTCTACTATGGCGAAGA 13311 28 100.0 33 ............................ CAGTGCGGCGAATAATAATACCAGTCCGGCAAG 13372 28 100.0 34 ............................ TCATAAAGAAGGAGGTGATGATGAGTGGCTAGTG 13434 28 100.0 33 ............................ CACCGTTTTTGCAAATGGTCAATGACGGTTTCA 13495 28 100.0 33 ............................ CAACGTTTCGCGTAATCTTAGCAAACACTAGAT 13556 28 100.0 33 ............................ CTTATTATATTTTGGAATGGCGTGCCGAGGTTT 13617 28 100.0 33 ............................ TACATATGCAATTTTTCCACTAGTAATAGAAAC 13678 28 100.0 33 ............................ TATACCGTTTTGTTTCATTTGCTTTTTCTAATT 13739 28 100.0 33 ............................ CCTGAGCAGTGCCCAGAATCTTGATTGCTTGTT 13800 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 13861 28 100.0 33 ............................ CTAGGGGGTTAGATAATGCGAGCAATAAGCGTA 13922 28 100.0 33 ............................ TTTATGAGTATCAGCCAGCACAAAACGCAATGG 13983 28 100.0 33 ............................ CTGCTATCCGATCGTGGTCGACCCACGTACAAA 14044 28 100.0 33 ............................ CAACAACCGAATGGAAACCCTGAACAACAACCG 14105 28 100.0 33 ............................ CTCGCAAGCGACAACCGGCAAGAATCTTACATC 14166 28 100.0 33 ............................ TCGTTATGAGGTGCAGCTTCGCAGAGACAGGGC 14227 28 100.0 33 ............................ CAAAAGTTAATTTCTGGTACTGGAGCAGGATTA 14288 28 100.0 33 ............................ TATTTAGGAGGCATTCAAATGGCAACAGTAGGT 14349 28 100.0 33 ............................ CGCAAAATAGGCCGCAAATATTTAGAATAAAGG 14410 28 100.0 33 ............................ CGTGTAAAAGATCAGCATTCCGGTTCCACCCCG 14471 28 100.0 33 ............................ CATGGCTAGCGATGGTATTATTTCTGGGGCTGA 14532 28 100.0 33 ............................ TAAAGAATAAAGGAAAAAATATTTTGTGTTCTA 14593 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 83 28 99.8 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CAGTAGCCTCTTGGCTAAAATAGGCTTTTATTTGTTTTCCCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCAYGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 344-2558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNI01000080.1 Lacticaseibacillus paracasei strain 275_LPAR 931_22669_375726_459+,784+,537_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 344 36 100.0 30 .................................... CAGAAAAGCAAATATGGGGCATTATCAACC 410 36 100.0 30 .................................... TTCGTGTTTAAAGTCCAATTGGTCGTTAAC 476 36 100.0 30 .................................... CGATCAGAGGTTGCTCGATATGAAGGCTTC 542 36 100.0 30 .................................... TATATATCAACGCTTTAGGATACTTGTGTC 608 36 100.0 30 .................................... ATGTCCATCAGCATGCGGCTCAATGACCTT 674 36 100.0 30 .................................... GGAGGCAGAACGGCAAGGCCTTACAAGCTG 740 36 100.0 30 .................................... TTACTCCATAAATTGGCGGTCGCTTCGCTC 806 36 100.0 30 .................................... CGCGTTAGCAATCACAACCGCGGATCACAG 872 36 100.0 30 .................................... AAAAAGCGCGTAAATCTATGCACATAAGCG 938 36 100.0 30 .................................... TCAGTACCACTTGCTGTTACCCAGTTATGG 1004 36 100.0 30 .................................... ATTATTTCGTACAGTCATTTTCAATGTTTC 1070 36 100.0 30 .................................... GGTGAATTAGCACAGTTGCATAGCAAAGAC 1136 36 100.0 30 .................................... AAAGCAAAAAAAGATGAATTACGAAGAAGC 1202 36 100.0 30 .................................... ATACCATAGAACCATGTTCCCTTTATGCCT 1268 36 100.0 30 .................................... CGTGCGCAACTTGATCAACTAGCATCAGCA 1334 36 100.0 30 .................................... GCTATTTTTGTGGAAGGAAGTGATGACAAT 1400 36 100.0 30 .................................... CTTCGCAGCGGTCAAGTCATCCTTGATCTT 1466 36 100.0 30 .................................... TACGCTTGAATGGGATGACACTGATACTGC 1532 36 100.0 30 .................................... CATTATCGCTTGTGTAGTCGGTCCCCCATG 1598 36 100.0 30 .................................... CGCTGATCTATGGAAACAATGTATGTTTCA 1664 36 100.0 30 .................................... GTCTGCAGACTTGTTTTGTAGAATTATGGC 1730 36 100.0 30 .................................... TCGTGTTACCAGCAATGTGGTCGGTGAATG 1796 36 100.0 30 .................................... AGCCAAGTATCAATCTCGGTGTATCCGCTG 1862 36 100.0 31 .................................... ATTCATTATTGGCAGTATATATGGCTGGGTT 1929 36 100.0 30 .................................... AGCCAATATTGAATACTTGATGAATACAAA 1995 36 100.0 30 .................................... TTGATAAGCCGTCATCGTTCGTTGTTGCCG 2061 36 100.0 30 .................................... CAAGAGCAGTTTTGAATGAAATATCCTTAA 2127 36 100.0 30 .................................... ATATCGTTTGGCTGTGCTTTATCCATGCCG 2193 36 100.0 30 .................................... CAGCTCAATCATGACGTCTCTAACAGTGTC 2259 36 100.0 30 .................................... TAATTATCATCTGTACCATCTAGCACGTTG 2325 36 100.0 30 .................................... AACTCGTTTAATATAATTATGCTCTATCTG 2391 36 97.2 30 ................................A... GAATCTGAAAGACGTCACCAATTTTGATCC 2457 36 100.0 30 .................................... GCTAACGCGATCAAGTTACGCGTACGCGGC 2523 36 88.9 0 .............................G..TTC. | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : GGTTCTGAATGTCCCTTAAAATCTGTCTCAAATATTGACTTCAATCCATGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCGG # Right flank : CAAACAGCAGTGAGACTAAACTGACGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTCATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCCACCTCCTCTTGTGATAAAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //