Array 1 284558-285125 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVX01000002.1 Pseudomonas cichorii strain MAFF 301184 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 284558 28 100.0 32 ............................ GTTCTTCTGTTCTTCAGGCAGGTCTGAGTTCT 284618 28 100.0 32 ............................ TGTCCAGGTATTGGGCTCAGCCTTCAGGCTTG 284678 28 100.0 32 ............................ AGATGGAGGTTGTGACTTACAAAGCGAAGATG 284738 28 100.0 32 ............................ AACCCTGGTTATATCCACGCACAATGCGGTTG 284798 28 100.0 32 ............................ ACTCTGATCCTGAGATTGAAGCTGTGGCCAGC 284858 28 100.0 32 ............................ AAACGGCGACCGTGAGGACGCTGCTAAATGGT 284918 28 100.0 32 ............................ ACGAATACTTGGATGTTTTGCGTTCGTGGGGA 284978 28 100.0 32 ............................ CAGGCGCTCGTCTCGGTTCTTTACGCCAGATC 285038 28 100.0 32 ............................ ATGGTGTGCGCGACACGCCGGAGATGATCGAG 285098 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CTGGGTTTTGTTGGTTGCTGAGCCTGGAGCCCGCTTACAGGCGACAACTATCGTCGTGCCAATGAAAGAAAGTAGCTACCTGAGTAGGAGCGAATTCATTCGCGAGACGGCATTCCAGACAATACATATTCCTTGAATGTACCGACCTCTCCCTCCGACATTGCAGATCCCGATGCCAATCAGCTAAGGCACACACAAGCTTGTAGAAGGCAGCTTGCTGGCGAAAAAGGCCTGAAACCGACAAATATTCTGCGTCTGTACGTGAAGTCGCCAGCAAGCTGCCTCCCACAAAGTGATTTATGGCCTTAACTGATCGGCATTACTCCTAGATTGCCGATGCCAAGCCACGATTTAACTCCCCCTTTTCTGACCCTCTTTTTTCTAACCCTCTCAGGCTTCTTTAAAATCAATAACTTACGGAAGCCTGAGAAAAAAGGGTCAAACAGTGTTGGGCACGTGATTTCTCTTTAAAAACGGAGGGTTATAAGGCAAGGTGTCTA # Right flank : AGAACCGTACACCTACATCCACCCCCGTTGTCAGACGACCACCCCTGAGAAATCAAGTCCTGTAACCATGCTCCTGACAGATATCCACTGTCTGACAGGCTTTTTGGGTCAACCTAATTAAAGTTTCAGTGAGAGGCCCAAGCTGCACACACGCTTGACTAAATTGAAGCCGCCTCCACCATCGCCATGACGATGCAGAACTGTGAAAGGGTCTGCACGTATCTGAATTGCCTACAGGCCACAGCCCGTTTGACGTACTGCAGTCATATGCACCATTCTTGGAGCGGTGCCGATTTTGAAAACCCGCCCTTTCAGCGGTTTTTCAATTTTTCACCCAATGAATCCGGGCACTCCAGCATTCCCCTGTCCATGACCGCCTGCAGCGCCGCTGTGCAATCGCGCTTCATTTTTCTGCAAAACCTTTCACACAATGAAATGGCTGATCGCCTACAGAAGCCCACGGCCCGCTTGGCCTGCAGGTTAGTTTGCACTGCACCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 316824-318173 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVX01000002.1 Pseudomonas cichorii strain MAFF 301184 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 316824 28 100.0 32 ............................ TCGCTGGTTTTCGGGGTGTCATCGAGCGTTCA 316884 28 100.0 32 ............................ AGGGTTAAATCTAATTTGCGGTGAATGCTCCG 316944 28 100.0 33 ............................ CTTGACCGGTGGCAACCGCTCGACCTTGACCGG 317005 28 100.0 32 ............................ TTGACCGGTGGCTACGGCTCGACCTTGACCGG 317065 28 100.0 32 ............................ AGCCTGCAATCCGGCAATTTCGAGCAGCGGGC 317125 28 100.0 32 ............................ TACGCCGACAAGGTTGTCTACACCTGCAAAAA 317185 28 100.0 32 ............................ GAGCAACACGCCCAACACCCGCGCAACACTCA 317245 28 100.0 32 ............................ ACCACTACCGCCGCCACCATAAAGCGGATTGA 317305 28 100.0 32 ............................ ACTTTGGGAAGCCAGGACGGCGCAGATACCAT 317365 28 100.0 32 ............................ CGCATGGCCGAGCTGGCGCTTGAGTTCCTCGG 317425 28 100.0 32 ............................ TCTCCGGCGTCCTGCCGACGAACACAATCACC 317485 28 100.0 33 ............................ AGGGCTACAGTCGCATGCACGTCGCTGACACTT 317546 28 100.0 32 ............................ GTGAAACGAATGTTCCAGTAGACCTTGCCCTG 317606 28 100.0 32 ............................ AAGGACTGGAGAGATCAGAGCCAGCATTGCAA 317666 28 100.0 32 ............................ GTGCTGACCGGCGATAACCAGGTGTTTCTGTC 317726 28 100.0 32 ............................ AAGCTCTGTTTCACTGATCTGCCCGGCCAGAG 317786 28 100.0 32 ............................ GAGATACCCAAGGATGGAAGGTTGGCACGCAC 317846 28 100.0 32 ............................ TGTAAAAGTCACGATTCGCGCCGACGGCGCTT 317906 28 100.0 32 ............................ ACGCAGACATCGCATGGGCCGTCATGCACGCG 317966 28 100.0 33 ............................ TGGTTATCGCCGGTCAGCACGGCGTCCATGAAT 318027 28 100.0 32 ............................ CAGAGCAGTTGCAGATCCCGGTACCACTGCAA 318087 28 100.0 31 ............................ TACGACCCGGTCATTAATGGTCATCTGCTCT 318146 28 78.6 0 GC.A.......A.C..........C... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TCGTAGACATGAGCATTCCCCTGGAAATGGGCATGCAACGTCTCGATACCGGTGTCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGTGGGCTTACAGGGTTTGGGGTCGGGTTGAGTGTTATCGCGTATGGGAGACGGGAAGTCTAGAAGGTTTGTGCAGGGTGGCCTTCAAACATATGCAGGACCGGATTCATCCGGGAAAGCCGTATTCAAACACCTTTCGCGAATGAATTGGCTCTATATGCGTTAAGGTCAGTTCAGACCGTGGGAGGCAGCTTGCTGGCGACTGGTCGCATTTTCCATCGACGCCTGCCTGAGTCGATTTTCTGAGCGGCCTGTGCGGCCGTGAAGTTTCAGGACCCTCTTTTTTTCCTATTGGGTTCATCCTTTAAAAATCAATCACTTACAAAGCGTGATGAAAAAAGGGGTAAAACGGCCTCAAACGCATATTTTTCTTTGAATACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AACAATAAAATCAACCGCCACCCCATAACCCACTGATTTAAATAGATTTAAAACACTCACTGCAGGAGGGGGCTTGCCCGCGACAGCATAGGCAAGTCGATACACATCTGTCGTCAGCCATATATCCGTCGCGGACAAGCGCGTTCCTACAGTCCCATCCGTAATGTCCTTCGCACACGAATCGCGGACTGGTCTTTCTGGCACTCTGCCGCTCCCCGGCTCAAAAAACATAAAGCACCCTCTTACGCTATCGGCTATATATGTTTTCTCTAACCGGCCTAGTGCCATTATGCTTGGTAGTGCTTCTTTCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCCAAACGCGCGAATATTTATTACCTGCAGCATTGCCGGGTATTGGTGAATGGCGGGCGGGTCGAGTATGTGACGGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACTGTACTACTCGGCACCGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 328442-326915 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVX01000002.1 Pseudomonas cichorii strain MAFF 301184 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 328441 28 100.0 32 ............................ CGACGCGACCCGCCACAATAAAGATGCGGCGT 328381 28 100.0 32 ............................ CGGTAGAGTTACACCATACCAATCAAGGATGC 328321 28 100.0 32 ............................ TATCGTCGGGCCAGTGGCGATACAGTGAAGTA 328261 28 100.0 32 ............................ GAGACGAGCGCCTGGTTGTGATGAACGACGTT 328201 28 100.0 32 ............................ AAAGGACGGGCTTGTAAGGGTTTCAGCAGACG 328141 28 100.0 32 ............................ AGAAGACTGGGACGAGGGATACCTGAAAGTGT 328081 28 100.0 32 ............................ ACAGCGCAACGCGACCCACGCTGACCACTCCG 328021 28 100.0 32 ............................ AGGTAGGCTTTCGCGGTCTGCACGGCCTCATC 327961 28 100.0 32 ............................ AGCTGTGTGTTCGCCGCGCTGACGATATCGGC 327901 28 100.0 33 ............................ GAGCGCAACAAATGCCGGTGCGCGCTGGTAAGT 327840 28 100.0 32 ............................ CGAGCGCGGCAAGCCGCTTGCCGGTGGGGTCT 327780 28 100.0 32 ............................ TTGGCCAGGCCACGGGGTGTCCAAATGAATAC 327720 28 100.0 32 ............................ ATGGGTATGCTCCATCCGCCCTATGGCGGCAG 327660 28 100.0 32 ............................ TTTCCAAAGTCGAAGCGAGCAATCGGGTTCAA 327600 28 100.0 32 ............................ AGCAGCTCGCCGAAAAGATCGACGATCTGCAA 327540 28 100.0 32 ............................ AATGGGCGGATCTATCAGGCCACCCAGGCAGT 327480 28 100.0 32 ............................ ATCTGTGGGCCGCCGATAGCGATAGCTCGAAC 327420 28 100.0 32 ............................ TCAACCTCGATCCTGTCGGCATGCGCAACGTC 327360 28 100.0 32 ............................ TCGGGGTCGGACTGCGCACTTACAAGCTTCAT 327300 28 100.0 32 ............................ AGTTATAGGCAAACTCGAACAAGGCATTCACA 327240 28 100.0 32 ............................ TATTTACACCCACGGGTCTATTTCACTTGAAA 327180 28 100.0 32 ............................ ACCAGCTCTGCCGTCCCGTGCGGGCCGCATGG 327120 28 100.0 32 ............................ GGAATAAGAGCAGCAACGCAAAGTGCTTTAAT 327060 28 100.0 32 ............................ TTTTGTGGGGCCCGCAATCGGCGCAAAGTTGC 327000 28 96.4 31 ...........C................ ATGGTGCCATAGGTGATGATTTGCGAAACGG 326941 27 75.0 0 .CCG.......C.........C..-..C | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGTCAAGGTGGTTAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTCGAGAGTGGGAGTGTTTGCCGCTGAGATATCTGGGTGAGTACGGGCGGATTTATCCGCGAGACGTCACTGAAGACAATGAATTTCATGTGATGAAAGGTTCATCCCGCAGACCCAACCCCGTGGGAGGGTCCTTGGCCGCGACAGCTTTCACACAAAATATGTCCGGAAATGGAGCTTTCCAGGCTGTCATGTCGCAATTTCCGGTTTTTAGCGACACGTTATTGGGTCATGTCGTTGGCGACGACCTATCAAAAAGCACGGCGCTGTCGCAGCATATGAATATCTGGCCACGGCAGACAGGAATGAACCCTTTTCTGACCCTCTTTTTTTCACCATAGGTTCGTCCTTTAAAAATCAAAGACTTACAAAACTTGATAAAAAAAGGGGTAAAACGGCTGCAAGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : CGAACCCCTTGCAGTGACATCACTTACAAGGGTTTCGGTCCACTAACCCAAAAATCATCAAAACCAGGGAACAGTCGCCGTAGCACTCAACCCGTAGCTATTGAAGGTCCCCTGCTGGGCGGTGGCCTGTAGTGATCCATGCTGGATGAACAGCAGAAACGTCTGGCCACTGGTGCGGCTGCGCAACTGGGTGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCCTGCTCTTCGGTGAGGCCATGGCGTTTGATCAGGCGCCGCCTTGTGCGTTCCGGGTTGCTGTCCACTTGCACGCGGCTGACGCGACGATGCTGCGCGTCAGTGGGCACCACGCTCAGTTCGCCTACCCGCACATGGTCACGCATGCCCGTCAGCCAGGTCAGTGCCATCAAGGCATCCAGCGCTTGCGCACTGCCATGCAGGCGCAGGCAGTCGCCCAGGCCGCTGGCCTTGCCTCCAAGAGCCGGGAAGCTGATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //